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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
 The SEED


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Protein fig|387910.2.peg.37: Siphoviridae Staphylococcus aureus phage phiNM4

This feature in The SEED Viewer

NCBI Taxonomy Id: 387910

Current Assignment: Phage protein
Translate Function Assignments


Context on contig DQ530362 from base 10433 to 21384 (10952 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
20 10433 11212 780 +           Phage DNA helicase loader protein_id|ABF73245.1, gi|104641937
21 11206 11364 159 + -7         Phage protein protein_id|ABF73246.1, gi|104641938
22 11377 11598 222 + 12         Phage phi 11 orf17 protein homolog protein_id|ABF73247.1, gi|104641939
23 11608 12015 408 + 9         Phage-encoded crossover junction endodeoxyribonuclease RusA (EC 3.1.22.4) protein_id|ABF73248.1, gi|104641940
24 12015 12200 186 + -1         Phage phi 11 orf19 protein homolog protein_id|ABF73249.1, gi|104641941
25 12201 12560 360 + 0         Phage phi 11 orf21 protein homolog protein_id|ABF73250.1, gi|104641942
26 12560 12814 255 + -1         Phage protein protein_id|ABF73251.1, gi|104641943
27 12820 13062 243 + 5         Phage phi 11 orf22 protein homolog protein_id|ABF73252.1, gi|104641944
28 13077 13478 402 + 14         Phage protein protein_id|ABF73253.1, gi|104641945
29 13475 13669 195 + -4         Phage protein protein_id|ABF73254.1, gi|104641946
30 13666 14115 450 + -4         Phage protein protein_id|ABF73255.1, gi|104641947
31 14112 14396 285 + -4         Phage protein protein_id|ABF73256.1, gi|104641948
32 14389 14637 249 + -8         Phage phi 11 orf23 protein homolog protein_id|ABF73257.1, gi|104641949
33 14630 15166 537 + -8     1: 3   Phage dimeric dUTPase (EC 3.6.1.23) protein_id|ABF73258.1, gi|104641950
34 15203 15409 207 + 36         Phage phi 11 orf26a protein homolog protein_id|ABF73259.1, gi|104641951
35 15406 15600 195 + -4         Hypothetical protein, SAV0878 homolog [SA bacteriophages 11, Mu50B] protein_id|ABF73260.1, gi|104641952
36 15597 15800 204 + -4         Hypothetical protein, SAV0879 homolog [SA bacteriophages 11, Mu50B] protein_id|ABF73261.1, gi|104641953
37 15793 16029 237 + -8         Phage protein protein_id|ABF73262.1, gi|104641954
38 16022 16408 387 + -8         Hypothetical protein, SAV0881 homolog [SA bacteriophages 11, Mu50B] protein_id|ABF73263.1, gi|104641955
39 16405 16578 174 + -4         Phage integrase regulator RinB protein_id|ABF73264.1, gene_name|rinB, gi|104641956
40 16579 16980 402 + 0         Phage integrase regulator RinA protein_id|ABF73265.1, gi|104641957
41 17364 17825 462 + 383         Phage terminase, small subunit protein_id|ABF73266.1, gi|104641958
42 17818 19041 1224 + -8     2: 2 1   Phage terminase, large subunit protein_id|ABF73267.1, gi|104641959
43 19038 20462 1425 + -4     2: 2 1   Phage portal (connector) protein protein_id|ABF73268.1, gi|104641960
44 20431 21384 954 + -32     1: 1 isu Phage minor capsid protein protein_id|ABF73269.1, gi|104641961

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|387910.2.peg.37 Phage protein
MINIPKMKFPKKYTEIIKKYKNKTPEEKAKIEDDFIKEINDKDSEFYSPMMANMNEHELR
AMLRMMPSLIDTGDGNDD

MD5 = d90ae8774625d79aae1f4bdf3a1d4b3d


  DNA Sequence

>fig|387910.2.peg.37 Phage protein
atgattaacatacctaaaatgaaattcccgaaaaagtacactgaaataatcaaaaaatat
aaaaataaaacacctgaagaaaaagctaagattgaagatgatttcattaaagaaattaat
gataaagacagtgaattttacagtcctatgatggctaatatgaatgaacatgaattaagg
gctatgttaagaatgatgcctagtttaattgatactggagatggcaatgatgattaa


  DNA with Flanking Sequence

>fig|387910.2.peg.37 Phage protein
gtcgttgaggcagagagtaaagaagaagcgaaagagaagtacgaggcacaagttaaaaga
gatgcagttattaaagtgggtcagttgtatgaaaatataagggagtgtgggaaatgacgg
atgttaaaattaaaactatttcaggtggagtttattttgtaaaaacagctgaaccttttg
aaaaatatgttgaaagaatgacgagttttaatggttatatttacgcaagtactataatca
agaaaccaacgtatattaaaacagatacgattgaatcaatcacacttattgaggagcatg
ggaaatgaatcagctgagaattttattacatgacggtagtagtttgatattacatgaaga
tgaattatttaacgaaatagtatttgttttggacaattttagaaatgatgatgactattt
aacgatagaaaaagattatggcagagaacttgtattgaacaaaggttatatagttgggat
caatgttgaggaggcagatgatgattaacatacctaaaatgaaattcccgaaaaagtaca
ctgaaataatcaaaaaatataaaaataaaacacctgaagaaaaagctaagattgaagatg
atttcattaaagaaattaatgataaagacagtgaattttacagtcctatgatggctaata
tgaatgaacatgaattaagggctatgttaagaatgatgcctagtttaattgatactggag
atggcaatgatgattaaaaaacttaaaaatatggattggttcgatatctttattgctgga
atactgcgattattcggcgtaatcgcactgatgcttgttgtcatatcgcctatatacaca
gtggctagttaccaacacaaagaagtacatcaagggacaattacagataaatataacaag
agacaagataaagaagacaagttctatattgtattagacaacaaacaagtcattgaaaat
tctgatttattattcaaaaagaaatttgatagcgcagacatacaagctaggttaaaagta
ggcgataaagtaaaagttaagacgattggatatagaatacactttttaaatttatatccg
atcttatacgaagtaaagaaggtagataaaaaatgattaaacaaatattaagactattat
tcttactagcaatgtatgagctaggtaagtatgtaactgagcaagtatatattatgatga
cggctaatgatgatgtagaggcgccgagtgacttcgc


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
dbj|BAF66557.1 Staphylococcus aureus subsp. aureus str. Newman     conserved hypothetical protein
fig|320842.3.peg.50 Bacteriophage 96 FIG   Phage protein
fig|320848.3.peg.69 Bacteriophage 88 FIG   Phage protein
fig|320849.3.peg.71 Bacteriophage 92 FIG   Phage protein
fig|426430.6.peg.290 Staphylococcus aureus subsp. aureus str. Newman FIG   Phage protein
fig|426430.8.peg.314 Staphylococcus aureus subsp. aureus str. Newman FIG   Phage protein
fig|553568.3.peg.1176 Staphylococcus aureus A6224 FIG   Phage protein
fig|553577.3.peg.2929 Staphylococcus aureus A8796 FIG   Phage protein
fig|553580.3.peg.2707 Staphylococcus aureus A8819 FIG   Phage protein
gb|AAX91472.1 Bacteriophage 96     ORF062
gb|AAX91915.1 Bacteriophage 88     ORF065
gb|AAX91988.1 Bacteriophage 92     ORF068
gb|ABF73262.1 Staphylococcus aureus phage phiNM4     hypothetical protein
gb|EEV80777.1 Staphylococcus aureus A6224     conserved hypothetical protein
gi|104641954 Staphylococcus aureus phage phiNM4 NCBI   hypothetical protein
gi|150373297 Staphylococcus aureus subsp. aureus str. Newman NCBI   conserved hypothetical protein
gi|151220497 Staphylococcus aureus subsp. aureus str. Newman NCBI   hypothetical protein NWMN_0285
gi|257857886 Staphylococcus aureus A6224 NCBI   conserved hypothetical protein
gi|258448849 Staphylococcus aureus A6224 NCBI   conserved hypothetical protein
gi|62636361 Bacteriophage 96 NCBI   ORF062
gi|62636804 Bacteriophage 88 NCBI   ORF065
gi|62636877 Bacteriophage 92 NCBI   ORF068
gi|66395940 Staphylococcus phage 96 NCBI   ORF062
gi|66396389 Staphylococcus phage 88 NCBI   ORF065
gi|66396463 Staphylococcus phage 92 NCBI   ORF068
img|638314721 Bacteriophage 96 IMG   ORF062
img|638315156 Bacteriophage 88 IMG   ORF065
img|638315230 Bacteriophage 92 IMG   ORF068
img|640794645 Staphylococcus aureus aureus Newman IMG   hypothetical protein
kegg|sae:NWMN_0285 Staphylococcus aureus subsp. aureus Newman KEGG   hypothetical protein
ref|YP_001331319.1 Staphylococcus aureus subsp. aureus str. Newman RefSeq   hypothetical protein NWMN_0285
ref|YP_240302.1 Staphylococcus phage 96 RefSeq   ORF062
ref|YP_240737.1 Staphylococcus phage 88 RefSeq   ORF065
ref|YP_240811.1 Staphylococcus phage 92 RefSeq   ORF068
ref|ZP_05696959.1 Staphylococcus aureus A6224 RefSeq   conserved hypothetical protein
tr|A0EX53 Staphylococcus aureus phage phiNM4 TrEMBL   Putative uncharacterized protein
tr|A6QDX5 Staphylococcus aureus (strain Newman) TrEMBL   Putative uncharacterized protein
tr|Q4ZAB5 Staphylococcus phage 92 TrEMBL   ORF068
tr|Q4ZAI9 Staphylococcus phage 88 TrEMBL   ORF065
tr|Q4ZBS4 Staphylococcus phage 96 TrEMBL   ORF062


  Links to Related Entries in Other Sites

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  Functional Coupling

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  Attributes

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  Protein Families

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