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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|411471.5.peg.2532: Subdoligranulum variabile DSM 15176

This feature in The SEED Viewer

NCBI Taxonomy Id: 411471

Current Assignment: hypothetical protein
Translate Function Assignments



Context on contig NZ_GG657715 from base 762677 to 773925 (11249 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
2526 763588 762677 912 -           hypothetical protein  
2527 764243 763581 663 - -8         probable phosphoglycolate phosphatase  
2528 764862 764260 603 - 16     11: 5 8 9 4 3 13 7 14 11 10 6   Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter  
rna.48 765278 765362 85 + 415     1: 12   tRNA-Leu-CAA  
2529 765552 765400 153 - 37         hypothetical protein  
2530 766386 767012 627 + 833     2: 1 2   Chromosome (plasmid) partitioning protein ParA  
2531 766969 767904 936 + -44     2: 1 2   Chromosome (plasmid) partitioning protein ParB  
2532 767919 768197 279 + 14         hypothetical protein  
2533 768288 768413 126 + 90         hypothetical protein  
2534 768478 769356 879 + 64         hypothetical protein  
2535 769396 770139 744 + 39         Phage antirepressor protein  
2536 770226 770726 501 + 86         FIG00515953: hypothetical protein  
2537 770723 772552 1830 + -4         TrsK-like protein  
2538 772767 772985 219 + 214         FIG00529559: hypothetical protein  
2539 773056 773925 870 + 70         Tn5252, Orf23  

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|411471.5.peg.2532 hypothetical protein
MRDISARELKGHNILAVERFQDSTRWMVEFAVRKPRTPYGSPGDEVRLFLTEDGYRQALD
AQRSQQIKIKRHAHVVEGHIIDFKPKKKRRHP

MD5 = 17d01dc78aa6570c034f6404a6ad81e8


  DNA Sequence

>fig|411471.5.peg.2532 hypothetical protein
atgagggatatttcagcccgcgagctgaaaggacataacattttggctgtggagcgattt
caggacagcacccgctggatggtggagtttgcggtccgcaagccccgcaccccttacggc
agccccggcgacgaggtgcgcctgtttctcaccgaggacggctaccggcaggccctggac
gcccagcgcagccagcagatcaaaattaagcgccatgcccacgttgtcgaggggcacatc
atcgacttcaagccgaagaaaaagcgccgccacccgtaa


  DNA with Flanking Sequence

>fig|411471.5.peg.2532 hypothetical protein
tccaaagaaaattgttcccaagttgggaacgattttgggaagaagtcgagcgaggtattg
gctgaacaggtcggccagagtaaaaaccagatttttcgttatatccgcctcaccgagcta
attcccgaactgctggacatggtggacgagaagaaaatcgccttcaatccggcctacgag
ctgtccttcctcaaaaaagaggaacaggtggatttgctggacgcgatggacagcgaacag
gccacgccgtcgctctcccaggcccagcggctgaaaaagtacagccaggagggccacctg
accctcgacatgatgcgggtcatcatgggcgaagaaaagaaaagcgacctggacaagatc
accttcaccagcgacaccctgcgcaaatattttccccggagctatacgccccagcggatg
caggaaaccatcatcaagctgctggaacagtggcagcgcaagcgacagcaacagcatgaa
cgctgagagaggagttgcctatgagggatatttcagcccgcgagctgaaaggacataaca
ttttggctgtggagcgatttcaggacagcacccgctggatggtggagtttgcggtccgca
agccccgcaccccttacggcagccccggcgacgaggtgcgcctgtttctcaccgaggacg
gctaccggcaggccctggacgcccagcgcagccagcagatcaaaattaagcgccatgccc
acgttgtcgaggggcacatcatcgacttcaagccgaagaaaaagcgccgccacccgtaaa
ccaaccacttgccaagaaaggaatgaactatgtgtaccgttagagacattgaagaagcca
tccgcgaacactgccaatcccagcatgacatggaaagcaccgagatcgaccaggtgatgc
agcgcctgcccttcggcaccgcgcaggatgtttttacccggccccctgtgccgaagccgc
cgtattcctggcacagccggaactaccgcacctgaccgccgcagtctctttgaagattgc
ggcttttttcatgccatgaatgccgagaggagtgatgaaatggccgtttttcgtattgaa
cggacccgtgattataccgtgatgagcaaccaccacctgcgtgataaggcgctgtctctg
aaatccaaggggcttttgtccatgatgttatctctgccagaggactggaactacaccaca
cgcggtctggcgaagatctgcaaggagggcgtggacgccatcggcggggcgctgcgggag
ctggaagccgccgggtaca


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
fig|411471.5.peg.3268 Subdoligranulum variabile DSM 15176 FIG   hypothetical protein
gb|EEG44213.1 Subdoligranulum variabile DSM 15176     hypothetical protein SUBVAR_02990
gi|225033967 Subdoligranulum variabile DSM 15176 NCBI   hypothetical protein SUBVAR_02990
gi|225566637 Subdoligranulum variabile DSM 15176 NCBI   hypothetical protein SUBVAR_02990
ref|ZP_03776444.1 Subdoligranulum variabile DSM 15176 RefSeq   hypothetical protein SUBVAR_02990
tr|C0CFI1 Subdoligranulum variabile DSM 15176 TrEMBL   Putative uncharacterized protein


  Links to Related Entries in Other Sites

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  Functional Coupling

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  Attributes

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  Protein Families

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