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SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
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Protein fig|387910.2.peg.29: Siphoviridae Staphylococcus aureus phage phiNM4

This feature in The SEED Viewer

NCBI Taxonomy Id: 387910

Current Assignment: Phage protein
Translate Function Assignments


Context on contig DQ530362 from base 7954 to 19041 (11088 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
17 7954 8625 672 +           Phage phi 11 orf14 protein homolog protein_id|ABF73242.1, gi|104641934
18 9588 8731 858 - 105         Phage protein protein_id|ABF73243.1, gi|104641935
19 9653 10423 771 + 64     1: 1   Phage DNA replication protein O protein_id|ABF73244.1, gi|104641936
20 10433 11212 780 + 9         Phage DNA helicase loader protein_id|ABF73245.1, gi|104641937
21 11206 11364 159 + -7         Phage protein protein_id|ABF73246.1, gi|104641938
22 11377 11598 222 + 12         Phage phi 11 orf17 protein homolog protein_id|ABF73247.1, gi|104641939
23 11608 12015 408 + 9         Phage-encoded crossover junction endodeoxyribonuclease RusA (EC 3.1.22.4) protein_id|ABF73248.1, gi|104641940
24 12015 12200 186 + -1         Phage phi 11 orf19 protein homolog protein_id|ABF73249.1, gi|104641941
25 12201 12560 360 + 0         Phage phi 11 orf21 protein homolog protein_id|ABF73250.1, gi|104641942
26 12560 12814 255 + -1         Phage protein protein_id|ABF73251.1, gi|104641943
27 12820 13062 243 + 5         Phage phi 11 orf22 protein homolog protein_id|ABF73252.1, gi|104641944
28 13077 13478 402 + 14         Phage protein protein_id|ABF73253.1, gi|104641945
29 13475 13669 195 + -4         Phage protein protein_id|ABF73254.1, gi|104641946
30 13666 14115 450 + -4         Phage protein protein_id|ABF73255.1, gi|104641947
31 14112 14396 285 + -4         Phage protein protein_id|ABF73256.1, gi|104641948
32 14389 14637 249 + -8         Phage phi 11 orf23 protein homolog protein_id|ABF73257.1, gi|104641949
33 14630 15166 537 + -8     1: 4   Phage dimeric dUTPase (EC 3.6.1.23) protein_id|ABF73258.1, gi|104641950
34 15203 15409 207 + 36         Phage phi 11 orf26a protein homolog protein_id|ABF73259.1, gi|104641951
35 15406 15600 195 + -4         Hypothetical protein, SAV0878 homolog [SA bacteriophages 11, Mu50B] protein_id|ABF73260.1, gi|104641952
36 15597 15800 204 + -4         Hypothetical protein, SAV0879 homolog [SA bacteriophages 11, Mu50B] protein_id|ABF73261.1, gi|104641953
37 15793 16029 237 + -8         Phage protein protein_id|ABF73262.1, gi|104641954
38 16022 16408 387 + -8         Hypothetical protein, SAV0881 homolog [SA bacteriophages 11, Mu50B] protein_id|ABF73263.1, gi|104641955
39 16405 16578 174 + -4         Phage integrase regulator RinB protein_id|ABF73264.1, gene_name|rinB, gi|104641956
40 16579 16980 402 + 0         Phage integrase regulator RinA protein_id|ABF73265.1, gi|104641957
41 17364 17825 462 + 383         Phage terminase, small subunit protein_id|ABF73266.1, gi|104641958
42 17818 19041 1224 + -8     2: 2 3   Phage terminase, large subunit protein_id|ABF73267.1, gi|104641959

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|387910.2.peg.29 Phage protein
MMQTYKVSLCIKFLASKCNYKLKKHYFVQSTNEEEATNTVLKLTRKKLPFQTASIEVEKV
EVVV

MD5 = 7933b89fa202159205c80d4387ac9d15


  DNA Sequence

>fig|387910.2.peg.29 Phage protein
atgatgcaaacctataaagtaagtctttgtatcaagttcttagcgtctaaatgtaattat
aaattaaaaaagcattattttgtgcaaagtacgaatgaggaagaagccacgaatacggta
ttaaaactgactcgtaaaaagctcccgttccaaactgcaagcatagaggtcgaaaaagtg
gaggtagtagtatga


  DNA with Flanking Sequence

>fig|387910.2.peg.29 Phage protein
gacatttgatacagcggaagagctcggaatatatataaagcaacatggtttggaatacga
ggaacagaagcaactaactttattttagaggagatggaaacaatgaaaatcaaagttaaa
aaagaaatgctattagacgagttaattaaatgggcgcgagaaaatccggagctatcacaa
gggaaaatatttttttcaacaggatttagtgatggattcgttcgttttcatccaaataca
aataagtgttcgacgtcaagttttattccaattgatatccccttcatagttgatattgaa
aaagaagtaaccaaagacacggtatttgataagttgtttgaaatgtacgagatggaagga
ggagtctatgaaaccgtattatatgcaaacactagtataaaagaatgtttatatggtaga
cgtttgcctaccaaagcattctatatcttaaacgatgatatgacgatgacgttaatctgg
aaagatggggagttggtagaatgatgcaaacctataaagtaagtctttgtatcaagttct
tagcgtctaaatgtaattataaattaaaaaagcattattttgtgcaaagtacgaatgagg
aagaagccacgaatacggtattaaaactgactcgtaaaaagctcccgttccaaactgcaa
gcatagaggtcgaaaaagtggaggtagtagtatgatgccgaaatatcgagtgtgggacga
atatacaggaagaatacacgatgttgtaggattcgacttcattgagactgaagttcacta
tgaaaactacgcggaagcagaagctttaatacatgcaagagattttaaagatgtagaact
tatgcaaagtacaggacttaaagacaaaaacaacaacgaaatatatgcgggagatatagt
tgagtttgaagatgaaatattagagatgccagacgatgaatctgtaataggaacaattaa
tagagcagtaatatctattgatgttgtaaatggtattcaattaaaagattttatgtttga
gggcgcagtctccgaaaatgattactttgagtatatagacataaaatccttccttagata
tgactgtgaggttaaaggcaacatatttgaatcatcacatttattggaggtaacagaatg
aactatgaaacaggggtccaactaggtgtaatggacgctaggttgaagaagatga


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
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  Functional Coupling

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  Attributes

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  Protein Families

No protein families found

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