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SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
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Protein fig|396513.4.peg.476: Staphylococcus carnosus subsp. carnosus TM300

This feature in The SEED Viewer

NCBI Taxonomy Id: 396513

Current Assignment: Phage essential recombination function protein, Erf
Translate Function Assignments


Context on contig NC_012121 from base 475670 to 486228 (10559 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
466 475852 475670 183 -           hypothetical protein locus|Sca_0464, protein_id|YP_002633563.1, gi|224475957, geneID|7551723
467 476658 476194 465 - 341         Phage phi 11 orf35 protein homolog locus|Sca_0465, protein_id|YP_002633564.1, gi|224475958, geneID|7550069
468 476997 476674 324 - 15         Phage repressor protein cI locus|Sca_0466, protein_id|YP_002633565.1, gi|224475959, geneID|7550070
469 477436 478203 768 + 438         Phage antirepressor protein locus|Sca_0467, protein_id|YP_002633566.1, gi|224475960, geneID|7550071
470 478218 478364 147 + 14         hypothetical protein locus|Sca_0468, protein_id|YP_002633567.1, gi|224475961, geneID|7550072
471 478581 478357 225 - -8         hypothetical protein locus|Sca_0469, protein_id|YP_002633568.1, gi|224475962, geneID|7550073
472 479524 479252 273 - 670         hypothetical protein locus|Sca_0470, protein_id|YP_002633569.1, gi|224475963, geneID|7550074
473 479588 479824 237 + 63         Phage phi 11 orf10 protein homolog locus|Sca_0471, protein_id|YP_002633570.1, gi|224475964, geneID|7550075
474 479905 480042 138 + 80         Phage protein  
475 480500 480628 129 + 457         Phage phi-ETA orf16 protein homolog locus|Sca_0473, protein_id|YP_002633572.1, gi|224475966, geneID|7550077
476 480585 481256 672 + -44         Phage essential recombination function protein, Erf locus|Sca_0474, protein_id|YP_002633573.1, gi|224475967, geneID|7550078
477 481256 481687 432 + -1     3: 1 3 4   Phage ssDNA binding protein gene_name|ssb, locus|Sca_0475, protein_id|YP_002633574.1, gi|224475968, geneID|7550079
478 481699 482250 552 + 11         Phage HNH endonuclease locus|Sca_0476, protein_id|YP_002633575.1, gi|224475969, geneID|7552147
479 482251 482925 675 + 0         Phage phi 11 orf14 protein homolog locus|Sca_0477, protein_id|YP_002633576.1, gi|224475970, geneID|7550080
480 482922 483683 762 + -4         Phage replication initiation protein locus|Sca_0478, protein_id|YP_002633577.1, gi|224475971, geneID|7550081
481 483684 484469 786 + 0     1: 2   Phage DNA helicase loader locus|Sca_0479, protein_id|YP_002633578.1, gi|224475972, geneID|7550082
482 484635 485042 408 + 165         Phage-encoded crossover junction endodeoxyribonuclease RusA (EC 3.1.22.4) locus|Sca_0480, protein_id|YP_002633579.1, gi|224475973, geneID|7550083
483 485051 485215 165 + 8         hypothetical protein locus|Sca_0481, protein_id|YP_002633580.1, gi|224475974, geneID|7550084
484 485425 485751 327 + 209         Phage phi 11 orf21 protein homolog locus|Sca_0482, protein_id|YP_002633581.1, gi|224475975, geneID|7550085
485 485752 486228 477 + 0         Phage protein locus|Sca_0483, protein_id|YP_002633582.1, gi|224475976, geneID|7550086

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|396513.4.peg.476 Phage essential recombination function protein, Erf
MTQEMNLFQKIADVKANIDGFTKDTKGYNYSYVSGSQVLHRIRNKMIENNLLLVPKTSEE
NYKQIDVTRFNKKAGREITTSEFIVEMKLTYVWINADKPEEQFEVTFYAVGQQDDVSKAH
GTALTYAERYFLMKFFNIPTDEDDADAKEKREQYTKPDAKAIGTLKEEMLKFSELMQSVG
KQVSVDDVQQKLGINDVQNLSNSQITVCIKKLDNWSKQAKENE

MD5 = 67b932ca1f1a9df5b801c82d341084d9


  DNA Sequence

>fig|396513.4.peg.476 Phage essential recombination function protein, Erf
atgacacaggaaatgaacctattccagaaaatagcagatgttaaagctaatatagatgga
ttcactaaagatactaaaggctacaactactcatatgttagtggttcgcaagtattacac
agaattagaaataagatgattgaaaacaatttattacttgtaccaaaaacatcagaagaa
aattacaaacaaattgatgtgacaagatttaataaaaaagctggtcgtgagattacaaca
tcagaatttatcgttgaaatgaaattgacttatgtgtggatcaatgcagacaaaccagaa
gaacagttcgaagtaacattttatgcagtaggacaacaagatgacgtttctaaagcacat
ggtactgcactaacttacgcagaaagatacttcttaatgaaattcttcaatattccaact
gatgaagatgatgcagatgcaaaagaaaagcgcgagcaatataccaaaccagatgctaaa
gcgattgggacattaaaagaagaaatgttgaaattcagcgaacttatgcagtctgtagga
aaacaagtaagcgttgatgatgtccagcaaaaactaggtatcaacgatgttcaaaattta
agtaatagtcaaatcactgtgtgcatcaaaaaattagataactggtcaaaacaagcgaag
gagaatgaataa


  DNA with Flanking Sequence

>fig|396513.4.peg.476 Phage essential recombination function protein, Erf
aaattagacactttcatcataacaaatttttacaggaggtactacatgggccttaaaaaa
tatgcacataaatttatcgacatgttagatgagtcggaaatcgaaggatatatagagtat
tcaaaagatccacgacaaactttaatatttgctcactatgacgtcaaatataattcaggt
attcgtttttttattgtaagtagtcaagatactgatgatgaacaactacgtacactcaag
cttattgaaaaactattgagtgacagaaaaaaggtgagttccaatgcctaaacaaacagt
tacctatcttattaagattactgataccaacctatatgttacaaacagacccactgaaca
aaacactacaatcaaatattcaaccagccttagtgacgctagagagttcaacggaatgga
agatgcagcagtagatatgacattccatactgcaataaaaaagacagttacagaaacaac
tgaatatgaggaggtcgcatatgacacaggaaatgaacctattccagaaaatagcagatg
ttaaagctaatatagatggattcactaaagatactaaaggctacaactactcatatgtta
gtggttcgcaagtattacacagaattagaaataagatgattgaaaacaatttattacttg
taccaaaaacatcagaagaaaattacaaacaaattgatgtgacaagatttaataaaaaag
ctggtcgtgagattacaacatcagaatttatcgttgaaatgaaattgacttatgtgtgga
tcaatgcagacaaaccagaagaacagttcgaagtaacattttatgcagtaggacaacaag
atgacgtttctaaagcacatggtactgcactaacttacgcagaaagatacttcttaatga
aattcttcaatattccaactgatgaagatgatgcagatgcaaaagaaaagcgcgagcaat
ataccaaaccagatgctaaagcgattgggacattaaaagaagaaatgttgaaattcagcg
aacttatgcagtctgtaggaaaacaagtaagcgttgatgatgtccagcaaaaactaggta
tcaacgatgttcaaaatttaagtaatagtcaaatcactgtgtgcatcaaaaaattagata
actggtcaaaacaagcgaaggagaatgaataatgattaacagagtcgtattagtaggtcg
tttaacaaaagatccagaattcagaacaaccccgagcggtgtagatgtagcaacattcac
actagcagtcaaccgtaattttaagagtaaaaatggagagcaacaggcggactttatcaa
ctgtgttgtattccgtaaacaagcagaaaacgtcaataattatttgaataaaggcagttt
agcaggtgtcgatggtcgcttacaatcacgcagctatgaaaataaggaaggacaacgtgt
gtttgtaaccgaagtagtagcagatagtgttcaattcttagagccaaagaataacaatca
acaaaacaatcaacctcaacaacaacaagggcaagcaccagcaggcaataacccgtttgg
aaatgctagcgacgatatttcagaatcggaactccctttctaggatgtgattaaatggct
gaaatttggaaagatgtggttggttatgaaggtatctacgaagtaagcaata


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
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  Functional Coupling

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  Attributes

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  Protein Families

No protein families found

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