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SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
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Protein fig|387910.2.peg.5: Siphoviridae Staphylococcus aureus phage phiNM4

This feature in The SEED Viewer

NCBI Taxonomy Id: 387910

Current Assignment: Phage repressor protein cI
Translate Function Assignments


Context on contig DQ530362 from base 94 to 8625 (8532 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
1 1299 94 1206 -       1: 1   Phage integrase protein_id|ABF73226.1, gene_name|int, gi|104641918
2 1410 1589 180 + 110         Phage excisionase protein_id|ABF73227.1, gi|104641919
3 2501 1569 933 - -21         Hypothetical protein, SAV0849 homolog [SA bacteriophages 11, Mu50B] protein_id|ABF73228.1, gi|104641920
4 2997 2533 465 - 31         Phage protein protein_id|ABF73229.1, gi|104641921
5 3324 3010 315 - 12         Phage repressor protein cI protein_id|ABF73230.1, gi|104641922
6 3476 3712 237 + 151         Phage transcriptional regulator cro protein_id|ABF73231.1, gi|104641923
7 3726 3905 180 + 13         Phage protein protein_id|ABF73232.1, gi|104641924
8 4488 4006 483 - 100         ORF029 protein_id|ABF73233.1, gi|104641925
9 4548 5297 750 + 59         Phage antirepressor protein protein_id|ABF73234.1, gi|104641926
10 5313 5531 219 + 15         Phage phi 11 orf9 protein homolog protein_id|ABF73235.1, gi|104641927
11 5561 5824 264 + 29         Phage protein protein_id|ABF73236.1, gi|104641928
12 5836 5997 162 + 11         Phage phi 11 orf10a protein homolog protein_id|ABF73237.1, gi|104641929
13 6089 6349 261 + 91         Phage phi 11 orf11 protein homolog protein_id|ABF73238.1, gi|104641930
14 6359 6580 222 + 9         Phage phi-ETA orf16 protein homolog protein_id|ABF73239.1, gi|104641931
15 6573 7361 789 + -8         Phage phi 11 orf12 protein homolog protein_id|ABF73240.1, gi|104641932
16 7390 7941 552 + 28     1: 2   Phage ssDNA binding protein protein_id|ABF73241.1, gi|104641933
17 7954 8625 672 + 12         Phage phi 11 orf14 protein homolog protein_id|ABF73242.1, gi|104641934

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|387910.2.peg.5 Phage repressor protein cI
MCFSKRMKQSREKQGMTLAELGRKIGKTEATVQRYESGNIKNLKNDTIESIATALNVNPA
YLMGWVEENDDEVQHRAAHLEGELTDDEWQRVLDYADYIRSKRK

MD5 = cdb2e2460adbd7aeb595614fb19e9cba


  DNA Sequence

>fig|387910.2.peg.5 Phage repressor protein cI
atgtgcttttcaaaaagaatgaaacaatcaagagaaaaacaaggtatgactttggccgaa
ctaggaagaaaaattggtaaaactgaagctactgtacaacgttatgaaagcggaaatatc
aaaaatctaaaaaacgatactatagaaagtatagctactgcattaaatgttaatcctgcg
tatttaatggggtgggttgaagaaaacgatgatgaagtacaacatcgtgcagctcattta
gaaggagaattaactgatgacgagtggcaaagagttttagattatgcagattatataaga
agtaaacgtaagtaa


  DNA with Flanking Sequence

>fig|387910.2.peg.5 Phage repressor protein cI
tttactaaattgtccgtcaataattctgttgatttcgtgccactgtgcgggtgtgaattg
ctttctaaattctaaaaattgtttgattgtttgttccatttgttgttcctccttaagtta
aaactttctttttgcgtaagtcttcgttaaaaaaaatatctcttccttcttgaggtgtca
attctaacgcaaaataaataccatttattaccgggtaggatggttttgttctcccgtgta
tcatgttagataaagtatctctattgacaccaatttcttcagaaagggttttgatgttat
gttctttcaaagccattttagatttcaaaagtttagtatctataggcatttcttttcacc
acctttcgcattacgtaagtaatcttatcatgatgttacaaaagaggtcaagcattttac
gaaagttttttagaaaaatattgcaaatgccgaaagttttccttataatagaactatcaa
gtaaaaggagctgtattacgatgtgcttttcaaaaagaatgaaacaatcaagagaaaaac
aaggtatgactttggccgaactaggaagaaaaattggtaaaactgaagctactgtacaac
gttatgaaagcggaaatatcaaaaatctaaaaaacgatactatagaaagtatagctactg
cattaaatgttaatcctgcgtatttaatggggtgggttgaagaaaacgatgatgaagtac
aacatcgtgcagctcatttagaaggagaattaactgatgacgagtggcaaagagttttag
attatgcagattatataagaagtaaacgtaagtaaaggatgtatcagatgggattatatg
aagaaactttaatacaacatgattatattgaaataagagaggctgatgtgcttccagata
atttagacggggtatggttaggagatttaattttgataaagcgtggtttatcagatagag
aaaaagcaggaattctcttcgaagaattagcgcataataaacttacatacggtgatatag
ccgattactcgaatttcaacaatcgcaagttcgaaaattacgcaagacgacacggcttta
tctcagcagtcccgttacgcgaaattgtggaagcgcacaattacggtgtacgtaacttgt
atgagttgtctgagtatctacaattaagtgaagaatacatattagaagcaatagaacaat
ataaaaagatatatggtattggtactcactacggcgaattctcaattacatttgagccgt
tgagagtttttaaattgcatcatattgattaacagcgcctatgtggcgtgaggag


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

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  Functional Coupling

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  Attributes

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  Protein Families

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