Protein Page for fig|387910.2.peg.30

SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov

FIG search

Protein fig|387910.2.peg.30: Siphoviridae Staphylococcus aureus phage phiNM4

This feature in The SEED Viewer

NCBI Taxonomy Id: 387910

Current Assignment: Phage protein

Translate Function Assignments

Context on contig DQ530362 from base 8731 to 20462 (11732 bp)


Fid	Start	End	Size (nt)		Gap	SS	Function	Aliases
18	9588	8731	858	-			Phage protein	protein_id\|ABF73243.1, gi\|104641935
19	9653	10423	771	+	64	1: 4	Phage DNA replication protein O	protein_id\|ABF73244.1, gi\|104641936
20	10433	11212	780	+	9		Phage DNA helicase loader	protein_id\|ABF73245.1, gi\|104641937
21	11206	11364	159	+	-7		Phage protein	protein_id\|ABF73246.1, gi\|104641938
22	11377	11598	222	+	12		Phage phi 11 orf17 protein homolog	protein_id\|ABF73247.1, gi\|104641939
23	11608	12015	408	+	9		Phage-encoded crossover junction endodeoxyribonuclease RusA (EC 3.1.22.4)	protein_id\|ABF73248.1, gi\|104641940
24	12015	12200	186	+	-1		Phage phi 11 orf19 protein homolog	protein_id\|ABF73249.1, gi\|104641941
25	12201	12560	360	+	0		Phage phi 11 orf21 protein homolog	protein_id\|ABF73250.1, gi\|104641942
26	12560	12814	255	+	-1		Phage protein	protein_id\|ABF73251.1, gi\|104641943
27	12820	13062	243	+	5		Phage phi 11 orf22 protein homolog	protein_id\|ABF73252.1, gi\|104641944
28	13077	13478	402	+	14		Phage protein	protein_id\|ABF73253.1, gi\|104641945
29	13475	13669	195	+	-4		Phage protein	protein_id\|ABF73254.1, gi\|104641946
30	13666	14115	450	+	-4		Phage protein	protein_id\|ABF73255.1, gi\|104641947
31	14112	14396	285	+	-4		Phage protein	protein_id\|ABF73256.1, gi\|104641948
32	14389	14637	249	+	-8		Phage phi 11 orf23 protein homolog	protein_id\|ABF73257.1, gi\|104641949
33	14630	15166	537	+	-8	1: 3	Phage dimeric dUTPase (EC 3.6.1.23)	protein_id\|ABF73258.1, gi\|104641950
34	15203	15409	207	+	36		Phage phi 11 orf26a protein homolog	protein_id\|ABF73259.1, gi\|104641951
35	15406	15600	195	+	-4		Hypothetical protein, SAV0878 homolog [SA bacteriophages 11, Mu50B]	protein_id\|ABF73260.1, gi\|104641952
36	15597	15800	204	+	-4		Hypothetical protein, SAV0879 homolog [SA bacteriophages 11, Mu50B]	protein_id\|ABF73261.1, gi\|104641953
37	15793	16029	237	+	-8		Phage protein	protein_id\|ABF73262.1, gi\|104641954
38	16022	16408	387	+	-8		Hypothetical protein, SAV0881 homolog [SA bacteriophages 11, Mu50B]	protein_id\|ABF73263.1, gi\|104641955
39	16405	16578	174	+	-4		Phage integrase regulator RinB	protein_id\|ABF73264.1, gene_name\|rinB, gi\|104641956
40	16579	16980	402	+	0		Phage integrase regulator RinA	protein_id\|ABF73265.1, gi\|104641957
41	17364	17825	462	+	383		Phage terminase, small subunit	protein_id\|ABF73266.1, gi\|104641958
42	17818	19041	1224	+	-8	2: 1 2	Phage terminase, large subunit	protein_id\|ABF73267.1, gi\|104641959
43	19038	20462	1425	+	-4	2: 1 2	Phage portal (connector) protein	protein_id\|ABF73268.1, gi\|104641960

Annotation History / View All Related Annotations

Help on Annotations

Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

Protein Sequence

>fig|387910.2.peg.30 Phage protein
MMPKYRVWDEYTGRIHDVVGFDFIETEVHYENYAEAEALIHARDFKDVELMQSTGLKDKN
NNEIYAGDIVEFEDEILEMPDDESVIGTINRAVISIDVVNGIQLKDFMFEGAVSENDYFE
YIDIKSFLRYDCEVKGNIFESSHLLEVTE

MD5 = 03e70cd7c7509630e44504efd741f0d3

DNA Sequence

>fig|387910.2.peg.30 Phage protein
atgatgccgaaatatcgagtgtgggacgaatatacaggaagaatacacgatgttgtagga
ttcgacttcattgagactgaagttcactatgaaaactacgcggaagcagaagctttaata
catgcaagagattttaaagatgtagaacttatgcaaagtacaggacttaaagacaaaaac
aacaacgaaatatatgcgggagatatagttgagtttgaagatgaaatattagagatgcca
gacgatgaatctgtaataggaacaattaatagagcagtaatatctattgatgttgtaaat
ggtattcaattaaaagattttatgtttgagggcgcagtctccgaaaatgattactttgag
tatatagacataaaatccttccttagatatgactgtgaggttaaaggcaacatatttgaa
tcatcacatttattggaggtaacagaatga

DNA with Flanking Sequence

>fig|387910.2.peg.30 Phage protein
tttttcaacaggatttagtgatggattcgttcgttttcatccaaatacaaataagtgttc
gacgtcaagttttattccaattgatatccccttcatagttgatattgaaaaagaagtaac
caaagacacggtatttgataagttgtttgaaatgtacgagatggaaggaggagtctatga
aaccgtattatatgcaaacactagtataaaagaatgtttatatggtagacgtttgcctac
caaagcattctatatcttaaacgatgatatgacgatgacgttaatctggaaagatgggga
gttggtagaatgatgcaaacctataaagtaagtctttgtatcaagttcttagcgtctaaa
tgtaattataaattaaaaaagcattattttgtgcaaagtacgaatgaggaagaagccacg
aatacggtattaaaactgactcgtaaaaagctcccgttccaaactgcaagcatagaggtc
gaaaaagtggaggtagtagtatgatgccgaaatatcgagtgtgggacgaatatacaggaa
gaatacacgatgttgtaggattcgacttcattgagactgaagttcactatgaaaactacg
cggaagcagaagctttaatacatgcaagagattttaaagatgtagaacttatgcaaagta
caggacttaaagacaaaaacaacaacgaaatatatgcgggagatatagttgagtttgaag
atgaaatattagagatgccagacgatgaatctgtaataggaacaattaatagagcagtaa
tatctattgatgttgtaaatggtattcaattaaaagattttatgtttgagggcgcagtct
ccgaaaatgattactttgagtatatagacataaaatccttccttagatatgactgtgagg
ttaaaggcaacatatttgaatcatcacatttattggaggtaacagaatgaactatgaaac
aggggtccaactaggtgtaatggacgctaggttgaagaagatgagaaaacaacgtgatga
gtacaagaagcaacgtgatgagcttattggggatataggtaagttaagagaacgcaacaa
agagctggagaagaaagcaagtgcatgggataggtattgcaagagcgttgaaaaagattt
aataaacgaatttggcaaagatggtgaaagagttaaatttggaatggaattaaacaataa
aacttttatggaggaagacactaatgaataaccgtgaacaaatagaacaatccgttataa
gtgctagtgcgtataacggcaatgacacagagggattactaaaagagattgaggacgtat
ataagaaagcgcaagcgtttgatgaaatacttgagggaatgacaaatgctattcaacatt
cagttaaagaaggtattgaacttgatgaagcagtagggattatgacgggtcaagttgtct
ataaatatga

  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
add a new link

  Functional Coupling


Score	Peg	Function

Attributes

Help on Attributes


Key Link Explains Key	Value

Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer

Similarities

Help with SEED similarities options

> Show tool descriptions

FIG search