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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|411471.5.peg.2537: Subdoligranulum variabile DSM 15176

This feature in The SEED Viewer

NCBI Taxonomy Id: 411471

Current Assignment: TrsK-like protein
Translate Function Assignments



Context on contig NZ_GG657715 from base 766386 to 778844 (12459 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
2530 766386 767012 627 +       2: 1 2   Chromosome (plasmid) partitioning protein ParA  
2531 766969 767904 936 + -44     2: 1 2   Chromosome (plasmid) partitioning protein ParB  
2532 767919 768197 279 + 14         hypothetical protein  
2533 768288 768413 126 + 90         hypothetical protein  
2534 768478 769356 879 + 64         hypothetical protein  
2535 769396 770139 744 + 39         Phage antirepressor protein  
2536 770226 770726 501 + 86         FIG00515953: hypothetical protein  
2537 770723 772552 1830 + -4         TrsK-like protein  
2538 772767 772985 219 + 214         FIG00529559: hypothetical protein  
2539 773056 773925 870 + 70         Tn5252, Orf23  
2540 773948 774364 417 + 22         FIG00516512: hypothetical protein  
2541 774468 776741 2274 + 103         TrsE-like protein  
2542 776738 777118 381 + -4         hypothetical protein  
2543 777111 778844 1734 + -8         NLP/P60 family protein  

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|411471.5.peg.2537 TrsK-like protein
MKQLNVKKLMLLNLPYILLGLFATNLGEAWRLATGADASAKMLSFFSTLPVALASWWPSL
HPLDLLVGLCCGAGLRLAVYLKGKNAKKYRHNVEYGSARWGTHDDIAPYIDPVFQNNVIL
TQTERLTMSSRPKNPKYARNKNVLVIGGSGSGKTRFWLKPNLMQMHSSYVVTDPKGTILV
ECGKMLQRGAPKLGKDGKPMKDKHGKVIYEPYQIRVLNTINFNKSMHYNPFSYIHSEKDI
LKLVTTLIANTKGEGKAGDDFWVKAETLLYCALIGYIHYEAPVEEQNFSTLIEMINSMEV
REDDEEFKNAVDLMFDELKEREPNHFAVRQYAKYKLAAGKTAKSILVSCGARLAVFDIAE
LREVTSYDELELDTLGDRRTALFLIMSDTDDSFNFLISMCYTQLFNLLCEKADDVYGGRL
PVHVRCLIDECANIGQIPKLEKLVATIRSREISACLVLQAQSQLKAIYKDNADTIIGNMD
SSIFLGGKEPTTLKELEAVLGKETIDTYNTGESRGRETSHSLNYQKLGKALMSQDELAVM
DGSKCILQLRGVRPFLSDKYDITQHPNYKYTADADPKNAFDIEGYLKARLKLKPNQVCDV
YEIDAAANE

MD5 = b96af621c0b6f0a32c217bf3b6be9040


  DNA Sequence

>fig|411471.5.peg.2537 TrsK-like protein
atgaagcagctgaatgtgaaaaagctgatgctgctgaacctgccctatatcctgctgggc
ctgtttgccaccaacctgggggaagcctggcggctggcgaccggcgcggatgcgtccgcc
aagatgctctcgttcttctccaccctgccggtggcgctggcaagctggtggcccagcctg
cacccactggatttgctggtggggctttgctgcggcgctggcctgcggctggcggtgtac
ctgaaaggcaagaacgccaagaagtaccgccacaacgtggagtatggttcggcccgttgg
ggcacccatgacgatattgccccctacatcgacccggtgttccagaataacgtcattctg
acccaaaccgagcggcttaccatgtccagccgccccaagaaccccaagtatgcccgcaac
aagaacgtgctggtcatcggcggttccggcagcggcaagacccgcttctggttgaagccc
aatctgatgcagatgcacagctcctatgtggtcacggaccccaagggcaccatcctggtg
gagtgcggcaaaatgcttcagcgtggcgcgcccaagctgggcaaggacggcaagcccatg
aaggacaagcacggaaaggtcatttacgagccgtaccagatccgggtgctgaacaccatc
aacttcaacaagtcgatgcactataaccccttcagctacattcactccgaaaaggacatt
ttgaagctggtgacaacgctgatcgccaacaccaagggcgagggcaaggccggggacgat
ttctgggtcaaagcggagacgctgctgtactgcgcgctgatcggctacatccactacgaa
gccccggtggaggaacagaatttctccaccctcattgagatgatcaacagcatggaggtc
cgggaggacgatgaggagttcaaaaacgccgtggacctgatgttcgatgagctgaaagag
cgggaacccaaccactttgcggtgcggcaatatgccaaatataaattggctgcgggcaaa
accgccaagtcgattttggtgagctgcggcgcccggctggcggtgttcgacattgccgag
ctgcgggaggtcacgtcctacgacgagttggagctggacaccctgggcgaccgccggacg
gcgctgtttttgattatgagtgacacggacgattcctttaatttcttaatctccatgtgt
tacacccagctattcaacctcctctgtgaaaaggccgacgatgtgtacggcgggcggctg
ccggtccatgtgcggtgcctcatcgacgagtgcgccaacatcggccagatccccaagctg
gaaaagctggtcgccaccatccgaagccgggagatttccgcctgcctggtcttgcaggca
cagagccagctcaaggccatctacaaggacaacgccgacaccatcatcggaaatatggat
tcttccatcttcctgggcggcaaggagccgaccacgctcaaagagctggaggccgtgctg
ggcaaggagaccatcgacacctacaacaccggcgaaagccgtgggcgggagacttcccac
tcgctcaactatcaaaaattggggaaggcgctgatgagccaagacgagctggccgtcatg
gacggcagcaagtgcattttgcagctgcgcggtgtgcggccgttcctctcggacaagtac
gacatcacccagcaccccaactacaagtacaccgccgacgccgacccgaagaacgccttt
gatattgaaggctatctcaaggcccggctgaagctcaaacccaaccaggtctgcgacgtg
tatgagatcgacgccgcagccaacgaatga


  DNA with Flanking Sequence

>fig|411471.5.peg.2537 TrsK-like protein
aaaatgcaggaggaagtggaaaacaggactttgacgctgatcgtcagcgggacaaagttc
accgggcggctgttcaaggccgccatatccaagtacatggcccaccgcagggagaaaaag
ctggaaaagcagcgcagccgggattcccccgttacccccaagggcaagcagacggtgaag
cagctcatcgggcagaaccagggcgtctccaacatcgagatcaacgacccgtccatccgt
gattttgagcgcatcgcccgcaagtacggcgtggactatgcggtaaaaaaggaccgcagc
gccttgccgcccaagtacctgatcttcttcaaagcccgtgacgccgacgccctgacggcg
gcattctcggagtacacccagaagaaggtcaagaaggccgaccgcagcgagcgcccgtcc
gtgctggcgaagctggctcagttcaaggagctgctcaaaaataccgtggtggaccgcagc
cgccggaaggagctggaacgatgaagcagctgaatgtgaaaaagctgatgctgctgaacc
tgccctatatcctgctgggcctgtttgccaccaacctgggggaagcctggcggctggcga
ccggcgcggatgcgtccgccaagatgctctcgttcttctccaccctgccggtggcgctgg
caagctggtggcccagcctgcacccactggatttgctggtggggctttgctgcggcgctg
gcctgcggctggcggtgtacctgaaaggcaagaacgccaagaagtaccgccacaacgtgg
agtatggttcggcccgttggggcacccatgacgatattgccccctacatcgacccggtgt
tccagaataacgtcattctgacccaaaccgagcggcttaccatgtccagccgccccaaga
accccaagtatgcccgcaacaagaacgtgctggtcatcggcggttccggcagcggcaaga
cccgcttctggttgaagcccaatctgatgcagatgcacagctcctatgtggtcacggacc
ccaagggcaccatcctggtggagtgcggcaaaatgcttcagcgtggcgcgcccaagctgg
gcaaggacggcaagcccatgaaggacaagcacggaaaggtcatttacgagccgtaccaga
tccgggtgctgaacaccatcaacttcaacaagtcgatgcactataaccccttcagctaca
ttcactccgaaaaggacattttgaagctggtgacaacgctgatcgccaacaccaagggcg
agggcaaggccggggacgatttctgggtcaaagcggagacgctgctgtactgcgcgctga
tcggctacatccactacgaagccccggtggaggaacagaatttctccaccctcattgaga
tgatcaacagcatggaggtccgggaggacgatgaggagttcaaaaacgccgtggacctga
tgttcgatgagctgaaagagcgggaacccaaccactttgcggtgcggcaatatgccaaat
ataaattggctgcgggcaaaaccgccaagtcgattttggtgagctgcggcgcccggctgg
cggtgttcgacattgccgagctgcgggaggtcacgtcctacgacgagttggagctggaca
ccctgggcgaccgccggacggcgctgtttttgattatgagtgacacggacgattccttta
atttcttaatctccatgtgttacacccagctattcaacctcctctgtgaaaaggccgacg
atgtgtacggcgggcggctgccggtccatgtgcggtgcctcatcgacgagtgcgccaaca
tcggccagatccccaagctggaaaagctggtcgccaccatccgaagccgggagatttccg
cctgcctggtcttgcaggcacagagccagctcaaggccatctacaaggacaacgccgaca
ccatcatcggaaatatggattcttccatcttcctgggcggcaaggagccgaccacgctca
aagagctggaggccgtgctgggcaaggagaccatcgacacctacaacaccggcgaaagcc
gtgggcgggagacttcccactcgctcaactatcaaaaattggggaaggcgctgatgagcc
aagacgagctggccgtcatggacggcagcaagtgcattttgcagctgcgcggtgtgcggc
cgttcctctcggacaagtacgacatcacccagcaccccaactacaagtacaccgccgacg
ccgacccgaagaacgcctttgatattgaaggctatctcaaggcccggctgaagctcaaac
ccaaccaggtctgcgacgtgtatgagatcgacgccgcagccaacgaatgatgctccgctg
tgaaaggaggggtcctatctatccgccacaaccgccccgctggggccatcggcgtacaaa
gcggacgatctctatcaaaataatgaaaaaggaggaaggccggaatcagccagcccggaa
atcgggcggcgattgtccggcttttgtatgcctatgaaccataactaatcaatctttttc
aaatgattccggccaactttatttatggaatttttcaatcaggcaatcaccgttctccag
accctcgttatcgccctcggtgccggtctcggcgtgtggggcgtcatcaacctgctggaa
ggttacggcaacgacaaccccggtgccaaaagccagggcatgaaacagctcatggccggc
gcgggtgtcgctatcgtcggcatggtgctggtgcccctgctgtccggcctgttcaccgtc
tgatcgttacccgctgaaatcctcgccccctcccgctgtgcacgggaggggcagaaagga
ggtttgacac


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
GO:0009291       P:unidirectional conjugation
GO:0016020       C:membrane
fig|411471.5.peg.3273 Subdoligranulum variabile DSM 15176 FIG   TrsK-like protein
gb|EEG44218.1 Subdoligranulum variabile DSM 15176     hypothetical protein SUBVAR_02995
gi|225033972 Subdoligranulum variabile DSM 15176 NCBI   hypothetical protein SUBVAR_02995
gi|225566642 Subdoligranulum variabile DSM 15176 NCBI   hypothetical protein SUBVAR_02995
ref|ZP_03776449.1 Subdoligranulum variabile DSM 15176 RefSeq   hypothetical protein SUBVAR_02995
tr|C0CFI6 Subdoligranulum variabile DSM 15176 TrEMBL   Putative uncharacterized protein


  Links to Related Entries in Other Sites

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  Functional Coupling

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  Attributes

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  Protein Families

No protein families found

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