The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki] [GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]
|
![]() |
Fid | Start | End | Size (nt) |
Gap | Find best clusters |
Pins | Fc-sc | SS | Ev | Function | Aliases | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
18 | 9588 | 8731 | 858 | - | ![]() |
Phage protein | protein_id|ABF73243.1, gi|104641935 | |||||
19 | 9653 | 10423 | 771 | + | 64 | ![]() |
1: 3 | Phage DNA replication protein O | protein_id|ABF73244.1, gi|104641936 | |||
20 | 10433 | 11212 | 780 | + | 9 | ![]() |
Phage DNA helicase loader | protein_id|ABF73245.1, gi|104641937 | ||||
21 | 11206 | 11364 | 159 | + | -7 | ![]() |
Phage protein | protein_id|ABF73246.1, gi|104641938 | ||||
22 | 11377 | 11598 | 222 | + | 12 | ![]() |
Phage phi 11 orf17 protein homolog | protein_id|ABF73247.1, gi|104641939 | ||||
23 | 11608 | 12015 | 408 | + | 9 | ![]() |
Phage-encoded crossover junction endodeoxyribonuclease RusA (EC 3.1.22.4) | protein_id|ABF73248.1, gi|104641940 | ||||
24 | 12015 | 12200 | 186 | + | -1 | ![]() |
Phage phi 11 orf19 protein homolog | protein_id|ABF73249.1, gi|104641941 | ||||
25 | 12201 | 12560 | 360 | + | 0 | ![]() |
Phage phi 11 orf21 protein homolog | protein_id|ABF73250.1, gi|104641942 | ||||
26 | 12560 | 12814 | 255 | + | -1 | ![]() |
Phage protein | protein_id|ABF73251.1, gi|104641943 | ||||
27 | 12820 | 13062 | 243 | + | 5 | ![]() |
Phage phi 11 orf22 protein homolog | protein_id|ABF73252.1, gi|104641944 | ||||
28 | 13077 | 13478 | 402 | + | 14 | ![]() |
Phage protein | protein_id|ABF73253.1, gi|104641945 | ||||
29 | 13475 | 13669 | 195 | + | -4 | ![]() |
Phage protein | protein_id|ABF73254.1, gi|104641946 | ||||
30 | 13666 | 14115 | 450 | + | -4 | ![]() |
Phage protein | protein_id|ABF73255.1, gi|104641947 | ||||
31 | 14112 | 14396 | 285 | + | -4 | ![]() |
Phage protein | protein_id|ABF73256.1, gi|104641948 | ||||
32 | 14389 | 14637 | 249 | + | -8 | ![]() |
Phage phi 11 orf23 protein homolog | protein_id|ABF73257.1, gi|104641949 | ||||
33 | 14630 | 15166 | 537 | + | -8 | ![]() |
1: 4 | Phage dimeric dUTPase (EC 3.6.1.23) | protein_id|ABF73258.1, gi|104641950 | |||
34 | 15203 | 15409 | 207 | + | 36 | ![]() |
Phage phi 11 orf26a protein homolog | protein_id|ABF73259.1, gi|104641951 | ||||
35 | 15406 | 15600 | 195 | + | -4 | ![]() |
Hypothetical protein, SAV0878 homolog [SA bacteriophages 11, Mu50B] | protein_id|ABF73260.1, gi|104641952 | ||||
36 | 15597 | 15800 | 204 | + | -4 | ![]() |
Hypothetical protein, SAV0879 homolog [SA bacteriophages 11, Mu50B] | protein_id|ABF73261.1, gi|104641953 | ||||
37 | 15793 | 16029 | 237 | + | -8 | ![]() |
Phage protein | protein_id|ABF73262.1, gi|104641954 | ||||
38 | 16022 | 16408 | 387 | + | -8 | ![]() |
Hypothetical protein, SAV0881 homolog [SA bacteriophages 11, Mu50B] | protein_id|ABF73263.1, gi|104641955 | ||||
39 | 16405 | 16578 | 174 | + | -4 | ![]() |
Phage integrase regulator RinB | protein_id|ABF73264.1, gene_name|rinB, gi|104641956 | ||||
40 | 16579 | 16980 | 402 | + | 0 | ![]() |
Phage integrase regulator RinA | protein_id|ABF73265.1, gi|104641957 | ||||
41 | 17364 | 17825 | 462 | + | 383 | ![]() |
Phage terminase, small subunit | protein_id|ABF73266.1, gi|104641958 | ||||
42 | 17818 | 19041 | 1224 | + | -8 | ![]() |
2: 1 2 | Phage terminase, large subunit | protein_id|ABF73267.1, gi|104641959 | |||
43 | 19038 | 20462 | 1425 | + | -4 | ![]() |
2: 1 2 | Phage portal (connector) protein | protein_id|ABF73268.1, gi|104641960 |
Annotation History / View All Related Annotations | Help on Annotations |
Id | Organism | Who | ASSIGN | Assignment |
---|---|---|---|---|
dbj|BAF66555.1 | Staphylococcus aureus subsp. aureus str. Newman | conserved hypothetical protein | ||
dbj|BAF67283.1 | Staphylococcus aureus subsp. aureus str. Newman | conserved hypothetical protein | ||
dbj|BAF68069.1 | Staphylococcus aureus subsp. aureus str. Newman | conserved hypothetical protein | ||
fig|387905.2.peg.29 | Siphoviridae Staphylococcus phage phiNM | FIG | Phage protein | |
fig|387908.2.peg.31 | Siphoviridae Staphylococcus aureus phage phiNM2 | FIG | Phage protein | |
fig|426430.6.peg.1741 | Staphylococcus aureus subsp. aureus str. Newman | FIG | Phage protein | |
fig|426430.6.peg.284 | Staphylococcus aureus subsp. aureus str. Newman | FIG | Phage protein | |
fig|426430.6.peg.983 | Staphylococcus aureus subsp. aureus str. Newman | FIG | Phage protein | |
fig|426430.8.peg.1102 | Staphylococcus aureus subsp. aureus str. Newman | FIG | Phage protein | |
fig|426430.8.peg.1945 | Staphylococcus aureus subsp. aureus str. Newman | FIG | Phage protein | |
fig|426430.8.peg.308 | Staphylococcus aureus subsp. aureus str. Newman | FIG | Phage protein | |
fig|585151.3.peg.1678 | Staphylococcus aureus subsp. aureus C427 | FIG | Phage protein | |
gb|ABF73059.1 | Staphylococcus aureus phage phiNM1 | hypothetical protein | ||
gb|ABF73125.1 | Staphylococcus aureus phage phiNM2 | hypothetical protein | ||
gb|ABF73256.1 | Staphylococcus aureus phage phiNM4 | hypothetical protein | ||
gi|104641645 | Staphylococcus aureus phage phiNM1 | NCBI | hypothetical protein | |
gi|104641747 | Staphylococcus aureus phage phiNM2 | NCBI | hypothetical protein | |
gi|104641948 | Staphylococcus aureus phage phiNM4 | NCBI | hypothetical protein | |
gi|118430753 | Staphylococcus phage phiNM | NCBI | hypothetical protein SAPPV1_gp29 | |
gi|150373295 | Staphylococcus aureus subsp. aureus str. Newman | NCBI | conserved hypothetical protein | |
gi|150374023 | Staphylococcus aureus subsp. aureus str. Newman | NCBI | conserved hypothetical protein | |
gi|150374809 | Staphylococcus aureus subsp. aureus str. Newman | NCBI | conserved hypothetical protein | |
gi|151220495 | Staphylococcus aureus subsp. aureus str. Newman | NCBI | hypothetical protein NWMN_0283 | |
gi|151221223 | Staphylococcus aureus subsp. aureus str. Newman | NCBI | hypothetical protein NWMN_1011 | |
gi|151222009 | Staphylococcus aureus subsp. aureus str. Newman | NCBI | hypothetical protein NWMN_1797 | |
img|640794643 | Staphylococcus aureus aureus Newman | IMG | hypothetical protein | |
img|640795391 | Staphylococcus aureus aureus Newman | IMG | hypothetical protein | |
img|640796214 | Staphylococcus aureus aureus Newman | IMG | hypothetical protein | |
img|641203584 | Staphylococcus aureus phage phiNM provirus | IMG | hypothetical protein | |
kegg|sae:NWMN_0283 | Staphylococcus aureus subsp. aureus Newman | KEGG | hypothetical protein | |
kegg|sae:NWMN_1011 | Staphylococcus aureus subsp. aureus Newman | KEGG | hypothetical protein | |
kegg|sae:NWMN_1797 | Staphylococcus aureus subsp. aureus Newman | KEGG | hypothetical protein | |
ref|YP_001331317.1 | Staphylococcus aureus subsp. aureus str. Newman | RefSeq | hypothetical protein NWMN_0283 | |
ref|YP_001332045.1 | Staphylococcus aureus subsp. aureus str. Newman | RefSeq | hypothetical protein NWMN_1011 | |
ref|YP_001332831.1 | Staphylococcus aureus subsp. aureus str. Newman | RefSeq | hypothetical protein NWMN_1797 | |
ref|YP_873978.1 | Staphylococcus phage phiNM | RefSeq | hypothetical protein SAPPV1_gp29 | |
tr|A0EWK0 | Staphylococcus aureus phage phiNM1 | TrEMBL | Putative uncharacterized protein | |
tr|A0EWR6 | Staphylococcus aureus phage phiNM2 | TrEMBL | Putative uncharacterized protein | |
tr|A0EX47 | Staphylococcus aureus phage phiNM4 | TrEMBL | Putative uncharacterized protein | |
tr|A6QDX3 | Staphylococcus aureus (strain Newman) | TrEMBL | Putative uncharacterized protein |
Score | Peg | Function |
---|
Key Link Explains Key |
Value |
---|
Compare Regions |
| Psi-Blast | TMpred | TMHMM | Gram negative PSORT | Gram negative SignalP | Gram positive PSORT | Gram positive SignalP | LipoP | Radar | PPSearch | Gram negative CELLO | Gram positive CELLO | ProDom | PDB | RNAFold |
> Show tool descriptions