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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|387910.2.peg.43: Siphoviridae Staphylococcus aureus phage phiNM4

This feature in The SEED Viewer

NCBI Taxonomy Id: 387910

Current Assignment: Phage portal (connector) protein
Translate Function Assignments


Context on contig DQ530362 from base 13666 to 25464 (11799 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
30 13666 14115 450 +           Phage protein protein_id|ABF73255.1, gi|104641947
31 14112 14396 285 + -4         Phage protein protein_id|ABF73256.1, gi|104641948
32 14389 14637 249 + -8         Phage phi 11 orf23 protein homolog protein_id|ABF73257.1, gi|104641949
33 14630 15166 537 + -8     1: 4   Phage dimeric dUTPase (EC 3.6.1.23) protein_id|ABF73258.1, gi|104641950
34 15203 15409 207 + 36         Phage phi 11 orf26a protein homolog protein_id|ABF73259.1, gi|104641951
35 15406 15600 195 + -4         Hypothetical protein, SAV0878 homolog [SA bacteriophages 11, Mu50B] protein_id|ABF73260.1, gi|104641952
36 15597 15800 204 + -4         Hypothetical protein, SAV0879 homolog [SA bacteriophages 11, Mu50B] protein_id|ABF73261.1, gi|104641953
37 15793 16029 237 + -8         Phage protein protein_id|ABF73262.1, gi|104641954
38 16022 16408 387 + -8         Hypothetical protein, SAV0881 homolog [SA bacteriophages 11, Mu50B] protein_id|ABF73263.1, gi|104641955
39 16405 16578 174 + -4         Phage integrase regulator RinB protein_id|ABF73264.1, gene_name|rinB, gi|104641956
40 16579 16980 402 + 0         Phage integrase regulator RinA protein_id|ABF73265.1, gi|104641957
41 17364 17825 462 + 383         Phage terminase, small subunit protein_id|ABF73266.1, gi|104641958
42 17818 19041 1224 + -8     2: 2 1   Phage terminase, large subunit protein_id|ABF73267.1, gi|104641959
43 19038 20462 1425 + -4     2: 2 1   Phage portal (connector) protein protein_id|ABF73268.1, gi|104641960
44 20431 21384 954 + -32     1: 1 isu Phage minor capsid protein protein_id|ABF73269.1, gi|104641961
45 21386 21592 207 + 1         Phage tail, tail length tape-measure protein # fragment protein_id|ABF73270.1, gi|104641962
46 21695 22279 585 + 102         Phage capsid and scaffold protein_id|ABF73271.1, gi|104641963
47 22296 23210 915 + 16     1: 1 isu Phage major capsid protein protein_id|ABF73272.1, gi|104641964
48 23222 23365 144 + 11         hypothetical protein protein_id|ABF73273.1, gi|104641965
49 23371 23721 351 + 5     1: 1 idu(2) Phage capsid and scaffold protein_id|ABF73274.1, gi|104641966
50 23733 24068 336 + 11     1: 3   Phage head-tail protein protein_id|ABF73275.1, gi|104641967
51 24055 24468 414 + -14     1: 1 idu(2) Phage phi 11 orf37 protein homolog protein_id|ABF73276.1, gi|104641968
52 24481 24906 426 + 12         Phage protein protein_id|ABF73277.1, gi|104641969
53 24907 25464 558 + 0         Phage major tail tube protein protein_id|ABF73278.1, gi|104641970

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

Subsystem Curator Role
Phage_head_and_packaging mellabee Phage portal (connector) protein
Phage_packaging_machinery RamyA Phage portal protein


  Protein Sequence

>fig|387910.2.peg.43 Phage portal (connector) protein
MTLYKLIDDIEAQGILPKHIEALIESHKDDRERMVNLYNRYKTHIDYVPIFKRRPIEEKE
DFETGGNVRRLDVSVNNKLNNSFDSEIVDTRVGYLHGVPVTYDLDENAEKNEKLKKFITN
FAIRNSVDDEDSEIGKMAAICGYGARLAYIDTNGDVRIKNIDPYNVIFVGDNILEPTYSL
RYFYEKDDDNGTDYVYAEFYDNTYYYVFRGEGIDALQEVGRYEHLFDYNPLFGVPNNKEM
IGDAEKVIHLIDAYDLTMSDASSEISQTRLAYLVLRGMGMSEEMIQETQKSGAFELFDKD
MDVKYLTKDVNDTMIENHLDRIEKNIMRFAKSVNFNSDEFNGNVPIIGMKLKLMALENKC
MTFERKMTAMLRYQFKVILSALKRKGYNLDDDSYLNLIFKFTRNIPVNKLEESQVLINLK
GQVSERTRLGQSQLVDDVDYELDEMEKESLEFNDKLPDIDEGDANDKSQNNQSE

MD5 = 48b7440fa3304619036700184bf117f2


  DNA Sequence

>fig|387910.2.peg.43 Phage portal (connector) protein
atgacattgtataagttaatagatgatattgaagcacaaggaatattgcctaagcatatt
gaggctctaatagagtcacataaagacgatagagagagaatggttaatctctataataga
tacaagacacatattgactatgtaccaatattcaaacgtcgaccaattgaagaaaaagaa
gattttgaaactggtggaaatgtaaggcgattagacgtgtctgttaataacaaacttaac
aactcttttgacagcgaaattgttgatacacgtgttggttatttacatggtgttcctgtt
acttatgatttagatgaaaacgcagaaaaaaacgaaaagttgaaaaagtttataaccaac
tttgccattagaaatagtgttgatgatgaggattctgaaataggtaaaatggcagcaatt
tgcggatatggtgctaggttagcatatattgatacgaatggtgatgttaggattaagaat
atagatccctataatgttatttttgttggcgacaatattttagaacctacatactcattg
cgctacttttatgaaaaagatgatgataatggcactgattatgtgtacgcagagttttac
gataatacttattattatgtatttcgaggagaaggtattgacgctttgcaagaagttgga
cgatatgaacatttatttgattacaatccattgtttggtgtacctaacaacaaagagatg
ataggagatgctgaaaaggttattcacttaattgacgcatatgatttaacaatgagcgat
gcatcaagtgagattagtcagacacgtttagcataccttgtgttacgcggtatgggtatg
agtgaagaaatgattcaagaaacacaaaagagtggcgcatttgagttgttcgacaaagat
atggacgttaaatacttaacaaaagatgtaaatgacacaatgattgagaaccatttagat
cgaatcgaaaagaatatcatgcgttttgcaaagtcagtaaactttaattctgacgagttt
aacggaaatgtacctatcattggaatgaaacttaaacttatggctttagagaacaagtgt
atgacgtttgagcgtaagatgacagctatgttgaggtatcaattcaaagttattttatct
gcattaaagcgtaaagggtacaacttggatgatgatagttatttaaacctgatatttaag
ttcactcgtaacattccagttaataagttagaagaatcacaagtgctaattaacctgaag
ggacaagtttcagaacgaacaaggttaggacaatcacaactagttgatgatgttgattac
gaattagacgaaatggaaaaagaaagtcttgaatttaatgacaaattacctgacatagat
gaaggtgacgcaaatgacaaatcccaaaataaccaatcagaatga


  DNA with Flanking Sequence

>fig|387910.2.peg.43 Phage portal (connector) protein
aaagcagatgaactggacgacatacctatcaaagaatactttgctggtgtcgactggggt
tacgagcactatggatctattgtgttaataggacgaggtatagatggtaacttttatttt
attgaggagcacgcacaccaatttaagtttattgatgattgggtggttattgcaaaagat
attgtaagtagatatggcaatattaatttttactgcgatactgcacgacctgaatacatc
actgaatttagaagacatagattacgtgcaattaacgctgataaaagtaaactatcgggt
gtagaggaagttgctaagttgttcaaacaaaacaagttacttgttctttatgataatatg
gataggtttaagcaagaggtatttaaatatgtttggcaccctacaaacggagagcctata
aaagaatttgatgacgtgttggactcgttaagatatgccatatacacacatactaaacct
gaacgattaaggagggggaaatgacattgtataagttaatagatgatattgaagcacaag
gaatattgcctaagcatattgaggctctaatagagtcacataaagacgatagagagagaa
tggttaatctctataatagatacaagacacatattgactatgtaccaatattcaaacgtc
gaccaattgaagaaaaagaagattttgaaactggtggaaatgtaaggcgattagacgtgt
ctgttaataacaaacttaacaactcttttgacagcgaaattgttgatacacgtgttggtt
atttacatggtgttcctgttacttatgatttagatgaaaacgcagaaaaaaacgaaaagt
tgaaaaagtttataaccaactttgccattagaaatagtgttgatgatgaggattctgaaa
taggtaaaatggcagcaatttgcggatatggtgctaggttagcatatattgatacgaatg
gtgatgttaggattaagaatatagatccctataatgttatttttgttggcgacaatattt
tagaacctacatactcattgcgctacttttatgaaaaagatgatgataatggcactgatt
atgtgtacgcagagttttacgataatacttattattatgtatttcgaggagaaggtattg
acgctttgcaagaagttggacgatatgaacatttatttgattacaatccattgtttggtg
tacctaacaacaaagagatgataggagatgctgaaaaggttattcacttaattgacgcat
atgatttaacaatgagcgatgcatcaagtgagattagtcagacacgtttagcataccttg
tgttacgcggtatgggtatgagtgaagaaatgattcaagaaacacaaaagagtggcgcat
ttgagttgttcgacaaagatatggacgttaaatacttaacaaaagatgtaaatgacacaa
tgattgagaaccatttagatcgaatcgaaaagaatatcatgcgttttgcaaagtcagtaa
actttaattctgacgagtttaacggaaatgtacctatcattggaatgaaacttaaactta
tggctttagagaacaagtgtatgacgtttgagcgtaagatgacagctatgttgaggtatc
aattcaaagttattttatctgcattaaagcgtaaagggtacaacttggatgatgatagtt
atttaaacctgatatttaagttcactcgtaacattccagttaataagttagaagaatcac
aagtgctaattaacctgaagggacaagtttcagaacgaacaaggttaggacaatcacaac
tagttgatgatgttgattacgaattagacgaaatggaaaaagaaagtcttgaatttaatg
acaaattacctgacatagatgaaggtgacgcaaatgacaaatcccaaaataaccaatcag
aatgatattgatgagtatatcgagggtttaatctctaaagcagaaaaaccaatagaacaa
ctatttgctaatcgacttaaagagataaaacaaatcatcgcagatatgtttgagaaatat
caaaatgatgatgtgtatgttacatggactgaattcaataaatacaacaggctcaataag
gagttaactcgtataggtacaatgttgactgatgactataggcaagtagctaagatgatt
cagaagtcacaagaagatgcttatatagaaaaattccttatgagcctttatttatatgaa
atggcgagtcaaacatctatgcagtttgatgttccgagtaaagaggtaatcaaatcagct
attgaacaacctattgagttcattcgtttaatgccaacactacaaaaacatcgtgatgaa
gtattgaaaaagatacgtatgcacattacacaaggtattatgagtggagagggttactct
aagatagctaaagcaatacgtgatg


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

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  Functional Coupling

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  Attributes

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  Protein Families

No protein families found

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