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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
The SEED


FIG search

Protein fig|387910.2.peg.24: Siphoviridae Staphylococcus aureus phage phiNM4

This feature in The SEED Viewer

NCBI Taxonomy Id: 387910

Current Assignment: Phage phi 11 orf19 protein homolog
Translate Function Assignments



Context on contig DQ530362 from base 6573 to 16980 (10408 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
15 6573 7361 789 +           Phage phi 11 orf12 protein homolog protein_id|ABF73240.1, gi|104641932
16 7390 7941 552 + 28     1: 1   Phage ssDNA binding protein protein_id|ABF73241.1, gi|104641933
17 7954 8625 672 + 12         Phage phi 11 orf14 protein homolog protein_id|ABF73242.1, gi|104641934
18 9588 8731 858 - 105         Phage protein protein_id|ABF73243.1, gi|104641935
19 9653 10423 771 + 64     1: 1   Phage DNA replication protein O protein_id|ABF73244.1, gi|104641936
20 10433 11212 780 + 9         Phage DNA helicase loader protein_id|ABF73245.1, gi|104641937
21 11206 11364 159 + -7         Phage protein protein_id|ABF73246.1, gi|104641938
22 11377 11598 222 + 12         Phage phi 11 orf17 protein homolog protein_id|ABF73247.1, gi|104641939
23 11608 12015 408 + 9         Phage-encoded crossover junction endodeoxyribonuclease RusA (EC 3.1.22.4) protein_id|ABF73248.1, gi|104641940
24 12015 12200 186 + -1         Phage phi 11 orf19 protein homolog protein_id|ABF73249.1, gi|104641941
25 12201 12560 360 + 0         Phage phi 11 orf21 protein homolog protein_id|ABF73250.1, gi|104641942
26 12560 12814 255 + -1         Phage protein protein_id|ABF73251.1, gi|104641943
27 12820 13062 243 + 5         Phage phi 11 orf22 protein homolog protein_id|ABF73252.1, gi|104641944
28 13077 13478 402 + 14         Phage protein protein_id|ABF73253.1, gi|104641945
29 13475 13669 195 + -4         Phage protein protein_id|ABF73254.1, gi|104641946
30 13666 14115 450 + -4         Phage protein protein_id|ABF73255.1, gi|104641947
31 14112 14396 285 + -4         Phage protein protein_id|ABF73256.1, gi|104641948
32 14389 14637 249 + -8         Phage phi 11 orf23 protein homolog protein_id|ABF73257.1, gi|104641949
33 14630 15166 537 + -8     1: 2   Phage dimeric dUTPase (EC 3.6.1.23) protein_id|ABF73258.1, gi|104641950
34 15203 15409 207 + 36         Phage phi 11 orf26a protein homolog protein_id|ABF73259.1, gi|104641951
35 15406 15600 195 + -4         Hypothetical protein, SAV0878 homolog [SA bacteriophages 11, Mu50B] protein_id|ABF73260.1, gi|104641952
36 15597 15800 204 + -4         Hypothetical protein, SAV0879 homolog [SA bacteriophages 11, Mu50B] protein_id|ABF73261.1, gi|104641953
37 15793 16029 237 + -8         Phage protein protein_id|ABF73262.1, gi|104641954
38 16022 16408 387 + -8         Hypothetical protein, SAV0881 homolog [SA bacteriophages 11, Mu50B] protein_id|ABF73263.1, gi|104641955
39 16405 16578 174 + -4         Phage integrase regulator RinB protein_id|ABF73264.1, gene_name|rinB, gi|104641956
40 16579 16980 402 + 0         Phage integrase regulator RinA protein_id|ABF73265.1, gi|104641957

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|387910.2.peg.24 Phage phi 11 orf19 protein homolog
MQQQAYINATIDIRIPTEVEYQYFDDVDIEKEALADYLYNNPDELLEYDNLKIRNVNVEV
E

MD5 = e21869f624553a89a5899d89dc699d6e


  DNA Sequence

>fig|387910.2.peg.24 Phage phi 11 orf19 protein homolog
atgcaacagcaagcatatataaacgcaacgattgatataaggatacctacagaagttgaa
tatcagtattttgatgatgtggatatcgaaaaagaagcgctggcagattacttatataac
aatccagacgaattactagagtatgacaatttaaaaattagaaatgtaaatgtagaggtg
gaataa


  DNA with Flanking Sequence

>fig|387910.2.peg.24 Phage phi 11 orf19 protein homolog
agtgacctaaaacgattcaaaggcgctcacgggcttttatatgagcaagagctagggtta
caagcaacgatatttgatatttagaggtggcacatggaaatagaaattaaatttaacgaa
acgttcgaggcacctatgggctcgcctcgtccacgctttcgtaatacaggtagatttgtt
caaacatacatgccaacagcttatacaaatcataaagcgtatatacaagggcaaatgcct
aagttaaatctagagcgcgcactaaaaatcgaattagacttttactttccattacttaaa
tcatggtcgaagaaaaagaaaagtgaaatggttggacagtataaagtgactaagccggat
atcgataacttaattaaaacagtattagacgcatgtaatggtcatgtgtggaaagacgat
aaccaaattacagaaataactagctcaaagcgttatggactagaaccaaaaataatcatg
cgagttgaggaagtgatctaatgcaacagcaagcatatataaacgcaacgattgatataa
ggatacctacagaagttgaatatcagtattttgatgatgtggatatcgaaaaagaagcgc
tggcagattacttatataacaatccagacgaattactagagtatgacaatttaaaaatta
gaaatgtaaatgtagaggtggaataaatgagtgtcgtgaagattaacggtaaaccatata
aatttaccgaacatgaaaatgaattgataaaaaagaacgggttaactcctggaatggttg
caaaaagagtacgtggtggctgggcgttgttagaagccttaaacgcaccttatggcatgc
gcttagctgagtataaagaaatcgtattatccagaattatgcaacgagagagcaaagaac
gtgaaatagctaggcaacgacgtaaagaggttgaactacgtaagaggaaaccacatttgt
ttaatgtaccacaaaaacattcacgtgatccgtactggttcgatgtcacttataaccaaa
tgttcaagaaatggagtgaagcataatgagcataatcagtaacagaaaagtagatatgaa
tgaaacgcaagacaatgttaagcaaccagcacattacacatacggcgatattgaaattat
agattttattgaacaagtaacggcacagtatccaccacaattagca


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
fig|320835.3.peg.4 Bacteriophage 53 FIG   Phage phi 11 orf19 protein homolog
fig|320843.3.peg.18 Bacteriophage ROSA FIG   Phage phi 11 orf19 protein homolog
fig|387905.2.peg.22 Siphoviridae Staphylococcus phage phiNM FIG   Phage phi 11 orf19 protein homolog
fig|387908.2.peg.24 Siphoviridae Staphylococcus aureus phage phiNM2 FIG   Phage phi 11 orf19 protein homolog
fig|426430.6.peg.1746 Staphylococcus aureus subsp. aureus str. Newman FIG   Phage phi 11 orf19 protein homolog
fig|426430.6.peg.279 Staphylococcus aureus subsp. aureus str. Newman FIG   Phage phi 11 orf19 protein homolog
fig|426430.6.peg.978 Staphylococcus aureus subsp. aureus str. Newman FIG   Phage phi 11 orf19 protein homolog
fig|426430.8.peg.1096 Staphylococcus aureus subsp. aureus str. Newman FIG   Phage phi 11 orf19 protein homolog
fig|426430.8.peg.1951 Staphylococcus aureus subsp. aureus str. Newman FIG   Phage phi 11 orf19 protein homolog
fig|426430.8.peg.302 Staphylococcus aureus subsp. aureus str. Newman FIG   Phage phi 11 orf19 protein homolog
fig|53369.2.peg.25 Siphoviridae Staphylococcus phage 80alpha FIG   Phage phi 11 orf19 protein homolog
fig|59506.3.peg.68 Bacteriophage 85 FIG   Phage phi 11 orf19 protein homolog
gb|AAX90892.1 Bacteriophage 53     ORF086
gb|AAX90974.1 Bacteriophage 85     ORF085
gb|AAX91557.1 Bacteriophage ROSA     ORF095
gb|ABF71596.1 Staphylococcus phage 80alpha     hypothetical protein
gb|ABF73052.1 Staphylococcus aureus phage phiNM1     hypothetical protein
gb|ABF73118.1 Staphylococcus aureus phage phiNM2     hypothetical protein
gb|ABF73249.1 Staphylococcus aureus phage phiNM4     hypothetical protein
gi|103058653 Staphylococcus phage 80alpha NCBI   hypothetical protein
gi|104641638 Staphylococcus aureus phage phiNM1 NCBI   hypothetical protein
gi|104641740 Staphylococcus aureus phage phiNM2 NCBI   hypothetical protein
gi|104641941 Staphylococcus aureus phage phiNM4 NCBI   hypothetical protein
gi|118430746 Staphylococcus phage phiNM NCBI   hypothetical protein SAPPV1_gp22
gi|148717867 Staphylococcus phage 80alpha NCBI   hypothetical protein SPV-80A_gp25
gi|62635781 Bacteriophage 53 NCBI   ORF086
gi|62635863 Bacteriophage 85 NCBI   ORF085
gi|62636446 Bacteriophage ROSA NCBI   ORF095
gi|66394934 Staphylococcus phage 85 NCBI   ORF085
gi|66395431 Staphylococcus phage 53 NCBI   ORF086
gi|66396026 Staphylococcus phage ROSA NCBI   ORF095
img|638314123 Bacteriophage 53 IMG   ORF086
img|638314206 Bacteriophage 85 IMG   ORF085
img|638314783 Bacteriophage ROSA IMG   ORF095
img|641203577 Staphylococcus aureus phage phiNM provirus IMG   hypothetical protein
img|641208688 Staphylococcus phage 80alpha IMG   hypothetical protein
ref|YP_001285339.1 Staphylococcus phage 80alpha RefSeq   hypothetical protein SPV-80A_gp25
ref|YP_239704.1 Staphylococcus phage 53 RefSeq   ORF086
ref|YP_239787.1 Staphylococcus phage 85 RefSeq   ORF085
ref|YP_240364.1 Staphylococcus phage ROSA RefSeq   ORF095
ref|YP_873971.1 Staphylococcus phage phiNM RefSeq   hypothetical protein SAPPV1_gp22
tr|A0EWJ3 Staphylococcus aureus phage phiNM1 TrEMBL   Putative uncharacterized protein
tr|A0EWQ9 Staphylococcus aureus phage phiNM2 TrEMBL   Putative uncharacterized protein
tr|A0EX40 Staphylococcus aureus phage phiNM4 TrEMBL   Putative uncharacterized protein
tr|A4ZF91 Staphylococcus phage 80alpha TrEMBL   Putative uncharacterized protein
tr|Q4ZBL2 Staphylococcus phage ROSA TrEMBL   ORF095
tr|Q4ZD89 Staphylococcus phage 85 TrEMBL   ORF085
tr|Q4ZDH2 Staphylococcus phage 53 TrEMBL   ORF086


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  Functional Coupling

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  Attributes

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  Protein Families

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