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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
 The SEED


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Protein fig|387910.2.peg.31: Siphoviridae Staphylococcus aureus phage phiNM4

This feature in The SEED Viewer

NCBI Taxonomy Id: 387910

Current Assignment: Phage protein
Translate Function Assignments


Context on contig DQ530362 from base 8731 to 20462 (11732 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
18 9588 8731 858 -           Phage protein protein_id|ABF73243.1, gi|104641935
19 9653 10423 771 + 64     1: 3   Phage DNA replication protein O protein_id|ABF73244.1, gi|104641936
20 10433 11212 780 + 9         Phage DNA helicase loader protein_id|ABF73245.1, gi|104641937
21 11206 11364 159 + -7         Phage protein protein_id|ABF73246.1, gi|104641938
22 11377 11598 222 + 12         Phage phi 11 orf17 protein homolog protein_id|ABF73247.1, gi|104641939
23 11608 12015 408 + 9         Phage-encoded crossover junction endodeoxyribonuclease RusA (EC 3.1.22.4) protein_id|ABF73248.1, gi|104641940
24 12015 12200 186 + -1         Phage phi 11 orf19 protein homolog protein_id|ABF73249.1, gi|104641941
25 12201 12560 360 + 0         Phage phi 11 orf21 protein homolog protein_id|ABF73250.1, gi|104641942
26 12560 12814 255 + -1         Phage protein protein_id|ABF73251.1, gi|104641943
27 12820 13062 243 + 5         Phage phi 11 orf22 protein homolog protein_id|ABF73252.1, gi|104641944
28 13077 13478 402 + 14         Phage protein protein_id|ABF73253.1, gi|104641945
29 13475 13669 195 + -4         Phage protein protein_id|ABF73254.1, gi|104641946
30 13666 14115 450 + -4         Phage protein protein_id|ABF73255.1, gi|104641947
31 14112 14396 285 + -4         Phage protein protein_id|ABF73256.1, gi|104641948
32 14389 14637 249 + -8         Phage phi 11 orf23 protein homolog protein_id|ABF73257.1, gi|104641949
33 14630 15166 537 + -8     1: 4   Phage dimeric dUTPase (EC 3.6.1.23) protein_id|ABF73258.1, gi|104641950
34 15203 15409 207 + 36         Phage phi 11 orf26a protein homolog protein_id|ABF73259.1, gi|104641951
35 15406 15600 195 + -4         Hypothetical protein, SAV0878 homolog [SA bacteriophages 11, Mu50B] protein_id|ABF73260.1, gi|104641952
36 15597 15800 204 + -4         Hypothetical protein, SAV0879 homolog [SA bacteriophages 11, Mu50B] protein_id|ABF73261.1, gi|104641953
37 15793 16029 237 + -8         Phage protein protein_id|ABF73262.1, gi|104641954
38 16022 16408 387 + -8         Hypothetical protein, SAV0881 homolog [SA bacteriophages 11, Mu50B] protein_id|ABF73263.1, gi|104641955
39 16405 16578 174 + -4         Phage integrase regulator RinB protein_id|ABF73264.1, gene_name|rinB, gi|104641956
40 16579 16980 402 + 0         Phage integrase regulator RinA protein_id|ABF73265.1, gi|104641957
41 17364 17825 462 + 383         Phage terminase, small subunit protein_id|ABF73266.1, gi|104641958
42 17818 19041 1224 + -8     2: 1 2   Phage terminase, large subunit protein_id|ABF73267.1, gi|104641959
43 19038 20462 1425 + -4     2: 1 2   Phage portal (connector) protein protein_id|ABF73268.1, gi|104641960

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|387910.2.peg.31 Phage protein
MNYETGVQLGVMDARLKKMRKQRDEYKKQRDELIGDIGKLRERNKELEKKASAWDRYCKS
VEKDLINEFGKDGERVKFGMELNNKTFMEEDTNE

MD5 = f425ddb9f58addbc18e19208014770fe


  DNA Sequence

>fig|387910.2.peg.31 Phage protein
atgaactatgaaacaggggtccaactaggtgtaatggacgctaggttgaagaagatgaga
aaacaacgtgatgagtacaagaagcaacgtgatgagcttattggggatataggtaagtta
agagaacgcaacaaagagctggagaagaaagcaagtgcatgggataggtattgcaagagc
gttgaaaaagatttaataaacgaatttggcaaagatggtgaaagagttaaatttggaatg
gaattaaacaataaaacttttatggaggaagacactaatgaataa


  DNA with Flanking Sequence

>fig|387910.2.peg.31 Phage protein
aaagctcccgttccaaactgcaagcatagaggtcgaaaaagtggaggtagtagtatgatg
ccgaaatatcgagtgtgggacgaatatacaggaagaatacacgatgttgtaggattcgac
ttcattgagactgaagttcactatgaaaactacgcggaagcagaagctttaatacatgca
agagattttaaagatgtagaacttatgcaaagtacaggacttaaagacaaaaacaacaac
gaaatatatgcgggagatatagttgagtttgaagatgaaatattagagatgccagacgat
gaatctgtaataggaacaattaatagagcagtaatatctattgatgttgtaaatggtatt
caattaaaagattttatgtttgagggcgcagtctccgaaaatgattactttgagtatata
gacataaaatccttccttagatatgactgtgaggttaaaggcaacatatttgaatcatca
catttattggaggtaacagaatgaactatgaaacaggggtccaactaggtgtaatggacg
ctaggttgaagaagatgagaaaacaacgtgatgagtacaagaagcaacgtgatgagctta
ttggggatataggtaagttaagagaacgcaacaaagagctggagaagaaagcaagtgcat
gggataggtattgcaagagcgttgaaaaagatttaataaacgaatttggcaaagatggtg
aaagagttaaatttggaatggaattaaacaataaaacttttatggaggaagacactaatg
aataaccgtgaacaaatagaacaatccgttataagtgctagtgcgtataacggcaatgac
acagagggattactaaaagagattgaggacgtatataagaaagcgcaagcgtttgatgaa
atacttgagggaatgacaaatgctattcaacattcagttaaagaaggtattgaacttgat
gaagcagtagggattatgacgggtcaagttgtctataaatatgaggaggcacaggaaaat
gactaacacattaacaattgatcagttacaagagttattacaaatacaaaaggagttcga
cgatagaataccaacgctgaacttacgagatagcaaaatagcatatgtagttgaattctt
tgaatggtttaatacattggaaacgtttaagaactggaagaagaaaccaggtaagccgtt
agacgtacaacttgatgaattagctgacatgttggcgtttggattgagtattgcgaatca
agtaggagtgtcatcagaagagata


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
dbj|BAF66555.1 Staphylococcus aureus subsp. aureus str. Newman     conserved hypothetical protein
dbj|BAF67283.1 Staphylococcus aureus subsp. aureus str. Newman     conserved hypothetical protein
dbj|BAF68069.1 Staphylococcus aureus subsp. aureus str. Newman     conserved hypothetical protein
fig|387905.2.peg.29 Siphoviridae Staphylococcus phage phiNM FIG   Phage protein
fig|387908.2.peg.31 Siphoviridae Staphylococcus aureus phage phiNM2 FIG   Phage protein
fig|426430.6.peg.1741 Staphylococcus aureus subsp. aureus str. Newman FIG   Phage protein
fig|426430.6.peg.284 Staphylococcus aureus subsp. aureus str. Newman FIG   Phage protein
fig|426430.6.peg.983 Staphylococcus aureus subsp. aureus str. Newman FIG   Phage protein
fig|426430.8.peg.1102 Staphylococcus aureus subsp. aureus str. Newman FIG   Phage protein
fig|426430.8.peg.1945 Staphylococcus aureus subsp. aureus str. Newman FIG   Phage protein
fig|426430.8.peg.308 Staphylococcus aureus subsp. aureus str. Newman FIG   Phage protein
fig|585151.3.peg.1678 Staphylococcus aureus subsp. aureus C427 FIG   Phage protein
gb|ABF73059.1 Staphylococcus aureus phage phiNM1     hypothetical protein
gb|ABF73125.1 Staphylococcus aureus phage phiNM2     hypothetical protein
gb|ABF73256.1 Staphylococcus aureus phage phiNM4     hypothetical protein
gi|104641645 Staphylococcus aureus phage phiNM1 NCBI   hypothetical protein
gi|104641747 Staphylococcus aureus phage phiNM2 NCBI   hypothetical protein
gi|104641948 Staphylococcus aureus phage phiNM4 NCBI   hypothetical protein
gi|118430753 Staphylococcus phage phiNM NCBI   hypothetical protein SAPPV1_gp29
gi|150373295 Staphylococcus aureus subsp. aureus str. Newman NCBI   conserved hypothetical protein
gi|150374023 Staphylococcus aureus subsp. aureus str. Newman NCBI   conserved hypothetical protein
gi|150374809 Staphylococcus aureus subsp. aureus str. Newman NCBI   conserved hypothetical protein
gi|151220495 Staphylococcus aureus subsp. aureus str. Newman NCBI   hypothetical protein NWMN_0283
gi|151221223 Staphylococcus aureus subsp. aureus str. Newman NCBI   hypothetical protein NWMN_1011
gi|151222009 Staphylococcus aureus subsp. aureus str. Newman NCBI   hypothetical protein NWMN_1797
img|640794643 Staphylococcus aureus aureus Newman IMG   hypothetical protein
img|640795391 Staphylococcus aureus aureus Newman IMG   hypothetical protein
img|640796214 Staphylococcus aureus aureus Newman IMG   hypothetical protein
img|641203584 Staphylococcus aureus phage phiNM provirus IMG   hypothetical protein
kegg|sae:NWMN_0283 Staphylococcus aureus subsp. aureus Newman KEGG   hypothetical protein
kegg|sae:NWMN_1011 Staphylococcus aureus subsp. aureus Newman KEGG   hypothetical protein
kegg|sae:NWMN_1797 Staphylococcus aureus subsp. aureus Newman KEGG   hypothetical protein
ref|YP_001331317.1 Staphylococcus aureus subsp. aureus str. Newman RefSeq   hypothetical protein NWMN_0283
ref|YP_001332045.1 Staphylococcus aureus subsp. aureus str. Newman RefSeq   hypothetical protein NWMN_1011
ref|YP_001332831.1 Staphylococcus aureus subsp. aureus str. Newman RefSeq   hypothetical protein NWMN_1797
ref|YP_873978.1 Staphylococcus phage phiNM RefSeq   hypothetical protein SAPPV1_gp29
tr|A0EWK0 Staphylococcus aureus phage phiNM1 TrEMBL   Putative uncharacterized protein
tr|A0EWR6 Staphylococcus aureus phage phiNM2 TrEMBL   Putative uncharacterized protein
tr|A0EX47 Staphylococcus aureus phage phiNM4 TrEMBL   Putative uncharacterized protein
tr|A6QDX3 Staphylococcus aureus (strain Newman) TrEMBL   Putative uncharacterized protein


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  Functional Coupling

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  Attributes

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  Protein Families

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