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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|393117.11.peg.1624: Listeria monocytogenes FSL J1-194

This feature in The SEED Viewer

NCBI Taxonomy Id: 393117

Current Assignment: FIG00775553: hypothetical protein
Translate Function Assignments



Context on contig NZ_AARJ02000004 from base 40931 to 52020 (11090 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
1612 42289 40931 1359 -           Integrase [Bacteriophage A118] locus|LmonFS_020200008008, protein_id|ZP_05230094.1, gi|254825093, CDD:129090
1613 43093 42353 741 - 63         putative superinfection immunity protein locus|LmonFS_020200008013, protein_id|ZP_05230095.1, gi|254825094
1614 43837 43115 723 - 21         Phage A118 gp33 protein homolog locus|LmonFS_020200008018, protein_id|ZP_05230096.1, gi|254825095, CDD:118382
1615 44071 43853 219 - 15         Protein gp34 [Bacteriophage A118] locus|LmonFS_020200008023, protein_id|ZP_05230097.1, gi|254825096
1616 44585 44094 492 - 22         Phage protein locus|LmonFS_020200008028, protein_id|ZP_05230098.1, gi|254825097, CDD:114812
1617 44923 44618 306 - 32         Repressor (CI-like) [Bacteriophage A118] locus|LmonFS_020200008033, protein_id|ZP_05230099.1, gi|254825098, CDD:128803
1618 45049 45291 243 + 125         Repressor (cro-like) [Bacteriophage A118] locus|LmonFS_020200008038, protein_id|ZP_05230100.1, gi|254825099, CDD:128803
1619 45295 45561 267 + 3         Protein gp37 [Bacteriophage A118] locus|LmonFS_020200008043, protein_id|ZP_05230101.1, gi|254825100
1620 45720 45490 231 - -72         Phage protein locus|LmonFS_020200008048, protein_id|ZP_05230102.1, gi|254825101
1621 45786 45980 195 + 65         FIG00774265: hypothetical protein locus|LmonFS_020200008053, protein_id|ZP_05230103.1, gi|254825102
1622 45992 46276 285 + 11         FIG00774252: hypothetical protein locus|LmonFS_020200008058, protein_id|ZP_05230104.1, gi|254825103
1623 46302 46583 282 + 25         Protein gp41 [Bacteriophage A118] locus|LmonFS_020200008063, protein_id|ZP_05230105.1, gi|254825104
1624 46615 46776 162 + 31         FIG00775553: hypothetical protein locus|LmonFS_020200008068, protein_id|ZP_05230106.1, gi|254825105
1625 47011 46769 243 - -8         Hypothetical protein, Lin0079 homolog [Bacteriophage A118] locus|LmonFS_020200008073, protein_id|ZP_05230107.1, gi|254825106
1626 47075 47854 780 + 63         Phage antirepressor protein / Antirepressor [Bacteriophage A118] locus|LmonFS_020200008078, protein_id|ZP_05230108.1, gi|254825107, CDD:112200
1627 47975 48508 534 + 120         Protein gp43 [Bacteriophage A118] locus|LmonFS_020200008083, protein_id|ZP_05230109.1, gi|254825108
1628 48505 48720 216 + -4         Protein gp44 [Bacteriophage A118] locus|LmonFS_020200008088, protein_id|ZP_05230110.1, gi|254825109
1629 48829 49017 189 + 108         Protein gp45 [Bacteriophage A118] locus|LmonFS_020200008093, protein_id|ZP_05230111.1, gi|254825110, CDD:119173
1630 49250 49438 189 + 232         FIG00776009: hypothetical protein locus|LmonFS_020200008098, protein_id|ZP_05230112.1, gi|254825111
1631 49435 50316 882 + -4         FIG00775957: hypothetical protein locus|LmonFS_020200008103, protein_id|ZP_05230113.1, gi|254825112
1632 50387 51079 693 + 70         Prophage Lp1 protein 19 locus|LmonFS_020200008108, protein_id|ZP_05230114.1, gi|254825113
1633 51100 52020 921 + 20         DnaD domain protein locus|LmonFS_020200008113, protein_id|ZP_05230115.1, gi|254825114, CDD:113268

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|393117.11.peg.1624 FIG00775553: hypothetical protein
MKDFEMMEAIKQKRLECKLVILENFESSFKEALNKGDSAMVSALAESLKTVIK

MD5 = 432a6091469ae62d4c09f24c7a0af973


  DNA Sequence

>fig|393117.11.peg.1624 FIG00775553: hypothetical protein
atgaaggactttgaaatgatggaagcaattaaacaaaaacggcttgaatgtaaattagta
attttggaaaattttgaatcgagttttaaagaagccctcaataagggagattccgccatg
gtgtcggctttagcggaatcattgaaaacagttattaaatag


  DNA with Flanking Sequence

>fig|393117.11.peg.1624 FIG00775553: hypothetical protein
tgttatggagtattagaaatcaatggaaaacaattaagaaaaggaattacagcggtcaag
ttagatttaaaagcaggatcattaccagttgtacaagtggaatatcacccattcacgatc
agcgaagaaatgcaaagactaatatggtctggaaaatactaaaaatcataatttaggagg
aagaaaaatgaataacatcaaacaagcaattattaaattagaaacaattttagaaaatgg
taatgaaaaagagaatagattattcgttaagtacaacactataaaaaacattttagattt
acttgaaaaagatcaagagctaaaaatcatcgaaatggaagtagagctgaatggagtaga
ggattccatagaaaacgccgctttgttagaaaagagattaagtgaagccaaatctttggt
ggaagacttggctaacactataaactcgttagaaattaaggtgaagtgaagcttttccaa
aaagaataggaggttaaaaaatgaaggactttgaaatgatggaagcaattaaacaaaaac
ggcttgaatgtaaattagtaattttggaaaattttgaatcgagttttaaagaagccctca
ataagggagattccgccatggtgtcggctttagcggaatcattgaaaacagttattaaat
agtgaactcaatgtaaaggacatcatttgagttcattagaaaaactttcgataaatcgtt
ttctaactcgtttgcacccttataaatgattttgtaagttttatcggcttctaaataaaa
atcatttaaatcaaaacttttgttatctggaaaagatgtaatgcttataacgcccattag
agcaatgggctggtcatcagagatacctttgaacattatatccatgcgatttttcacaaa
ttccacctcccttcacaaaaactatagcactgtgaaagggcgaacagaaaggagaacaaa
atgtcaaatttacaagtaattgcaaatgatatgttgccagttttagaaaatgaaaaaggc
gagaaatttgtaaatgcacgggaactacatcaaagcttgcaagttggaaaaaaattcact
acttggattactgacaagcttagtaattatagattttcaaaggatgaagactatttcccg
attttgggagaaagtacattcg


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
cmr|NT01LI0083 Listeria innocua CLIP 11262     hypothetical protein
fig|272626.9.peg.85 Listeria innocua Clip11262 FIG   FIG00775553: hypothetical protein
fig|393125.10.peg.2710 Listeria monocytogenes FSL R2-503 FIG   FIG00775553: hypothetical protein
fig|393125.3.peg.3399 Listeria monocytogenes FSL R2-503 FIG   FIG00775553: hypothetical protein
fig|393130.3.peg.1541 Listeria monocytogenes J0161 FIG   FIG00775553: hypothetical protein
fig|393130.8.peg.2921 Listeria monocytogenes J0161 FIG   FIG00775553: hypothetical protein
fig|393131.3.peg.2222 Listeria monocytogenes J2818 FIG   FIG00775553: hypothetical protein
fig|393131.7.peg.2891 Listeria monocytogenes J2818 FIG   FIG00775553: hypothetical protein
gb|EEW20272.1 Listeria monocytogenes FSL R2-503     conserved hypothetical protein
gi|254825105 Listeria monocytogenes FSL J1-194 NCBI   hypothetical protein LmonFS_08068
gi|254854272 Listeria monocytogenes FSL R2-503 NCBI   conserved hypothetical protein
gi|254901053 Listeria monocytogenes J0161 NCBI   hypothetical protein LmonJ_14603
gi|254913997 Listeria monocytogenes J2818 NCBI   hypothetical protein LmonJ2_14413
gi|255018342 Listeria monocytogenes FSL F2-515 NCBI   hypothetical protein LmonF_12656
gi|255028133 Listeria monocytogenes LO28 NCBI   hypothetical protein LmonL_00664
gi|258607664 Listeria monocytogenes FSL R2-503 NCBI   conserved hypothetical protein
img|640974030 Listeria monocytogenes J0161 IMG   hypothetical protein
img|640976175 Listeria monocytogenes J2818 IMG   hypothetical protein
img|641750035 Listeria monocytogenes FSL F2-515 IMG   hypothetical protein
img|641752708 Listeria monocytogenes FSL J1-194 IMG   hypothetical protein
img|641767665 Listeria monocytogenes FSL R2-503 IMG   hypothetical protein
img|641770214 Listeria monocytogenes LO28 IMG   hypothetical protein
ref|ZP_05230106.1 Listeria monocytogenes FSL J1-194 RefSeq   hypothetical protein LmonFS_08068
ref|ZP_05243620.1 Listeria monocytogenes FSL R2-503 RefSeq   conserved hypothetical protein
ref|ZP_05260977.1 Listeria monocytogenes J0161 RefSeq   hypothetical protein LmonJ_14603
ref|ZP_05264009.1 Listeria monocytogenes J2818 RefSeq   hypothetical protein LmonJ2_14413
ref|ZP_05290468.1 Listeria monocytogenes FSL F2-515 RefSeq   hypothetical protein LmonF_12656
ref|ZP_05300084.1 Listeria monocytogenes LO28 RefSeq   hypothetical protein LmonL_00664


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  Functional Coupling

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  Attributes

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  Protein Families

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