Protein Page for fig|387910.2.peg.41

SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov

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Protein fig|387910.2.peg.41: Siphoviridae Staphylococcus aureus phage phiNM4

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NCBI Taxonomy Id: 387910

Current Assignment: Phage terminase, small subunit

Translate Function Assignments

Context on contig DQ530362 from base 12201 to 23210 (11010 bp)


Fid	Start	End	Size (nt)		Gap	SS	Ev	Function	Aliases
25	12201	12560	360	+				Phage phi 11 orf21 protein homolog	protein_id\|ABF73250.1, gi\|104641942
26	12560	12814	255	+	-1			Phage protein	protein_id\|ABF73251.1, gi\|104641943
27	12820	13062	243	+	5			Phage phi 11 orf22 protein homolog	protein_id\|ABF73252.1, gi\|104641944
28	13077	13478	402	+	14			Phage protein	protein_id\|ABF73253.1, gi\|104641945
29	13475	13669	195	+	-4			Phage protein	protein_id\|ABF73254.1, gi\|104641946
30	13666	14115	450	+	-4			Phage protein	protein_id\|ABF73255.1, gi\|104641947
31	14112	14396	285	+	-4			Phage protein	protein_id\|ABF73256.1, gi\|104641948
32	14389	14637	249	+	-8			Phage phi 11 orf23 protein homolog	protein_id\|ABF73257.1, gi\|104641949
33	14630	15166	537	+	-8	1: 3		Phage dimeric dUTPase (EC 3.6.1.23)	protein_id\|ABF73258.1, gi\|104641950
34	15203	15409	207	+	36			Phage phi 11 orf26a protein homolog	protein_id\|ABF73259.1, gi\|104641951
35	15406	15600	195	+	-4			Hypothetical protein, SAV0878 homolog [SA bacteriophages 11, Mu50B]	protein_id\|ABF73260.1, gi\|104641952
36	15597	15800	204	+	-4			Hypothetical protein, SAV0879 homolog [SA bacteriophages 11, Mu50B]	protein_id\|ABF73261.1, gi\|104641953
37	15793	16029	237	+	-8			Phage protein	protein_id\|ABF73262.1, gi\|104641954
38	16022	16408	387	+	-8			Hypothetical protein, SAV0881 homolog [SA bacteriophages 11, Mu50B]	protein_id\|ABF73263.1, gi\|104641955
39	16405	16578	174	+	-4			Phage integrase regulator RinB	protein_id\|ABF73264.1, gene_name\|rinB, gi\|104641956
40	16579	16980	402	+	0			Phage integrase regulator RinA	protein_id\|ABF73265.1, gi\|104641957
41	17364	17825	462	+	383			Phage terminase, small subunit	protein_id\|ABF73266.1, gi\|104641958
42	17818	19041	1224	+	-8	2: 2 1		Phage terminase, large subunit	protein_id\|ABF73267.1, gi\|104641959
43	19038	20462	1425	+	-4	2: 2 1		Phage portal (connector) protein	protein_id\|ABF73268.1, gi\|104641960
44	20431	21384	954	+	-32	1: 1	isu	Phage minor capsid protein	protein_id\|ABF73269.1, gi\|104641961
45	21386	21592	207	+	1			Phage tail, tail length tape-measure protein # fragment	protein_id\|ABF73270.1, gi\|104641962
46	21695	22279	585	+	102			Phage capsid and scaffold	protein_id\|ABF73271.1, gi\|104641963
47	22296	23210	915	+	16	1: 1	isu	Phage major capsid protein	protein_id\|ABF73272.1, gi\|104641964

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Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

Protein Sequence

>fig|387910.2.peg.41 Phage terminase, small subunit
MLGLIEGKSQRKAYIDAGYSTKGKSGEYLDKEASTLFKNRKVSGRYEKLRQEVAEQSKWT
RQKAFEEYEWLKNVAKNDIEIEGVKKATADAFLASLDGMNRMTLGNEVLANKKIETEIKM
LEKKIEQIDKGDSGTEDKIKQLHDAITEVIVNE

MD5 = 23d6a30e0db8efe708ade6f171dad748

DNA Sequence

>fig|387910.2.peg.41 Phage terminase, small subunit
gtgctaggactcatagagggcaagagccaacggaaagcatatattgacgcagggtattcg
actaaaggtaagagtggggaatatctagataaagaagcgagtacactttttaaaaatcgg
aaggtttccggaaggtacgaaaaattgcgtcaagaagtagctgaacaatcaaaatggaca
cgccaaaaggcctttgaagaatatgagtggctaaagaatgtagctaagaatgacattgaa
atagagggagtgaagaaagcgacagctgatgcattcctcgctagtttagatggtatgaat
agaatgacgttaggtaacgaagttttagctaacaagaaaatagaaactgaaattaagatg
cttgagaagaagattgaacaaatagataaaggtgacagtggaacagaagataaaatcaaa
caacttcacgacgcaataacggaagtgatcgtcaatgaataa

DNA with Flanking Sequence

>fig|387910.2.peg.41 Phage terminase, small subunit
aagaaaggttataacagggatgcgattatcaagaagatgcctaactctaaattgaacaga
aacaacttcttagcgcgccgtgatgaattagcagaaaagatttatctactacagtgacga
aaatgacaaaaatgacagaaatgacgaaaatgacactatttttaaactgtgaattaattt
tatataattgatttgtaagaattatcttaagacgtggggtaatagccacattagatgttc
tcatcgatgtgattgagaagtgacaaacatgtaaagttgatatgttacgctattaatcac
ttactacctgcctatatggtgggtagtttaattcttgcattttgagtcataactattttc
ctcctttcacatttattgaacgtagctcctgcacaagatgtaggggcatttttgtattta
aataactagagtaattaacataaaggcgtgtgatacagtgaaaacaattgattaaattaa
caccgaagcaagaaaagtttgtgctaggactcatagagggcaagagccaacggaaagcat
atattgacgcagggtattcgactaaaggtaagagtggggaatatctagataaagaagcga
gtacactttttaaaaatcggaaggtttccggaaggtacgaaaaattgcgtcaagaagtag
ctgaacaatcaaaatggacacgccaaaaggcctttgaagaatatgagtggctaaagaatg
tagctaagaatgacattgaaatagagggagtgaagaaagcgacagctgatgcattcctcg
ctagtttagatggtatgaatagaatgacgttaggtaacgaagttttagctaacaagaaaa
tagaaactgaaattaagatgcttgagaagaagattgaacaaatagataaaggtgacagtg
gaacagaagataaaatcaaacaacttcacgacgcaataacggaagtgatcgtcaatgaat
aaacttaaatctttatatacggacaaacaaattgaaatattgaagcaaacgcaaaaacaa
gattggtttatgttaattaatcacggagcaaagcgtacaggtaaaacaatattaaacaat
gacttatttttacgtgagttaatgcgtgtgcgaaagatagcagacgaagaaggaattgag
acacctcaatatatacttgctggtgcaacattaggtacgattcaaaaaaacgtactaata
gagttaactaacaaatatggcattgagtttaattttgataaatataattcattcatgtta
tttggcgttcaagtggttcagacaggtcacagtaaagtaagtggtataggagctatacgt
ggtatgacatcgtttggtgcatatatcaatgaagcgtcgttagcgcatgaagaggtgttt
gacgagattaagtcacgttgtagtggaactggtgcaagaatattggtagataccaaccct
gaccatcccgagcattggttgt

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