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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|411471.5.peg.2531: Subdoligranulum variabile DSM 15176

This feature in The SEED Viewer

NCBI Taxonomy Id: 411471

Current Assignment: Chromosome (plasmid) partitioning protein ParB
Translate Function Assignments



Context on contig NZ_GG657715 from base 759692 to 772985 (13294 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
2525 762562 759692 2871 -       2: 7 13   Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1)  
2526 763588 762677 912 - 114         hypothetical protein  
2527 764243 763581 663 - -8         probable phosphoglycolate phosphatase  
2528 764862 764260 603 - 16     11: 5 11 10 4 3 15 8 16 12 9 6   Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter  
rna.48 765278 765362 85 + 415     1: 14   tRNA-Leu-CAA  
2529 765552 765400 153 - 37         hypothetical protein  
2530 766386 767012 627 + 833     2: 1 2   Chromosome (plasmid) partitioning protein ParA  
2531 766969 767904 936 + -44     2: 1 2   Chromosome (plasmid) partitioning protein ParB  
2532 767919 768197 279 + 14         hypothetical protein  
2533 768288 768413 126 + 90         hypothetical protein  
2534 768478 769356 879 + 64         hypothetical protein  
2535 769396 770139 744 + 39         Phage antirepressor protein  
2536 770226 770726 501 + 86         FIG00515953: hypothetical protein  
2537 770723 772552 1830 + -4         TrsK-like protein  
2538 772767 772985 219 + 214         FIG00529559: hypothetical protein  

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

Subsystem Curator Role
Two_cell_division_clusters_relating_to_chromosome_partitioning RossO Chromosome (plasmid) partitioning protein ParB
Bacterial_Cytoskeleton OlgaZ Chromosome (plasmid) partitioning protein ParB


  Protein Sequence

>fig|411471.5.peg.2531 Chromosome (plasmid) partitioning protein ParB
MKSSAKKVELASVDDLFSTEESRADAQREKVMEIPLSELHPFKDHPFKVKDDEAMMETAD
SIRQYGVLVPAIARPDPNGGYELVAGHRRHRASELAGKETMPVIVRDLDDDQATIIMVDS
NLQRESLLPSERAFAYKMKLEAMKRQAGRPSKENCSQVGNDFGKKSSEVLAEQVGQSKNQ
IFRYIRLTELIPELLDMVDEKKIAFNPAYELSFLKKEEQVDLLDAMDSEQATPSLSQAQR
LKKYSQEGHLTLDMMRVIMGEEKKSDLDKITFTSDTLRKYFPRSYTPQRMQETIIKLLEQ
WQRKRQQQHER

MD5 = 9818f37a4c6c68a82402b332c98b09b4


  DNA Sequence

>fig|411471.5.peg.2531 Chromosome (plasmid) partitioning protein ParB
ttgaaaagcagcgcgaaaaaagtagagctggcctcagtcgatgacctgttttccaccgag
gaaagccgcgccgacgcccagcgtgaaaaagtcatggaaattcccttgtcggagctgcac
ccattcaaggatcacccctttaaggtcaaggacgatgaggccatgatggagaccgccgac
agcatccggcagtacggcgtactggtcccggccattgcccgcccggaccctaatggcggc
tatgagctggttgccgggcaccggcggcaccgagctagcgagctggcgggtaaagaaacc
atgccggtgattgtccgcgacctggacgatgaccaggccaccatcatcatggttgacagc
aatttgcagcgggaaagcctgctccccagtgaaagggcttttgcctacaagatgaagctg
gaagctatgaagcgacaagctggcagaccgtccaaagaaaattgttcccaagttgggaac
gattttgggaagaagtcgagcgaggtattggctgaacaggtcggccagagtaaaaaccag
atttttcgttatatccgcctcaccgagctaattcccgaactgctggacatggtggacgag
aagaaaatcgccttcaatccggcctacgagctgtccttcctcaaaaaagaggaacaggtg
gatttgctggacgcgatggacagcgaacaggccacgccgtcgctctcccaggcccagcgg
ctgaaaaagtacagccaggagggccacctgaccctcgacatgatgcgggtcatcatgggc
gaagaaaagaaaagcgacctggacaagatcaccttcaccagcgacaccctgcgcaaatat
tttccccggagctatacgccccagcggatgcaggaaaccatcatcaagctgctggaacag
tggcagcgcaagcgacagcaacagcatgaacgctga


  DNA with Flanking Sequence

>fig|411471.5.peg.2531 Chromosome (plasmid) partitioning protein ParB
cgacatccagctctccggcatggaggtatccctagtgaatgccatgagccgcgagacgat
tctgcggcagtatctggacacggtgaagggacagtattcccatatcctcatcgactgcca
accctccctgggaatgctcacggtcaacgcgctggccgccgccaacaggatcatagtccc
cgtccaagcggagtatctgcccgccaagggcctggaacagctgctgtccaccatcaacaa
ggtcaagcggcagttaaatcccaagctccagatcgacggtattctgctgacgatggtgga
caaccgcaccaactttgccaaagagatcgccgccctgctgcgggagacctacggcagcaa
aatcaaggtgttcggcaccgagattccccactcggttcgagccaaggagatcagcgccga
gggcaagagcatcttcgcacatgaccccggcggcaaggtggcggaagcctataaaaatct
gacgcgggaggtgataaaacttgaaaagcagcgcgaaaaaagtagagctggcctcagtcg
atgacctgttttccaccgaggaaagccgcgccgacgcccagcgtgaaaaagtcatggaaa
ttcccttgtcggagctgcacccattcaaggatcacccctttaaggtcaaggacgatgagg
ccatgatggagaccgccgacagcatccggcagtacggcgtactggtcccggccattgccc
gcccggaccctaatggcggctatgagctggttgccgggcaccggcggcaccgagctagcg
agctggcgggtaaagaaaccatgccggtgattgtccgcgacctggacgatgaccaggcca
ccatcatcatggttgacagcaatttgcagcgggaaagcctgctccccagtgaaagggctt
ttgcctacaagatgaagctggaagctatgaagcgacaagctggcagaccgtccaaagaaa
attgttcccaagttgggaacgattttgggaagaagtcgagcgaggtattggctgaacagg
tcggccagagtaaaaaccagatttttcgttatatccgcctcaccgagctaattcccgaac
tgctggacatggtggacgagaagaaaatcgccttcaatccggcctacgagctgtccttcc
tcaaaaaagaggaacaggtggatttgctggacgcgatggacagcgaacaggccacgccgt
cgctctcccaggcccagcggctgaaaaagtacagccaggagggccacctgaccctcgaca
tgatgcgggtcatcatgggcgaagaaaagaaaagcgacctggacaagatcaccttcacca
gcgacaccctgcgcaaatattttccccggagctatacgccccagcggatgcaggaaacca
tcatcaagctgctggaacagtggcagcgcaagcgacagcaacagcatgaacgctgagaga
ggagttgcctatgagggatatttcagcccgcgagctgaaaggacataacattttggctgt
ggagcgatttcaggacagcacccgctggatggtggagtttgcggtccgcaagccccgcac
cccttacggcagccccggcgacgaggtgcgcctgtttctcaccgaggacggctaccggca
ggccctggacgcccagcgcagccagcagatcaaaattaagcgccatgcccacgttgtcga
ggggcacatcatcgacttcaagccgaagaaaaagcgccgccacccgtaaaccaaccactt
gccaagaaaggaatgaactatgtgtaccgttagagacattgaagaagccatccgcgaaca
ctgccaatcccagcatgacatggaaagcaccgagatcgaccaggtgatgcagcgcctgcc
cttcggcaccgcgcaggatgtttttacccggccccctgtgccgaagccgccgtattcctg
gcacagccggaactac


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
fig|411471.5.peg.3267 Subdoligranulum variabile DSM 15176 FIG   Chromosome (plasmid) partitioning protein ParB


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  Functional Coupling

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  Attributes

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  Protein Families

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