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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|387910.2.peg.42: Siphoviridae Staphylococcus aureus phage phiNM4

This feature in The SEED Viewer

NCBI Taxonomy Id: 387910

Current Assignment: Phage terminase, large subunit
Translate Function Assignments


Context on contig DQ530362 from base 12820 to 24068 (11249 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
27 12820 13062 243 +           Phage phi 11 orf22 protein homolog protein_id|ABF73252.1, gi|104641944
28 13077 13478 402 + 14         Phage protein protein_id|ABF73253.1, gi|104641945
29 13475 13669 195 + -4         Phage protein protein_id|ABF73254.1, gi|104641946
30 13666 14115 450 + -4         Phage protein protein_id|ABF73255.1, gi|104641947
31 14112 14396 285 + -4         Phage protein protein_id|ABF73256.1, gi|104641948
32 14389 14637 249 + -8         Phage phi 11 orf23 protein homolog protein_id|ABF73257.1, gi|104641949
33 14630 15166 537 + -8     1: 4   Phage dimeric dUTPase (EC 3.6.1.23) protein_id|ABF73258.1, gi|104641950
34 15203 15409 207 + 36         Phage phi 11 orf26a protein homolog protein_id|ABF73259.1, gi|104641951
35 15406 15600 195 + -4         Hypothetical protein, SAV0878 homolog [SA bacteriophages 11, Mu50B] protein_id|ABF73260.1, gi|104641952
36 15597 15800 204 + -4         Hypothetical protein, SAV0879 homolog [SA bacteriophages 11, Mu50B] protein_id|ABF73261.1, gi|104641953
37 15793 16029 237 + -8         Phage protein protein_id|ABF73262.1, gi|104641954
38 16022 16408 387 + -8         Hypothetical protein, SAV0881 homolog [SA bacteriophages 11, Mu50B] protein_id|ABF73263.1, gi|104641955
39 16405 16578 174 + -4         Phage integrase regulator RinB protein_id|ABF73264.1, gene_name|rinB, gi|104641956
40 16579 16980 402 + 0         Phage integrase regulator RinA protein_id|ABF73265.1, gi|104641957
41 17364 17825 462 + 383         Phage terminase, small subunit protein_id|ABF73266.1, gi|104641958
42 17818 19041 1224 + -8     2: 2 1   Phage terminase, large subunit protein_id|ABF73267.1, gi|104641959
43 19038 20462 1425 + -4     2: 2 1   Phage portal (connector) protein protein_id|ABF73268.1, gi|104641960
44 20431 21384 954 + -32     1: 1 isu Phage minor capsid protein protein_id|ABF73269.1, gi|104641961
45 21386 21592 207 + 1         Phage tail, tail length tape-measure protein # fragment protein_id|ABF73270.1, gi|104641962
46 21695 22279 585 + 102         Phage capsid and scaffold protein_id|ABF73271.1, gi|104641963
47 22296 23210 915 + 16     1: 1 isu Phage major capsid protein protein_id|ABF73272.1, gi|104641964
48 23222 23365 144 + 11         hypothetical protein protein_id|ABF73273.1, gi|104641965
49 23371 23721 351 + 5     1: 1 idu(2) Phage capsid and scaffold protein_id|ABF73274.1, gi|104641966
50 23733 24068 336 + 11     1: 3   Phage head-tail protein protein_id|ABF73275.1, gi|104641967

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

Subsystem Curator Role
Phage_head_and_packaging mellabee Phage terminase, large subunit
Phage_packaging_machinery RamyA Phage terminase, large subunit


  Protein Sequence

>fig|387910.2.peg.42 Phage terminase, large subunit
MNKLKSLYTDKQIEILKQTQKQDWFMLINHGAKRTGKTILNNDLFLRELMRVRKIADEEG
IETPQYILAGATLGTIQKNVLIELTNKYGIEFNFDKYNSFMLFGVQVVQTGHSKVSGIGA
IRGMTSFGAYINEASLAHEEVFDEIKSRCSGTGARILVDTNPDHPEHWLLKDYIENTDPK
AGILSHQFKLDDNNFLNDRYKESIKASTPSGMFYERNINGMWVSGDGVVYADFDLNENTI
KADELDDIPIKEYFAGVDWGYEHYGSIVLIGRGIDGNFYFIEEHAHQFKFIDDWVVIAKD
IVSRYGNINFYCDTARPEYITEFRRHRLRAINADKSKLSGVEEVAKLFKQNKLLVLYDNM
DRFKQEVFKYVWHPTNGEPIKEFDDVLDSLRYAIYTHTKPERLRRGK

MD5 = 2ebb43d6a812536df3d6e808a68feb80


  DNA Sequence

>fig|387910.2.peg.42 Phage terminase, large subunit
atgaataaacttaaatctttatatacggacaaacaaattgaaatattgaagcaaacgcaa
aaacaagattggtttatgttaattaatcacggagcaaagcgtacaggtaaaacaatatta
aacaatgacttatttttacgtgagttaatgcgtgtgcgaaagatagcagacgaagaagga
attgagacacctcaatatatacttgctggtgcaacattaggtacgattcaaaaaaacgta
ctaatagagttaactaacaaatatggcattgagtttaattttgataaatataattcattc
atgttatttggcgttcaagtggttcagacaggtcacagtaaagtaagtggtataggagct
atacgtggtatgacatcgtttggtgcatatatcaatgaagcgtcgttagcgcatgaagag
gtgtttgacgagattaagtcacgttgtagtggaactggtgcaagaatattggtagatacc
aaccctgaccatcccgagcattggttgttgaaagattatattgaaaatacagatcctaaa
gcaggtatactgagtcaccaatttaagctcgatgacaataactttcttaatgatagatat
aaagagtctattaaggcttcaacaccatcaggtatgttctatgaacgtaatatcaacggt
atgtgggtgtctggtgacggtgtagtatatgccgactttgatttgaatgagaatacgatt
aaagcagatgaactggacgacatacctatcaaagaatactttgctggtgtcgactggggt
tacgagcactatggatctattgtgttaataggacgaggtatagatggtaacttttatttt
attgaggagcacgcacaccaatttaagtttattgatgattgggtggttattgcaaaagat
attgtaagtagatatggcaatattaatttttactgcgatactgcacgacctgaatacatc
actgaatttagaagacatagattacgtgcaattaacgctgataaaagtaaactatcgggt
gtagaggaagttgctaagttgttcaaacaaaacaagttacttgttctttatgataatatg
gataggtttaagcaagaggtatttaaatatgtttggcaccctacaaacggagagcctata
aaagaatttgatgacgtgttggactcgttaagatatgccatatacacacatactaaacct
gaacgattaaggagggggaaatga


  DNA with Flanking Sequence

>fig|387910.2.peg.42 Phage terminase, large subunit
acagtgaaaacaattgattaaattaacaccgaagcaagaaaagtttgtgctaggactcat
agagggcaagagccaacggaaagcatatattgacgcagggtattcgactaaaggtaagag
tggggaatatctagataaagaagcgagtacactttttaaaaatcggaaggtttccggaag
gtacgaaaaattgcgtcaagaagtagctgaacaatcaaaatggacacgccaaaaggcctt
tgaagaatatgagtggctaaagaatgtagctaagaatgacattgaaatagagggagtgaa
gaaagcgacagctgatgcattcctcgctagtttagatggtatgaatagaatgacgttagg
taacgaagttttagctaacaagaaaatagaaactgaaattaagatgcttgagaagaagat
tgaacaaatagataaaggtgacagtggaacagaagataaaatcaaacaacttcacgacgc
aataacggaagtgatcgtcaatgaataaacttaaatctttatatacggacaaacaaattg
aaatattgaagcaaacgcaaaaacaagattggtttatgttaattaatcacggagcaaagc
gtacaggtaaaacaatattaaacaatgacttatttttacgtgagttaatgcgtgtgcgaa
agatagcagacgaagaaggaattgagacacctcaatatatacttgctggtgcaacattag
gtacgattcaaaaaaacgtactaatagagttaactaacaaatatggcattgagtttaatt
ttgataaatataattcattcatgttatttggcgttcaagtggttcagacaggtcacagta
aagtaagtggtataggagctatacgtggtatgacatcgtttggtgcatatatcaatgaag
cgtcgttagcgcatgaagaggtgtttgacgagattaagtcacgttgtagtggaactggtg
caagaatattggtagataccaaccctgaccatcccgagcattggttgttgaaagattata
ttgaaaatacagatcctaaagcaggtatactgagtcaccaatttaagctcgatgacaata
actttcttaatgatagatataaagagtctattaaggcttcaacaccatcaggtatgttct
atgaacgtaatatcaacggtatgtgggtgtctggtgacggtgtagtatatgccgactttg
atttgaatgagaatacgattaaagcagatgaactggacgacatacctatcaaagaatact
ttgctggtgtcgactggggttacgagcactatggatctattgtgttaataggacgaggta
tagatggtaacttttattttattgaggagcacgcacaccaatttaagtttattgatgatt
gggtggttattgcaaaagatattgtaagtagatatggcaatattaatttttactgcgata
ctgcacgacctgaatacatcactgaatttagaagacatagattacgtgcaattaacgctg
ataaaagtaaactatcgggtgtagaggaagttgctaagttgttcaaacaaaacaagttac
ttgttctttatgataatatggataggtttaagcaagaggtatttaaatatgtttggcacc
ctacaaacggagagcctataaaagaatttgatgacgtgttggactcgttaagatatgcca
tatacacacatactaaacctgaacgattaaggagggggaaatgacattgtataagttaat
agatgatattgaagcacaaggaatattgcctaagcatattgaggctctaatagagtcaca
taaagacgatagagagagaatggttaatctctataatagatacaagacacatattgacta
tgtaccaatattcaaacgtcgaccaattgaagaaaaagaagattttgaaactggtggaaa
tgtaaggcgattagacgtgtctgttaataacaaacttaacaactcttttgacagcgaaat
tgttgatacacgtgttggttatttacatggtgttcctgttacttatgatttagatgaaaa
cgcagaaaaaaacgaaaagttgaaaaagtttataaccaactttgccattagaaatagtgt
tgatgatgaggattctgaaataggtaaaatggcagcaatttgcggatatggtgctaggtt
agcatatattgatacgaatggtgatgttaggattaagaatatagatccctataatgttat
tttt


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No essentially identical proteins found

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  Functional Coupling

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  Attributes

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  Protein Families

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