The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
The SEED


FIG search

Protein fig|391037.6.peg.3823: Salinispora arenicola CNS-205

This feature in The SEED Viewer

NCBI Taxonomy Id: 391037

Current Assignment: Mobile element protein
Translate Function Assignments



Context on contig NC_009953 from base 4315665 to 4328000 (12336 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
3812 4316726 4315665 1062 -           hypothetical protein locus|Sare_3782, protein_id|YP_001538566.1, gi|159039313, geneID|5703909
3813 4316945 4316829 117 - 102         hypothetical protein  
3814 4317257 4317078 180 - 132         hypothetical protein locus|Sare_3784, protein_id|YP_001538568.1, gi|159039315, geneID|5703911
3815 4317529 4317254 276 - -4         FIG01042497: hypothetical protein locus|Sare_3785, protein_id|YP_001538569.1, gi|159039316, geneID|5703912
3816 4317924 4317529 396 - -1         hypothetical protein locus|Sare_3786, protein_id|YP_001538570.1, gi|159039317, InterPro:IPR001646, geneID|5703913
3817 4318376 4318146 231 - 221         FIG01043212: hypothetical protein locus|Sare_3787, protein_id|YP_001538571.1, gi|159039318, geneID|5703914
3818 4318617 4318378 240 - 1         FIG01042697: hypothetical protein locus|Sare_3788, protein_id|YP_001538572.1, gi|159039319, geneID|5703915
3819 4319057 4318614 444 - -4         hypothetical protein locus|Sare_3789, protein_id|YP_001538573.1, gi|159039320, geneID|5703916
3820 4319344 4319129 216 - 71         hypothetical protein locus|Sare_3790, protein_id|YP_001538574.1, gi|159039321, geneID|5703917
3821 4320099 4319341 759 - -4         Prophage antirepressor protein locus|Sare_3791, protein_id|YP_001538575.1, gi|159039322, InterPro:IPR003497, geneID|5703918
3822 4320356 4320189 168 - 89         hypothetical protein locus|Sare_3792, protein_id|YP_001538576.1, gi|159039323, geneID|5703919
3823 4320819 4322435 1617 + 462         Mobile element protein locus|Sare_3794, protein_id|YP_001538578.1, gi|159039325, InterPro:IPR002104, geneID|5704543
rna.39 4322549 4322473 77 - 37         tRNA-Met-CAT  
3824 4323932 4322691 1242 - 141     2: 2 3   Phytoene dehydrogenase and related proteins locus|Sare_3795, protein_id|YP_001538579.1, gi|159039326, InterPro:IPR002937, InterPro:IPR013027, geneID|5704545
3825 4326066 4323922 2145 - -11         Integral membrane protein Strop_2920/Strop_3419, MMPL dimer type locus|Sare_3796, protein_id|YP_001538580.1, gi|159039327, InterPro:IPR000731, InterPro:IPR004869, geneID|5704546
rna.40 4326401 4326329 73 - 262         tRNA-Asn-GTT  
3826 4326663 4327085 423 + 261     1: 1   Small hypothetical protein Hyp1 locus|Sare_3797, protein_id|YP_001538581.1, gi|159039328, geneID|5704548
3827 4328000 4327191 810 - 105         Efflux ABC transporter, permease protein locus|Sare_3798, protein_id|YP_001538582.1, gi|159039329, InterPro:IPR000412, InterPro:IPR013525, InterPro:IPR013526, geneID|5704549

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|391037.6.peg.3823 Mobile element protein
MASRRGTRTTRDREGKGILRRPRHLPRRCARRTRTRSLSRRPRARATATTRGPTDPPDAG
RPQRLGGRQARTTGDAQDACRPRRPRRTRQGTLMPRRRYPTISKGSDGWFHAWVTVGTKS
NGRPDQRHIKRATVEQVETRIDELLEQARTATVPRGGRGPTVNTWLISTYLETIAPGKID
PTTVQGYRSKVTNYVVPVIGALRMDRVIADNIDAVYTEMRRRGLADATVLQVHRILSRAW
KVAARRRVVPRNIMLDVDPPSAKRQEMEPLTEDEAKATLAAAHRRRNSARWSVGFAVGTR
QGEALGLRWPHLLVECDDCGATVKLADWWAGQLVQCRGCNSVNVGAVARIWWQLHRRAHE
HGCAPQAPWPCGRRRGGNCPNKRLVLRSGEIHVGGGLILKEPKGKSKRTIPIPQELVDSL
RAHYEVQNLERMVAEAAYASHGFVFADQLGGPIDPAEDWREWKTLIADAGVRDARVHDGR
HTAATLLLAQGVDIRVVQELLGHSSIKVTEGYTHVASKLARDATERMGKRLFGTPGTP

MD5 = 19efa9c925294f528169001b1bd2bcb0


  DNA Sequence

>fig|391037.6.peg.3823 Mobile element protein
gtggcgtcgcggcgagggacgcgaactaccagagatcgagaaggtaagggcattttgcgc
cggcctcggcatctcccccgccggtgcgctcgccgcactcggactcgatccctctcgcga
cgaccccgagcccgagccaccgctaccacccgaggtccgacagatcctccggacgctggc
cgaccccaacgtctcggaggcagacaagctcgtactacaggagatgctcaagatgcttgc
cgaccgcgcagaccgcgccggacgaggcagggcaccctaatgccccgccgccggtatccc
accattagcaaaggcagtgacgggtggtttcatgcctgggtcacggtgggcacgaagagc
aacgggcggcccgatcagcggcacatcaaacgggccacggtagagcaggtagagacacgg
atagacgagctactagagcaggcccgcactgctacggtcccgcgcggcggtcgcggaccc
accgttaacacctggctgatcagtacctatctggagacaatcgcccccggaaagattgat
ccaacgaccgtccagggctaccggagtaaggtcacaaattacgttgtgccagttattggt
gcccttcggatggatcgcgtaatagctgataacatcgatgccgtttacacagagatgcgg
cgtcgaggtctcgctgatgccacggtactacaggtccaccgtattctttcccgcgcatgg
aaagttgccgctcggcgacgtgttgtgccacgaaacatcatgctcgatgtcgacccgcca
agtgcaaagcgtcaagagatggaaccgctcacggaagacgaggctaaggcgacgctggcg
gcagcccaccgacgccgcaactcggcccgctggtccgtcgggttcgcggttggcacccgc
cagggtgaggcgctcggcctacgttggccgcacctcctcgtagagtgcgacgactgcggg
gcaacggtgaagttggcggactggtgggccgggcaactggtgcagtgccgaggctgcaac
tcggtgaatgtcggcgccgtcgcccggatctggtggcagcttcaccggcgagcgcacgaa
cacggctgcgctcctcaggccccatggccttgtggtcgacgtcgtggcggcaactgccca
aacaaacgactggtcctgcgatcgggcgagattcacgtcggcggcggactgattcttaag
gaacccaagggaaagagcaagcggaccattccgatcccgcaggaacttgtcgatagcctc
cgagcgcactacgaagtgcagaacttggagcgaatggtggctgaggctgcatacgcctcg
catggcttcgtcttcgccgaccagctcggcggcccgatcgacccagccgaagactggcgg
gagtggaagaccctaatcgcggatgccggcgtacgggacgctcgggtgcatgacggccgg
catactgcggcaacgctgcttctcgctcagggagtcgacatccgggtggtccaggagctg
cttgggcactcctcgatcaaggtcaccgagggatacacccacgtcgcctcgaagctggcc
cgggacgctacggagcgtatgggaaagcggctgttcggaacgccaggtacaccctga


  DNA with Flanking Sequence

>fig|391037.6.peg.3823 Mobile element protein
ttgacgagttgccagacggtccgcgggcccaggtccaagagctcagctgcacgcggcacc
ttgtaggcgatctgctccgattcagtgccactcgcagcattgctgtgtgatgcgttgcca
tgcatggcactaccgtatcgcaatgccacgcatagcatcacatcggccgttcggatgatt
ctgcacctggccaccagagctaccctgtaagccatgcatagccgtgcaggaccaagagtc
ctccagctgagaccgcgcactatcggcgcacgtcaccgcaaccgtccacggcatcgctgc
cgtccacgagataacaggcccgcgaatggcacctacggtgacctcgtggcagcatcccca
tcccctacaccgtcacccgaggtcgcgcgagcgcgcttcgcagccttcgtcgcccgtgct
ctggcatccgcaggcgaccgcggcatgaccaacaaagacatcgcgaaggcaacaggggta
ggaccgtccacgttccaccggtggcgtcgcggcgagggacgcgaactaccagagatcgag
aaggtaagggcattttgcgccggcctcggcatctcccccgccggtgcgctcgccgcactc
ggactcgatccctctcgcgacgaccccgagcccgagccaccgctaccacccgaggtccga
cagatcctccggacgctggccgaccccaacgtctcggaggcagacaagctcgtactacag
gagatgctcaagatgcttgccgaccgcgcagaccgcgccggacgaggcagggcaccctaa
tgccccgccgccggtatcccaccattagcaaaggcagtgacgggtggtttcatgcctggg
tcacggtgggcacgaagagcaacgggcggcccgatcagcggcacatcaaacgggccacgg
tagagcaggtagagacacggatagacgagctactagagcaggcccgcactgctacggtcc
cgcgcggcggtcgcggacccaccgttaacacctggctgatcagtacctatctggagacaa
tcgcccccggaaagattgatccaacgaccgtccagggctaccggagtaaggtcacaaatt
acgttgtgccagttattggtgcccttcggatggatcgcgtaatagctgataacatcgatg
ccgtttacacagagatgcggcgtcgaggtctcgctgatgccacggtactacaggtccacc
gtattctttcccgcgcatggaaagttgccgctcggcgacgtgttgtgccacgaaacatca
tgctcgatgtcgacccgccaagtgcaaagcgtcaagagatggaaccgctcacggaagacg
aggctaaggcgacgctggcggcagcccaccgacgccgcaactcggcccgctggtccgtcg
ggttcgcggttggcacccgccagggtgaggcgctcggcctacgttggccgcacctcctcg
tagagtgcgacgactgcggggcaacggtgaagttggcggactggtgggccgggcaactgg
tgcagtgccgaggctgcaactcggtgaatgtcggcgccgtcgcccggatctggtggcagc
ttcaccggcgagcgcacgaacacggctgcgctcctcaggccccatggccttgtggtcgac
gtcgtggcggcaactgcccaaacaaacgactggtcctgcgatcgggcgagattcacgtcg
gcggcggactgattcttaaggaacccaagggaaagagcaagcggaccattccgatcccgc
aggaacttgtcgatagcctccgagcgcactacgaagtgcagaacttggagcgaatggtgg
ctgaggctgcatacgcctcgcatggcttcgtcttcgccgaccagctcggcggcccgatcg
acccagccgaagactggcgggagtggaagaccctaatcgcggatgccggcgtacgggacg
ctcgggtgcatgacggccggcatactgcggcaacgctgcttctcgctcagggagtcgaca
tccgggtggtccaggagctgcttgggcactcctcgatcaaggtcaccgagggatacaccc
acgtcgcctcgaagctggcccgggacgctacggagcgtatgggaaagcggctgttcggaa
cgccaggtacaccctgacgtacacccttgatcttggcgtacgccaggttttgcctggtgg
ggcgggcgggacttgaacccgcgaccgagggattatgagtcccctgctctgaccggctga
gctaccgccccggcaccgcgctggatcgtacccgcctggtcgatcaacggccagcacgaa
ccagcttccctcggtcacggcgtcagacgcagtagcacgatgggcaacgcgagaataaca
gcgtgcatccggcctgccccgccgaggagccgtcaggccggtggtctcaggtacgcgagg
accgcgccggcggtacgccagccgctggtcagcgcaccctggatcgacgggctgtcccga
tggtcaccagcgacgaagaggccacccccgagtgccaccggccgccgcagccggccctgc
ggcggcggtgcggcggggagcgcctcgggaagggtgacggtggtcaggtgactccagtcg
gctgtggagcgtccgtagaggcgggccagttcggccc


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
fig|391037.6.peg.3772 Salinispora arenicola CNS-205 FIG   Mobile element protein


  Links to Related Entries in Other Sites

This PEG has no links.
add a new link


  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key
Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer



Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options


|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions


FIG search