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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
The SEED


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Protein fig|387910.2.peg.17: Siphoviridae Staphylococcus aureus phage phiNM4

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NCBI Taxonomy Id: 387910

Current Assignment: Phage phi 11 orf14 protein homolog
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Context on contig DQ530362 from base 2533 to 13669 (11137 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
4 2997 2533 465 -           Phage protein protein_id|ABF73229.1, gi|104641921
5 3324 3010 315 - 12         Phage repressor protein cI protein_id|ABF73230.1, gi|104641922
6 3476 3712 237 + 151         Phage transcriptional regulator cro protein_id|ABF73231.1, gi|104641923
7 3726 3905 180 + 13         Phage protein protein_id|ABF73232.1, gi|104641924
8 4488 4006 483 - 100         ORF029 protein_id|ABF73233.1, gi|104641925
9 4548 5297 750 + 59         Phage antirepressor protein protein_id|ABF73234.1, gi|104641926
10 5313 5531 219 + 15         Phage phi 11 orf9 protein homolog protein_id|ABF73235.1, gi|104641927
11 5561 5824 264 + 29         Phage protein protein_id|ABF73236.1, gi|104641928
12 5836 5997 162 + 11         Phage phi 11 orf10a protein homolog protein_id|ABF73237.1, gi|104641929
13 6089 6349 261 + 91         Phage phi 11 orf11 protein homolog protein_id|ABF73238.1, gi|104641930
14 6359 6580 222 + 9         Phage phi-ETA orf16 protein homolog protein_id|ABF73239.1, gi|104641931
15 6573 7361 789 + -8         Phage phi 11 orf12 protein homolog protein_id|ABF73240.1, gi|104641932
16 7390 7941 552 + 28     1: 1   Phage ssDNA binding protein protein_id|ABF73241.1, gi|104641933
17 7954 8625 672 + 12         Phage phi 11 orf14 protein homolog protein_id|ABF73242.1, gi|104641934
18 9588 8731 858 - 105         Phage protein protein_id|ABF73243.1, gi|104641935
19 9653 10423 771 + 64     1: 1   Phage DNA replication protein O protein_id|ABF73244.1, gi|104641936
20 10433 11212 780 + 9         Phage DNA helicase loader protein_id|ABF73245.1, gi|104641937
21 11206 11364 159 + -7         Phage protein protein_id|ABF73246.1, gi|104641938
22 11377 11598 222 + 12         Phage phi 11 orf17 protein homolog protein_id|ABF73247.1, gi|104641939
23 11608 12015 408 + 9         Phage-encoded crossover junction endodeoxyribonuclease RusA (EC 3.1.22.4) protein_id|ABF73248.1, gi|104641940
24 12015 12200 186 + -1         Phage phi 11 orf19 protein homolog protein_id|ABF73249.1, gi|104641941
25 12201 12560 360 + 0         Phage phi 11 orf21 protein homolog protein_id|ABF73250.1, gi|104641942
26 12560 12814 255 + -1         Phage protein protein_id|ABF73251.1, gi|104641943
27 12820 13062 243 + 5         Phage phi 11 orf22 protein homolog protein_id|ABF73252.1, gi|104641944
28 13077 13478 402 + 14         Phage protein protein_id|ABF73253.1, gi|104641945
29 13475 13669 195 + -4         Phage protein protein_id|ABF73254.1, gi|104641946

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|387910.2.peg.17 Phage phi 11 orf14 protein homolog
MQYITRYQKDNDGTYSVVATGVELEQSHIDLLENGYPLKAEVEVPDNKKLSIEQRKKIFA
MCRDIELHWGEPVESTRKLLQTELEIMKGYEEISLRDCSMKVARELIELIIAFMFHHQIP
MSVETSKLLSEDKALLYWATINRNCVICGKPHADLAHYEAVGRGMNRNKMNHYDKHVLAL
CREHHNEQHAIGVKSFDDKYHLHDSWIKVDERLNKMLKGEKKE

MD5 = d8103c2201b023f3f993bf5c4c1a3277


  DNA Sequence

>fig|387910.2.peg.17 Phage phi 11 orf14 protein homolog
atgcaatacattacaagataccagaaagataacgacggtacttattccgtcgttgctact
ggtgttgaacttgaacaaagtcacattgacttactagaaaacggatatccactaaaagca
gaagtagaggttccggacaataaaaaactatctatagaacaacgcaaaaaaatattcgca
atgtgtagagatatagaacttcactggggcgaaccagtagaatcaactagaaaattatta
caaacagaattggaaattatgaaaggttatgaagaaatcagtctgcgcgactgttctatg
aaagttgcaagggagttaatagaactgattatagcgtttatgtttcatcatcaaatacct
atgagtgtagaaacgagtaagttgttaagcgaagataaagcgttattatattgggctaca
atcaaccgcaactgtgtaatatgcggaaagcctcacgcagacctggcacattatgaagca
gtcggcagaggcatgaacagaaacaaaatgaaccactatgacaaacatgtattagcgtta
tgtcgcgaacatcacaacgagcaacatgcgattggcgttaagtcgtttgatgataaatac
cacttgcatgactcgtggataaaagttgatgagaggctcaataaaatgttgaaaggagag
aaaaaggaatga


  DNA with Flanking Sequence

>fig|387910.2.peg.17 Phage phi 11 orf14 protein homolog
cagcagggtttcaagctggagaattcacagtgaaagttaaaaatattgaattcaatgata
gagaaaatagatatttcacaatcgtatttgaaaatgatgaaggcaaacaatataaacata
atcaatttgtaccgccgtataaatatgatttccaagaaaaacaattgattgaattagtta
ctcgattaggtattaagttaaatcttcctagcttagattttgataccaatgatcttattg
gtaagttttgtcacttggtattgaaatggaaattcaatgaagatgaaggtaagtatttta
cggatttttcatttattaaaccttacaaaaagggcgatgatgttgttaacaaacctattc
cgaagacagataagcaaaaagctgaagaaaataacggggcacaacaacaaacatcaatgt
ctcaacaaagcaatccatttgaaagcagtggccaatttggatatgacgaccaagatttag
cgttttaaggtgtggtttaaatgcaatacattacaagataccagaaagataacgacggta
cttattccgtcgttgctactggtgttgaacttgaacaaagtcacattgacttactagaaa
acggatatccactaaaagcagaagtagaggttccggacaataaaaaactatctatagaac
aacgcaaaaaaatattcgcaatgtgtagagatatagaacttcactggggcgaaccagtag
aatcaactagaaaattattacaaacagaattggaaattatgaaaggttatgaagaaatca
gtctgcgcgactgttctatgaaagttgcaagggagttaatagaactgattatagcgttta
tgtttcatcatcaaatacctatgagtgtagaaacgagtaagttgttaagcgaagataaag
cgttattatattgggctacaatcaaccgcaactgtgtaatatgcggaaagcctcacgcag
acctggcacattatgaagcagtcggcagaggcatgaacagaaacaaaatgaaccactatg
acaaacatgtattagcgttatgtcgcgaacatcacaacgagcaacatgcgattggcgtta
agtcgtttgatgataaataccacttgcatgactcgtggataaaagttgatgagaggctca
ataaaatgttgaaaggagagaaaaaggaatgaatagactaagaataataaaaatagcact
cctaatcgtcatcttggcggaagagattagaaatgctatgcatgctgtaaaagtggagaa
aattttaaaatctccgtttagttaatacaggtttttacaaaagctttaccataggcggac
aaactaattgagccttttttgatgtctattacccaggggctgtaatgtaactttaatact
tcaaattcaatgccagaaagtttacttattgtttctaggttgtgtcctgactttaacatt
cttttaacaaattctaatcccgaaacaaatctttgtttttctataatcttattaaagtga
tttaaaaactgaggagcataaaacttattataaattcctttttttgttaagtaagacatg
tcaaaagtttcatttaaaacccctaaccttactaggttattaattgaaatttcggttgat
tctatatctaacggagagtcttttattaacgtgtccgatatattcataccgt


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
dbj|BAF41169.1 Staphylococcus phage phiPVL108     hypothetical protein
dbj|BAF66545.1 Staphylococcus aureus subsp. aureus str. Newman     conserved hypothetical protein
dbj|BAF67273.1 Staphylococcus aureus subsp. aureus str. Newman     conserved hypothetical protein
dbj|BAF68079.1 Staphylococcus aureus subsp. aureus str. Newman     conserved hypothetical protein
fig|259901.1.peg.40 Bacteriophage 77 FIG   Phage phi 11 orf14 protein homolog
fig|360398.2.peg.20 Staphylococcus phage FIG   Phage phi 11 orf14 protein homolog
fig|387905.2.peg.16 Siphoviridae Staphylococcus phage phiNM FIG   Phage phi 11 orf14 protein homolog
fig|387908.2.peg.16 Siphoviridae Staphylococcus aureus phage phiNM2 FIG   Phage phi 11 orf14 protein homolog
fig|405947.2.peg.15 Siphoviridae Staphylococcus phage 80 FIG   Phage phi 11 orf14 protein homolog
fig|426430.6.peg.1751 Staphylococcus aureus subsp. aureus str. Newman FIG   Phage phi 11 orf14 protein homolog
fig|426430.6.peg.274 Staphylococcus aureus subsp. aureus str. Newman FIG   Phage phi 11 orf14 protein homolog
fig|426430.6.peg.973 Staphylococcus aureus subsp. aureus str. Newman FIG   Phage phi 11 orf14 protein homolog
fig|426430.8.peg.1090 Staphylococcus aureus subsp. aureus str. Newman FIG   Phage phi 11 orf14 protein homolog
fig|426430.8.peg.1957 Staphylococcus aureus subsp. aureus str. Newman FIG   Phage phi 11 orf14 protein homolog
fig|426430.8.peg.296 Staphylococcus aureus subsp. aureus str. Newman FIG   Phage phi 11 orf14 protein homolog
fig|445517.2.peg.17 Viruses Staphylococcus phage tp310-3 Viruses. FIG   Phage phi 11 orf14 protein homolog
fig|585149.6.peg.1640 Staphylococcus aureus subsp. aureus C101 FIG   Phage phi 11 orf14 protein homolog
fig|585156.3.peg.1020 Staphylococcus aureus subsp. aureus M1015 FIG   Phage phi 11 orf14 protein homolog
fig|585159.3.peg.2058 Staphylococcus aureus subsp. aureus M899 FIG   Phage phi 11 orf14 protein homolog
fig|648017.2.peg.20 Viruses Staphylococcus phage phiPVL-CN125 Viruses. FIG   Phage phi 11 orf14 protein homolog
gb|AAR87890.1 Bacteriophage 77     77ORF018
gb|ABF73046.1 Staphylococcus aureus phage phiNM1     hypothetical protein
gb|ABF73110.1 Staphylococcus aureus phage phiNM2     hypothetical protein
gb|ABF73242.1 Staphylococcus aureus phage phiNM4     hypothetical protein
gb|ABJ88863.1 Staphylococcus phage 80     conserved protein
gb|ABS87546.1 Staphylococcus phage tp310-3     hypothetical protein
gb|ACR54206.1 Staphylococcus phage phiPVL-CN125     hypothetical protein CUR017
gi|104641632 Staphylococcus aureus phage phiNM1 NCBI   hypothetical protein
gi|104641732 Staphylococcus aureus phage phiNM2 NCBI   hypothetical protein
gi|104641934 Staphylococcus aureus phage phiNM4 NCBI   hypothetical protein
gi|116235528 Staphylococcus phage 80 NCBI   conserved protein
gi|118430740 Staphylococcus phage phiNM NCBI   hypothetical protein SAPPV1_gp16
gi|119225798 Staphylococcus phage phiPVL108 NCBI   hypothetical protein
gi|119443672 Staphylococcus phage phiPVL108 NCBI   hypothetical protein SABPV108_gp20
gi|150373285 Staphylococcus aureus subsp. aureus str. Newman NCBI   conserved hypothetical protein
gi|150374013 Staphylococcus aureus subsp. aureus str. Newman NCBI   conserved hypothetical protein
gi|150374819 Staphylococcus aureus subsp. aureus str. Newman NCBI   conserved hypothetical protein
gi|151220485 Staphylococcus aureus subsp. aureus str. Newman NCBI   hypothetical protein NWMN_0273
gi|151221213 Staphylococcus aureus subsp. aureus str. Newman NCBI   hypothetical protein NWMN_1001
gi|151222019 Staphylococcus aureus subsp. aureus str. Newman NCBI   hypothetical protein NWMN_1807
gi|154818120 Staphylococcus phage tp310-3 NCBI   hypothetical protein
gi|156604034 Staphylococcus phage tp310-3 NCBI   hypothetical protein SPTP3103_gp17
gi|238684003 Staphylococcus phage phiPVL-CN125 NCBI   hypothetical protein CUR017
gi|239507378 Staphylococcus phage phiPVL-CN125 NCBI   hypothetical protein CUR017
gi|40557234 Bacteriophage 77 NCBI   77ORF018
gi|41189533 Staphylococcus phage 77 NCBI   77ORF018
img|638305518 Bacteriophage 77 IMG   77ORF018
img|640794633 Staphylococcus aureus aureus Newman IMG   hypothetical protein
img|640795381 Staphylococcus aureus aureus Newman IMG   hypothetical protein
img|640796224 Staphylococcus aureus aureus Newman IMG   hypothetical protein
img|641203571 Staphylococcus aureus phage phiNM provirus IMG   hypothetical protein
img|641204877 Staphylococcus phage phiPVL108 IMG   hypothetical protein
img|641210056 Staphylococcus phage tp310-3 provirus IMG   hypothetical protein
kegg|sae:NWMN_0273 Staphylococcus aureus subsp. aureus Newman KEGG   hypothetical protein
kegg|sae:NWMN_1001 Staphylococcus aureus subsp. aureus Newman KEGG   hypothetical protein
kegg|sae:NWMN_1807 Staphylococcus aureus subsp. aureus Newman KEGG   hypothetical protein
ref|NP_958641.1 Staphylococcus phage 77 RefSeq   77ORF018
ref|YP_001331307.1 Staphylococcus aureus subsp. aureus str. Newman RefSeq   hypothetical protein NWMN_0273
ref|YP_001332035.1 Staphylococcus aureus subsp. aureus str. Newman RefSeq   hypothetical protein NWMN_1001
ref|YP_001332841.1 Staphylococcus aureus subsp. aureus str. Newman RefSeq   hypothetical protein NWMN_1807
ref|YP_001429979.1 Staphylococcus phage tp310-3 RefSeq   hypothetical protein SPTP3103_gp17
ref|YP_002939688.1 Staphylococcus phage phiPVL-CN125 RefSeq   hypothetical protein CUR017
ref|YP_873965.1 Staphylococcus phage phiNM RefSeq   hypothetical protein SAPPV1_gp16
ref|YP_918910.1 Staphylococcus phage phiPVL108 RefSeq   hypothetical protein SABPV108_gp20
tr|A0EWI7 Staphylococcus aureus phage phiNM1 TrEMBL   Putative uncharacterized protein
tr|A0EWQ1 Staphylococcus aureus phage phiNM2 TrEMBL   Putative uncharacterized protein
tr|A0EX33 Staphylococcus aureus phage phiNM4 TrEMBL   Putative uncharacterized protein
tr|A0ZS22 Staphylococcus phage phiPVL108 TrEMBL   Putative uncharacterized protein
tr|A6QDW3 Staphylococcus aureus (strain Newman) TrEMBL   Putative uncharacterized protein
tr|A7TWM9 Staphylococcus phage tp310-3 TrEMBL   Putative uncharacterized protein
tr|A7YGQ7 Staphylococcus phage 80 TrEMBL   Conserved protein
tr|C5I641 Staphylococcus phage phiPVL-CN125 TrEMBL   Putative uncharacterized protein
tr|Q6R842 Staphylococcus phage 77 TrEMBL   77ORF018


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  Functional Coupling

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  Attributes

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  Protein Families

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