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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|411471.5.peg.2528: Subdoligranulum variabile DSM 15176

This feature in The SEED Viewer

NCBI Taxonomy Id: 411471

Current Assignment: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter
Translate Function Assignments



Context on contig NZ_GG657715 from base 759219 to 770139 (10921 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
2524 759626 759219 408 -           hypothetical protein  
2525 762562 759692 2871 - 65     2: 7 13   Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1)  
2526 763588 762677 912 - 114         hypothetical protein  
2527 764243 763581 663 - -8         probable phosphoglycolate phosphatase  
2528 764862 764260 603 - 16     11: 5 11 10 4 3 15 8 16 12 9 6   Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter  
rna.48 765278 765362 85 + 415     1: 14   tRNA-Leu-CAA  
2529 765552 765400 153 - 37         hypothetical protein  
2530 766386 767012 627 + 833     2: 1 2   Chromosome (plasmid) partitioning protein ParA  
2531 766969 767904 936 + -44     2: 1 2   Chromosome (plasmid) partitioning protein ParB  
2532 767919 768197 279 + 14         hypothetical protein  
2533 768288 768413 126 + 90         hypothetical protein  
2534 768478 769356 879 + 64         hypothetical protein  
2535 769396 770139 744 + 39         Phage antirepressor protein  

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

Subsystem Curator Role
Q_G+_playing Hutinet_Geoffrey_user Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter
Queuosine-Archaeosine_Biosynthesis_phage_hosts Hutinet_Geoffrey_user Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter
Queuosine_exploration_RZ ZALLOT_Remi_user Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter
ECF_class_transporters rodionov Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter
Full_genomes ZALLOT_Remi_user Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter
Queuosine_degradation vcrecy Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter
q_to_preQ1_salvage Yuan_Yifeng_user Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter
Queuosine_bacterial_salvage_all_genomes ZALLOT_Remi_user Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter
q_salvage_in_Bacteria Yuan_Yifeng_user Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter
Queuosine-Archaeosine_Biosynthesis vcrecy Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter
Queuosine_bacterial_salvage ZALLOT_Remi_user Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter


  Protein Sequence

>fig|411471.5.peg.2528 Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter
MYIAILSVVAIVAAFLAVRLALPRTDGQVSVQRLVRCAVIAAVYVVLCLVLAPFSYGAVQ
VRIAEALCLLPVFGAEYIIGVTLGCFLANLFGSTIIDVIFGTIATLLACLVTYRLRNLRI
KGLAIPASLPPVLFNAVIVGIEITLFFTDYTAMSAPVWLLCITNGISVGIGELISCTVLG
VALVKLIESNTALKRIFTEK

MD5 = b00492dfd1f93e3533b5ef94cf179841


  DNA Sequence

>fig|411471.5.peg.2528 Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter
atgtatattgcaattctgtccgtcgtcgccattgtggcggcgttcctggccgttcgtctg
gccctgccccgcaccgatggtcaagtctcggtccagcgtctggtgcgctgcgccgtcatc
gctgccgtctatgtggtgctctgcctggtgctggcgcccttcagctacggtgccgtccag
gtccgcatcgcagaggccctctgcctgctgcccgtcttcggcgccgagtacatcatcggc
gtgacactgggctgcttcctggccaacctgttcggctccaccatcatcgacgtcatcttc
ggcaccatcgccaccctgctggcctgccttgtgacctaccgcctgcgtaatctgcgcatc
aaaggtctggcgattccggcctccctgccgccggtactcttcaatgccgttatcgtgggc
attgagatcaccctcttcttcaccgattacaccgccatgagtgctcccgtctggctgctc
tgcatcaccaacggcatctcggtgggtatcggcgaactgatcagctgcaccgtcctgggt
gtggctctggtcaaactcattgaatccaacaccgctctcaagcggatctttaccgaaaaa
taa


  DNA with Flanking Sequence

>fig|411471.5.peg.2528 Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter
tggtgccggtggtgggactcgaacccacacggatttctccacacgattttgagtcgcggt
cgtctgccaattccgacacaccggcatttatattttaatttcccttgtgtcccgcacatc
tcagattttggagggatgtgcgggagggatattaaaaccaaatgaaaatatgaagttgtg
aaagcgccgatttatcaagggttttgccagggcacccaacattctacgaagtagattttg
agtccgtctcgtctgccaattccaacacaccggcttgtaactcttgaattataaacggtt
tgcgtgggaaagtcaagcccgtttgcccttttacgtcaatttttgcgtcaaaccctcttg
caaccgttatcttgctttgttataatagcattttgttgagcaacttaggattttaggctc
cgccgcagcttccgcggcgcaaaccggtgtcaggctggcggtctggcatgcggtcaaaat
ctatccgccggagtgtttgtatgtatattgcaattctgtccgtcgtcgccattgtggcgg
cgttcctggccgttcgtctggccctgccccgcaccgatggtcaagtctcggtccagcgtc
tggtgcgctgcgccgtcatcgctgccgtctatgtggtgctctgcctggtgctggcgccct
tcagctacggtgccgtccaggtccgcatcgcagaggccctctgcctgctgcccgtcttcg
gcgccgagtacatcatcggcgtgacactgggctgcttcctggccaacctgttcggctcca
ccatcatcgacgtcatcttcggcaccatcgccaccctgctggcctgccttgtgacctacc
gcctgcgtaatctgcgcatcaaaggtctggcgattccggcctccctgccgccggtactct
tcaatgccgttatcgtgggcattgagatcaccctcttcttcaccgattacaccgccatga
gtgctcccgtctggctgctctgcatcaccaacggcatctcggtgggtatcggcgaactga
tcagctgcaccgtcctgggtgtggctctggtcaaactcattgaatccaacaccgctctca
agcggatctttaccgaaaaataatctgaggtaacaccctatgcgcccggaactgattttg
tgggattggaacggtaccctgctggatgatgtagcactgtgcgtggacgcgctcaaccgt
ctgctggcacgctatggttatccccagcggtacgaccgcgatcagtaccgggcgattttt
ggttttccggtgcaggactactacgcccgcgccgggtttgatttcagccgcgacagcttt
gacgagctggccgtcagctttatggaagattacatccccgccagcgaagcctgccccctg
gcagacggtgcccgggacgccctggacgcttttgccgccgccgggctgcggcaggtgatt
ctttcggccagccccatcaccacgctgcagcaccaggtggaaacgcggcgtgttgccggg
tattttgaccggctgctgggcctgggcgacatttatgccaagagcaaggtagagctgggg
ctgcagtatctgcgggaagccggctttgatccggaccgcgccg


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
fig|411471.5.peg.3264 Subdoligranulum variabile DSM 15176 FIG   Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter
gb|EEG44379.1 Subdoligranulum variabile DSM 15176     hypothetical protein SUBVAR_02983
gi|225034133 Subdoligranulum variabile DSM 15176 NCBI   hypothetical protein SUBVAR_02983
gi|225566248 Subdoligranulum variabile DSM 15176 NCBI   hypothetical protein SUBVAR_02983
ref|ZP_03776438.1 Subdoligranulum variabile DSM 15176 RefSeq   hypothetical protein SUBVAR_02983
tr|C0CFH5 Subdoligranulum variabile DSM 15176 TrEMBL   Putative uncharacterized protein


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