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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|387910.2.peg.27: Siphoviridae Staphylococcus aureus phage phiNM4

This feature in The SEED Viewer

NCBI Taxonomy Id: 387910

Current Assignment: Phage phi 11 orf22 protein homolog
Translate Function Assignments



Context on contig DQ530362 from base 7390 to 19041 (11652 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
16 7390 7941 552 +       1: 1   Phage ssDNA binding protein protein_id|ABF73241.1, gi|104641933
17 7954 8625 672 + 12         Phage phi 11 orf14 protein homolog protein_id|ABF73242.1, gi|104641934
18 9588 8731 858 - 105         Phage protein protein_id|ABF73243.1, gi|104641935
19 9653 10423 771 + 64     1: 1   Phage DNA replication protein O protein_id|ABF73244.1, gi|104641936
20 10433 11212 780 + 9         Phage DNA helicase loader protein_id|ABF73245.1, gi|104641937
21 11206 11364 159 + -7         Phage protein protein_id|ABF73246.1, gi|104641938
22 11377 11598 222 + 12         Phage phi 11 orf17 protein homolog protein_id|ABF73247.1, gi|104641939
23 11608 12015 408 + 9         Phage-encoded crossover junction endodeoxyribonuclease RusA (EC 3.1.22.4) protein_id|ABF73248.1, gi|104641940
24 12015 12200 186 + -1         Phage phi 11 orf19 protein homolog protein_id|ABF73249.1, gi|104641941
25 12201 12560 360 + 0         Phage phi 11 orf21 protein homolog protein_id|ABF73250.1, gi|104641942
26 12560 12814 255 + -1         Phage protein protein_id|ABF73251.1, gi|104641943
27 12820 13062 243 + 5         Phage phi 11 orf22 protein homolog protein_id|ABF73252.1, gi|104641944
28 13077 13478 402 + 14         Phage protein protein_id|ABF73253.1, gi|104641945
29 13475 13669 195 + -4         Phage protein protein_id|ABF73254.1, gi|104641946
30 13666 14115 450 + -4         Phage protein protein_id|ABF73255.1, gi|104641947
31 14112 14396 285 + -4         Phage protein protein_id|ABF73256.1, gi|104641948
32 14389 14637 249 + -8         Phage phi 11 orf23 protein homolog protein_id|ABF73257.1, gi|104641949
33 14630 15166 537 + -8     1: 4   Phage dimeric dUTPase (EC 3.6.1.23) protein_id|ABF73258.1, gi|104641950
34 15203 15409 207 + 36         Phage phi 11 orf26a protein homolog protein_id|ABF73259.1, gi|104641951
35 15406 15600 195 + -4         Hypothetical protein, SAV0878 homolog [SA bacteriophages 11, Mu50B] protein_id|ABF73260.1, gi|104641952
36 15597 15800 204 + -4         Hypothetical protein, SAV0879 homolog [SA bacteriophages 11, Mu50B] protein_id|ABF73261.1, gi|104641953
37 15793 16029 237 + -8         Phage protein protein_id|ABF73262.1, gi|104641954
38 16022 16408 387 + -8         Hypothetical protein, SAV0881 homolog [SA bacteriophages 11, Mu50B] protein_id|ABF73263.1, gi|104641955
39 16405 16578 174 + -4         Phage integrase regulator RinB protein_id|ABF73264.1, gene_name|rinB, gi|104641956
40 16579 16980 402 + 0         Phage integrase regulator RinA protein_id|ABF73265.1, gi|104641957
41 17364 17825 462 + 383         Phage terminase, small subunit protein_id|ABF73266.1, gi|104641958
42 17818 19041 1224 + -8     2: 2 3   Phage terminase, large subunit protein_id|ABF73267.1, gi|104641959

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|387910.2.peg.27 Phage phi 11 orf22 protein homolog
MTDNARKEYLNQFFGSKRYLYQDNERVAHIHVVNGAYYFHGHIVPDWQGVKKTFDTAEEL
GIYIKQHGLEYEEQKQLTLF

MD5 = 468b1f307e192f99e6a37db2d8af1d6d


  DNA Sequence

>fig|387910.2.peg.27 Phage phi 11 orf22 protein homolog
atgacagataacgcgcgtaaagaatacttaaaccaatttttcggctctaagagatatctg
tatcaggataacgagcgagtggcacatatccatgtagtgaatggcgcttattactttcac
gggcatatcgtaccagattggcaaggtgtgaaaaagacatttgatacagcggaagagctc
ggaatatatataaagcaacatggtttggaatacgaggaacagaagcaactaactttattt
tag


  DNA with Flanking Sequence

>fig|387910.2.peg.27 Phage phi 11 orf22 protein homolog
gttgttagaagccttaaacgcaccttatggcatgcgcttagctgagtataaagaaatcgt
attatccagaattatgcaacgagagagcaaagaacgtgaaatagctaggcaacgacgtaa
agaggttgaactacgtaagaggaaaccacatttgtttaatgtaccacaaaaacattcacg
tgatccgtactggttcgatgtcacttataaccaaatgttcaagaaatggagtgaagcata
atgagcataatcagtaacagaaaagtagatatgaatgaaacgcaagacaatgttaagcaa
ccagcacattacacatacggcgatattgaaattatagattttattgaacaagtaacggca
cagtatccaccacaattagcatttgcaataggtaatgcaatcaaatacttgtctagagca
ccgttaaagaatggtcatgaggatatggcaaaagcgaagttttatgtagatagagtgttt
gacttgtgggagtaatgaccatgacagataacgcgcgtaaagaatacttaaaccaatttt
tcggctctaagagatatctgtatcaggataacgagcgagtggcacatatccatgtagtga
atggcgcttattactttcacgggcatatcgtaccagattggcaaggtgtgaaaaagacat
ttgatacagcggaagagctcggaatatatataaagcaacatggtttggaatacgaggaac
agaagcaactaactttattttagaggagatggaaacaatgaaaatcaaagttaaaaaaga
aatgctattagacgagttaattaaatgggcgcgagaaaatccggagctatcacaagggaa
aatatttttttcaacaggatttagtgatggattcgttcgttttcatccaaatacaaataa
gtgttcgacgtcaagttttattccaattgatatccccttcatagttgatattgaaaaaga
agtaaccaaagacacggtatttgataagttgtttgaaatgtacgagatggaaggaggagt
ctatgaaaccgtattatatgcaaacactagtataaaagaatgtttatatggtagacgttt
gcctaccaaagcattctatatcttaaacgatgatatgacgatgacgttaatctggaaaga
tggggagttggtagaatgatgcaaacctataaagtaagtctttgtatcaagttcttagcg
tctaaatgtaattataaattaaaaaagcattattttgtgcaaa


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
dbj|BAF66552.1 Staphylococcus aureus subsp. aureus str. Newman     conserved hypothetical protein
fig|320835.3.peg.7 Bacteriophage 53 FIG   Phage phi 11 orf22 protein homolog
fig|426430.8.peg.1099 Staphylococcus aureus subsp. aureus str. Newman FIG   Phage phi 11 orf22 protein homolog
fig|426430.8.peg.1948 Staphylococcus aureus subsp. aureus str. Newman FIG   Phage phi 11 orf22 protein homolog
fig|426430.8.peg.305 Staphylococcus aureus subsp. aureus str. Newman FIG   Phage phi 11 orf22 protein homolog
fig|59506.3.peg.71 Bacteriophage 85 FIG   Phage phi 11 orf22 protein homolog
gb|AAX90878.1 Bacteriophage 53     ORF060
gb|AAX90961.1 Bacteriophage 85     ORF062
gb|ABF73252.1 Staphylococcus aureus phage phiNM4     hypothetical protein
gi|104641944 Staphylococcus aureus phage phiNM4 NCBI   hypothetical protein
gi|150373292 Staphylococcus aureus subsp. aureus str. Newman NCBI   conserved hypothetical protein
gi|151220492 Staphylococcus aureus subsp. aureus str. Newman NCBI   hypothetical protein NWMN_0280
gi|62635767 Bacteriophage 53 NCBI   ORF060
gi|62635850 Bacteriophage 85 NCBI   ORF062
gi|66394921 Staphylococcus phage 85 NCBI   ORF062
gi|66395417 Staphylococcus phage 53 NCBI   ORF060
img|638314126 Bacteriophage 53 IMG   ORF060
img|638314209 Bacteriophage 85 IMG   ORF062
img|640794640 Staphylococcus aureus aureus Newman IMG   hypothetical protein
kegg|sae:NWMN_0280 Staphylococcus aureus subsp. aureus Newman KEGG   hypothetical protein
ref|YP_001331314.1 Staphylococcus aureus subsp. aureus str. Newman RefSeq   hypothetical protein NWMN_0280
ref|YP_239707.1 Staphylococcus phage 53 RefSeq   ORF060
ref|YP_239790.1 Staphylococcus phage 85 RefSeq   ORF062
tr|A0EX43 Staphylococcus aureus phage phiNM4 TrEMBL   Putative uncharacterized protein
tr|A6QDX0 Staphylococcus aureus (strain Newman) TrEMBL   Putative uncharacterized protein
tr|Q4ZD86 Staphylococcus phage 85 TrEMBL   ORF062
tr|Q4ZDG9 Staphylococcus phage 53 TrEMBL   ORF060


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  Functional Coupling

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  Attributes

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  Protein Families

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