The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
 The SEED


FIG search

Protein fig|387910.2.peg.7: Siphoviridae Staphylococcus aureus phage phiNM4

This feature in The SEED Viewer

NCBI Taxonomy Id: 387910

Current Assignment: Phage protein
Translate Function Assignments


Context on contig DQ530362 from base 94 to 9588 (9495 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
1 1299 94 1206 -       1: 2   Phage integrase protein_id|ABF73226.1, gene_name|int, gi|104641918
2 1410 1589 180 + 110         Phage excisionase protein_id|ABF73227.1, gi|104641919
3 2501 1569 933 - -21         Hypothetical protein, SAV0849 homolog [SA bacteriophages 11, Mu50B] protein_id|ABF73228.1, gi|104641920
4 2997 2533 465 - 31         Phage protein protein_id|ABF73229.1, gi|104641921
5 3324 3010 315 - 12         Phage repressor protein cI protein_id|ABF73230.1, gi|104641922
6 3476 3712 237 + 151         Phage transcriptional regulator cro protein_id|ABF73231.1, gi|104641923
7 3726 3905 180 + 13         Phage protein protein_id|ABF73232.1, gi|104641924
8 4488 4006 483 - 100         ORF029 protein_id|ABF73233.1, gi|104641925
9 4548 5297 750 + 59         Phage antirepressor protein protein_id|ABF73234.1, gi|104641926
10 5313 5531 219 + 15         Phage phi 11 orf9 protein homolog protein_id|ABF73235.1, gi|104641927
11 5561 5824 264 + 29         Phage protein protein_id|ABF73236.1, gi|104641928
12 5836 5997 162 + 11         Phage phi 11 orf10a protein homolog protein_id|ABF73237.1, gi|104641929
13 6089 6349 261 + 91         Phage phi 11 orf11 protein homolog protein_id|ABF73238.1, gi|104641930
14 6359 6580 222 + 9         Phage phi-ETA orf16 protein homolog protein_id|ABF73239.1, gi|104641931
15 6573 7361 789 + -8         Phage phi 11 orf12 protein homolog protein_id|ABF73240.1, gi|104641932
16 7390 7941 552 + 28     1: 1   Phage ssDNA binding protein protein_id|ABF73241.1, gi|104641933
17 7954 8625 672 + 12         Phage phi 11 orf14 protein homolog protein_id|ABF73242.1, gi|104641934
18 9588 8731 858 - 105         Phage protein protein_id|ABF73243.1, gi|104641935

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|387910.2.peg.7 Phage protein
MEQTIKQFLEFRKQFTPAQWHEINRIIDGQFSKKAAELQLDDQDVEVIKNIITQQKIMK

MD5 = 853e4e0ac219d267ebeb9859d1167c9d


  DNA Sequence

>fig|387910.2.peg.7 Phage protein
atggaacaaacaatcaaacaatttttagaatttagaaagcaattcacacccgcacagtgg
cacgaaatcaacagaattattgacggacaatttagtaaaaaagccgccgagctacaactc
gacgaccaagatgttgaggttattaaaaatattattactcaacaaaagattatgaagtaa


  DNA with Flanking Sequence

>fig|387910.2.peg.7 Phage protein
ttgtacagtagcttcagttttaccaatttttcttcctagttcggccaaagtcataccttg
tttttctcttgattgtttcattctttttgaaaagcacatcgtaatacagctccttttact
tgatagttctattataaggaaaactttcggcatttgcaatatttttctaaaaaactttcg
taaaatgcttgacctcttttgtaacatcatgataagattacttacgtaatgcgaaaggtg
gtgaaaagaaatgcctatagatactaaacttttgaaatctaaaatggctttgaaagaaca
taacatcaaaaccctttctgaagaaattggtgtcaatagagatactttatctaacatgat
acacgggagaacaaaaccatcctacccggtaataaatggtatttattttgcgttagaatt
gacacctcaagaaggaagagatattttttttaacgaagacttacgcaaaaagaaagtttt
aacttaaggaggaacaacaaatggaacaaacaatcaaacaatttttagaatttagaaagc
aattcacacccgcacagtggcacgaaatcaacagaattattgacggacaatttagtaaaa
aagccgccgagctacaactcgacgaccaagatgttgaggttattaaaaatattattactc
aacaaaagattatgaagtaacaatttgaataaaagttattcaaaaatcacgaaaggaaga
tacaaaatgatgctgaccaacacactactagcaattcactttttcatgaatttagcgata
ttaattatgctcgtaagaatcggtagagattaacttatactttttaagtttgtttattcg
ttgattagaaacaatctttataaacgcaggttctaattcgaatttatataaaaactctga
tgacgaattagctatcataacttctggtttatctaattgtttatcgattggagcatgcaa
ataacttggattatatataccgagagatgaatattcatcagattccaatactacgttaat
aggtgttaaaacatttttgtttttatctaaaaatattaattcttctaaagtatgagttct
agacgagtcattagcgacgacaaaatttaattctacaaaattattttcatagtagaaatt
aagatcgctaataacaaaactgaacttattttgagaacga


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
add a new link

  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key		 Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer

Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options

|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions
FIG search