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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
 The SEED


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Protein fig|387910.2.peg.26: Siphoviridae Staphylococcus aureus phage phiNM4

This feature in The SEED Viewer

NCBI Taxonomy Id: 387910

Current Assignment: Phage protein
Translate Function Assignments


Context on contig DQ530362 from base 7390 to 17825 (10436 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
16 7390 7941 552 +       1: 1   Phage ssDNA binding protein protein_id|ABF73241.1, gi|104641933
17 7954 8625 672 + 12         Phage phi 11 orf14 protein homolog protein_id|ABF73242.1, gi|104641934
18 9588 8731 858 - 105         Phage protein protein_id|ABF73243.1, gi|104641935
19 9653 10423 771 + 64     1: 1   Phage DNA replication protein O protein_id|ABF73244.1, gi|104641936
20 10433 11212 780 + 9         Phage DNA helicase loader protein_id|ABF73245.1, gi|104641937
21 11206 11364 159 + -7         Phage protein protein_id|ABF73246.1, gi|104641938
22 11377 11598 222 + 12         Phage phi 11 orf17 protein homolog protein_id|ABF73247.1, gi|104641939
23 11608 12015 408 + 9         Phage-encoded crossover junction endodeoxyribonuclease RusA (EC 3.1.22.4) protein_id|ABF73248.1, gi|104641940
24 12015 12200 186 + -1         Phage phi 11 orf19 protein homolog protein_id|ABF73249.1, gi|104641941
25 12201 12560 360 + 0         Phage phi 11 orf21 protein homolog protein_id|ABF73250.1, gi|104641942
26 12560 12814 255 + -1         Phage protein protein_id|ABF73251.1, gi|104641943
27 12820 13062 243 + 5         Phage phi 11 orf22 protein homolog protein_id|ABF73252.1, gi|104641944
28 13077 13478 402 + 14         Phage protein protein_id|ABF73253.1, gi|104641945
29 13475 13669 195 + -4         Phage protein protein_id|ABF73254.1, gi|104641946
30 13666 14115 450 + -4         Phage protein protein_id|ABF73255.1, gi|104641947
31 14112 14396 285 + -4         Phage protein protein_id|ABF73256.1, gi|104641948
32 14389 14637 249 + -8         Phage phi 11 orf23 protein homolog protein_id|ABF73257.1, gi|104641949
33 14630 15166 537 + -8     1: 2   Phage dimeric dUTPase (EC 3.6.1.23) protein_id|ABF73258.1, gi|104641950
34 15203 15409 207 + 36         Phage phi 11 orf26a protein homolog protein_id|ABF73259.1, gi|104641951
35 15406 15600 195 + -4         Hypothetical protein, SAV0878 homolog [SA bacteriophages 11, Mu50B] protein_id|ABF73260.1, gi|104641952
36 15597 15800 204 + -4         Hypothetical protein, SAV0879 homolog [SA bacteriophages 11, Mu50B] protein_id|ABF73261.1, gi|104641953
37 15793 16029 237 + -8         Phage protein protein_id|ABF73262.1, gi|104641954
38 16022 16408 387 + -8         Hypothetical protein, SAV0881 homolog [SA bacteriophages 11, Mu50B] protein_id|ABF73263.1, gi|104641955
39 16405 16578 174 + -4         Phage integrase regulator RinB protein_id|ABF73264.1, gene_name|rinB, gi|104641956
40 16579 16980 402 + 0         Phage integrase regulator RinA protein_id|ABF73265.1, gi|104641957
41 17364 17825 462 + 383         Phage terminase, small subunit protein_id|ABF73266.1, gi|104641958

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|387910.2.peg.26 Phage protein
MSIISNRKVDMNETQDNVKQPAHYTYGDIEIIDFIEQVTAQYPPQLAFAIGNAIKYLSRA
PLKNGHEDMAKAKFYVDRVFDLWE

MD5 = be80d4ff440d8e2c04247312436a9ebc


  DNA Sequence

>fig|387910.2.peg.26 Phage protein
atgagcataatcagtaacagaaaagtagatatgaatgaaacgcaagacaatgttaagcaa
ccagcacattacacatacggcgatattgaaattatagattttattgaacaagtaacggca
cagtatccaccacaattagcatttgcaataggtaatgcaatcaaatacttgtctagagca
ccgttaaagaatggtcatgaggatatggcaaaagcgaagttttatgtagatagagtgttt
gacttgtgggagtaa


  DNA with Flanking Sequence

>fig|387910.2.peg.26 Phage protein
cctacagaagttgaatatcagtattttgatgatgtggatatcgaaaaagaagcgctggca
gattacttatataacaatccagacgaattactagagtatgacaatttaaaaattagaaat
gtaaatgtagaggtggaataaatgagtgtcgtgaagattaacggtaaaccatataaattt
accgaacatgaaaatgaattgataaaaaagaacgggttaactcctggaatggttgcaaaa
agagtacgtggtggctgggcgttgttagaagccttaaacgcaccttatggcatgcgctta
gctgagtataaagaaatcgtattatccagaattatgcaacgagagagcaaagaacgtgaa
atagctaggcaacgacgtaaagaggttgaactacgtaagaggaaaccacatttgtttaat
gtaccacaaaaacattcacgtgatccgtactggttcgatgtcacttataaccaaatgttc
aagaaatggagtgaagcataatgagcataatcagtaacagaaaagtagatatgaatgaaa
cgcaagacaatgttaagcaaccagcacattacacatacggcgatattgaaattatagatt
ttattgaacaagtaacggcacagtatccaccacaattagcatttgcaataggtaatgcaa
tcaaatacttgtctagagcaccgttaaagaatggtcatgaggatatggcaaaagcgaagt
tttatgtagatagagtgtttgacttgtgggagtaatgaccatgacagataacgcgcgtaa
agaatacttaaaccaatttttcggctctaagagatatctgtatcaggataacgagcgagt
ggcacatatccatgtagtgaatggcgcttattactttcacgggcatatcgtaccagattg
gcaaggtgtgaaaaagacatttgatacagcggaagagctcggaatatatataaagcaaca
tggtttggaatacgaggaacagaagcaactaactttattttagaggagatggaaacaatg
aaaatcaaagttaaaaaagaaatgctattagacgagttaattaaatgggcgcgagaaaat
ccggagctatcacaagggaaaatatttttttcaacaggatttagtgatggattcgttcgt
tttcatccaaatacaaataagtgttcgacgtcaagttttattccaattgatatccccttc
atagttgatattgaaaaagaagtaaccaaagacacggtatttgataagttgtttg


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
dbj|BAF66551.1 Staphylococcus aureus subsp. aureus str. Newman     conserved hypothetical protein
dbj|BAF67279.1 Staphylococcus aureus subsp. aureus str. Newman     conserved hypothetical protein
dbj|BAF68073.1 Staphylococcus aureus subsp. aureus str. Newman     conserved hypothetical protein
fig|320835.3.peg.6 Bacteriophage 53 FIG   Phage protein
fig|320843.3.peg.20 Bacteriophage ROSA FIG   Phage protein
fig|387905.2.peg.24 Siphoviridae Staphylococcus phage phiNM FIG   Phage protein
fig|387908.2.peg.26 Siphoviridae Staphylococcus aureus phage phiNM2 FIG   Phage protein
fig|426430.6.peg.1744 Staphylococcus aureus subsp. aureus str. Newman FIG   Phage protein
fig|426430.6.peg.281 Staphylococcus aureus subsp. aureus str. Newman FIG   Phage protein
fig|426430.6.peg.980 Staphylococcus aureus subsp. aureus str. Newman FIG   Phage protein
fig|426430.8.peg.1098 Staphylococcus aureus subsp. aureus str. Newman FIG   Phage protein
fig|426430.8.peg.1949 Staphylococcus aureus subsp. aureus str. Newman FIG   Phage protein
fig|426430.8.peg.304 Staphylococcus aureus subsp. aureus str. Newman FIG   Phage protein
fig|452948.4.peg.2833 Staphylococcus aureus 930918-3 FIG   Phage protein
fig|59506.3.peg.70 Bacteriophage 85 FIG   Phage protein
gb|AAX90879.1 Bacteriophage 53     ORF061
gb|AAX90962.1 Bacteriophage 85     ORF063
gb|AAX91549.1 Bacteriophage ROSA     ORF062
gb|ABF73054.1 Staphylococcus aureus phage phiNM1     hypothetical protein
gb|ABF73120.1 Staphylococcus aureus phage phiNM2     hypothetical protein
gb|ABF73251.1 Staphylococcus aureus phage phiNM4     hypothetical protein
gi|104641640 Staphylococcus aureus phage phiNM1 NCBI   hypothetical protein
gi|104641742 Staphylococcus aureus phage phiNM2 NCBI   hypothetical protein
gi|104641943 Staphylococcus aureus phage phiNM4 NCBI   hypothetical protein
gi|118430748 Staphylococcus phage phiNM NCBI   hypothetical protein SAPPV1_gp24
gi|150373291 Staphylococcus aureus subsp. aureus str. Newman NCBI   conserved hypothetical protein
gi|150374019 Staphylococcus aureus subsp. aureus str. Newman NCBI   conserved hypothetical protein
gi|150374813 Staphylococcus aureus subsp. aureus str. Newman NCBI   conserved hypothetical protein
gi|151220491 Staphylococcus aureus subsp. aureus str. Newman NCBI   hypothetical protein NWMN_0279
gi|151221219 Staphylococcus aureus subsp. aureus str. Newman NCBI   hypothetical protein NWMN_1007
gi|151222013 Staphylococcus aureus subsp. aureus str. Newman NCBI   hypothetical protein NWMN_1801
gi|62635768 Bacteriophage 53 NCBI   ORF061
gi|62635851 Bacteriophage 85 NCBI   ORF063
gi|62636438 Bacteriophage ROSA NCBI   ORF062
gi|66394922 Staphylococcus phage 85 NCBI   ORF063
gi|66395418 Staphylococcus phage 53 NCBI   ORF061
gi|66396018 Staphylococcus phage ROSA NCBI   ORF062
img|638314125 Bacteriophage 53 IMG   ORF061
img|638314208 Bacteriophage 85 IMG   ORF063
img|638314785 Bacteriophage ROSA IMG   ORF062
img|640794639 Staphylococcus aureus aureus Newman IMG   hypothetical protein
img|640795387 Staphylococcus aureus aureus Newman IMG   hypothetical protein
img|640796218 Staphylococcus aureus aureus Newman IMG   hypothetical protein
img|641203579 Staphylococcus aureus phage phiNM provirus IMG   hypothetical protein
kegg|sae:NWMN_0279 Staphylococcus aureus subsp. aureus Newman KEGG   hypothetical protein
kegg|sae:NWMN_1007 Staphylococcus aureus subsp. aureus Newman KEGG   hypothetical protein
kegg|sae:NWMN_1801 Staphylococcus aureus subsp. aureus Newman KEGG   hypothetical protein
ref|YP_001331313.1 Staphylococcus aureus subsp. aureus str. Newman RefSeq   hypothetical protein NWMN_0279
ref|YP_001332041.1 Staphylococcus aureus subsp. aureus str. Newman RefSeq   hypothetical protein NWMN_1007
ref|YP_001332835.1 Staphylococcus aureus subsp. aureus str. Newman RefSeq   hypothetical protein NWMN_1801
ref|YP_239706.1 Staphylococcus phage 53 RefSeq   ORF061
ref|YP_239789.1 Staphylococcus phage 85 RefSeq   ORF063
ref|YP_240366.1 Staphylococcus phage ROSA RefSeq   ORF062
ref|YP_873973.1 Staphylococcus phage phiNM RefSeq   hypothetical protein SAPPV1_gp24
tr|A0EWJ5 Staphylococcus aureus phage phiNM1 TrEMBL   Putative uncharacterized protein
tr|A0EWR1 Staphylococcus aureus phage phiNM2 TrEMBL   Putative uncharacterized protein
tr|A0EX42 Staphylococcus aureus phage phiNM4 TrEMBL   Putative uncharacterized protein
tr|A6QDW9 Staphylococcus aureus (strain Newman) TrEMBL   Putative uncharacterized protein
tr|Q4ZBL0 Staphylococcus phage ROSA TrEMBL   ORF062
tr|Q4ZD87 Staphylococcus phage 85 TrEMBL   ORF063
tr|Q4ZDH0 Staphylococcus phage 53 TrEMBL   ORF061


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  Attributes

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  Protein Families

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