The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
The SEED


FIG search

Protein fig|411471.5.peg.2535: Subdoligranulum variabile DSM 15176

This feature in The SEED Viewer

NCBI Taxonomy Id: 411471

Current Assignment: Phage antirepressor protein
Translate Function Assignments



Context on contig NZ_GG657715 from base 764260 to 776741 (12482 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
2528 764862 764260 603 -       11: 11 3 4 9 7 10 14 12 6 5 13   Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter  
rna.48 765278 765362 85 + 415     1: 8   tRNA-Leu-CAA  
2529 765552 765400 153 - 37         hypothetical protein  
2530 766386 767012 627 + 833     2: 1 2   Chromosome (plasmid) partitioning protein ParA  
2531 766969 767904 936 + -44     2: 1 2   Chromosome (plasmid) partitioning protein ParB  
2532 767919 768197 279 + 14         hypothetical protein  
2533 768288 768413 126 + 90         hypothetical protein  
2534 768478 769356 879 + 64         hypothetical protein  
2535 769396 770139 744 + 39         Phage antirepressor protein  
2536 770226 770726 501 + 86         FIG00515953: hypothetical protein  
2537 770723 772552 1830 + -4         TrsK-like protein  
2538 772767 772985 219 + 214         FIG00529559: hypothetical protein  
2539 773056 773925 870 + 70         Tn5252, Orf23  
2540 773948 774364 417 + 22         FIG00516512: hypothetical protein  
2541 774468 776741 2274 + 103         TrsE-like protein  

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|411471.5.peg.2535 Phage antirepressor protein
MNQMEIFKNPEFGAIRAVEIDGEPWLVGKDVALALGYKNPQEAIRNHVDAEDKGVSEILT
PGGIQKLPIINESGLYSLVLSSKLPKAKQFRRWVTSEVLPSIRQHGAYLTREKLWEVATS
PEALLKLCSDLLAEREKNAALQADNARLQGKAVYYDLFIDLRHSTNLRTTAKELEVPERR
FVRFLLERRYVYRAPSGCVLPYAKSANEGLFCVKDFCRNGHTGSYTLVTPKGKLHFAELR
SLILVTV

MD5 = 2094588e7b5137af56b922fd445a9e95


  DNA Sequence

>fig|411471.5.peg.2535 Phage antirepressor protein
atgaaccagatggaaattttcaaaaacccggagtttggggctatccgcgccgtagagatt
gacggagagccttggctggtcggaaaagatgtggcgttagcgttagggtataaaaatccg
caggaggcgatccgcaaccacgttgacgcagaggacaaaggggtgagcgaaattctcacc
cctggcgggattcagaaactccctatcatcaacgagtccggcctgtattctctggtgttg
tccagcaaacttcccaaagcaaagcagttccgccgctgggtcacgtctgaggtcctgccc
agcatccgccagcacggggcctacctcaccagggaaaaactgtgggaggtcgccacctcg
ccggaggcgctgctgaagctctgctccgacctgctggccgagcgcgagaagaacgcggcg
ctgcaagcggacaacgcccggctgcaaggcaaggccgtctactacgacctgtttatcgac
ctgcggcacagcaccaacctgcgcaccaccgccaaggagttggaggtgccggagcggcgc
ttcgtccgtttcctgctggaacgccggtacgtttaccgcgccccctccggctgtgtgctg
ccctacgccaagagcgccaacgaggggctgttctgtgtgaaggatttttgccgcaacggc
cacactggctcctacacgctggtgacgcccaagggcaagctgcactttgcagaactgcgg
tcgctgatcctggtgacggtatga


  DNA with Flanking Sequence

>fig|411471.5.peg.2535 Phage antirepressor protein
aaacaacggatgtaccaagtaccgattccattcccttccggggatttgcggcggccaggc
cgccggaacggaaaggacgggatgcgatgtcggtggaagaaatggagagttatcgggatt
tggtgttggagaacatcgagtacgaccacctgtgccgggagttttcgacctaccgggagg
atctggacgagatcgtggagctgatcgtggaaacggtctgcgccagacgcaagaccaccc
gcattgccggggcggactttccccatgaggtcgtgcggtcgcggttcttgaagctggaca
gctcccacatcgagttcgtcatggagtgtctgcacaacaacaccaccgaggtccgcaaca
tgaagcagtacctgctgaccgtgctgttcaacgcgcccaccaccatgaacaatcactaca
cggcccaggtcaaccacgatatgcacgcaggcggctggtaatggccgccttttctgctgc
accgcccaaggaggcacgatatgaaccagatggaaattttcaaaaacccggagtttgggg
ctatccgcgccgtagagattgacggagagccttggctggtcggaaaagatgtggcgttag
cgttagggtataaaaatccgcaggaggcgatccgcaaccacgttgacgcagaggacaaag
gggtgagcgaaattctcacccctggcgggattcagaaactccctatcatcaacgagtccg
gcctgtattctctggtgttgtccagcaaacttcccaaagcaaagcagttccgccgctggg
tcacgtctgaggtcctgcccagcatccgccagcacggggcctacctcaccagggaaaaac
tgtgggaggtcgccacctcgccggaggcgctgctgaagctctgctccgacctgctggccg
agcgcgagaagaacgcggcgctgcaagcggacaacgcccggctgcaaggcaaggccgtct
actacgacctgtttatcgacctgcggcacagcaccaacctgcgcaccaccgccaaggagt
tggaggtgccggagcggcgcttcgtccgtttcctgctggaacgccggtacgtttaccgcg
ccccctccggctgtgtgctgccctacgccaagagcgccaacgaggggctgttctgtgtga
aggatttttgccgcaacggccacactggctcctacacgctggtgacgcccaagggcaagc
tgcactttgcagaactgcggtcgctgatcctggtgacggtatgacaggccggtatctgct
gcggcggctggtggtcccgccttagattcaagaccacccactgcataaccgacgaaggga
ggcgagaaaaatgcaggaggaagtggaaaacaggactttgacgctgatcgtcagcgggac
aaagttcaccgggcggctgttcaaggccgccatatccaagtacatggcccaccgcaggga
gaaaaagctggaaaagcagcgcagccgggattcccccgttacccccaagggcaagcagac
ggtgaagcagctcatcgggcagaaccagggcgtctccaacatcgagatcaacgacccgtc
catccgtgattttgagcgcatcgcccgcaagtacggcgtggactatgcggtaaaaaagga
ccgcagcgccttgccgcccaagtacctgatcttcttcaaagcccgtgacgccgacgccct
gacggcggcattctcggagtacacccagaagaaggtcaagaaggccgaccgcagcgagcg
cccg


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
GO:0003677       F:DNA binding
fig|411471.5.peg.3271 Subdoligranulum variabile DSM 15176 FIG   Phage antirepressor protein
gb|EEG44216.1 Subdoligranulum variabile DSM 15176     hypothetical protein SUBVAR_02993
gi|225033970 Subdoligranulum variabile DSM 15176 NCBI   hypothetical protein SUBVAR_02993
gi|225566640 Subdoligranulum variabile DSM 15176 NCBI   hypothetical protein SUBVAR_02993
ref|ZP_03776447.1 Subdoligranulum variabile DSM 15176 RefSeq   hypothetical protein SUBVAR_02993
tr|C0CFI4 Subdoligranulum variabile DSM 15176 TrEMBL   Putative uncharacterized protein


  Links to Related Entries in Other Sites

This PEG has no links.
add a new link


  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key
Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer



Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options


|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions


FIG search