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SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
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Protein fig|387910.2.peg.17: Siphoviridae Staphylococcus aureus phage phiNM4

This feature in The SEED Viewer

NCBI Taxonomy Id: 387910

Current Assignment: Phage phi 11 orf14 protein homolog
Translate Function Assignments


Context on contig DQ530362 from base 2533 to 13669 (11137 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
4 2997 2533 465 -           Phage protein protein_id|ABF73229.1, gi|104641921
5 3324 3010 315 - 12         Phage repressor protein cI protein_id|ABF73230.1, gi|104641922
6 3476 3712 237 + 151         Phage transcriptional regulator cro protein_id|ABF73231.1, gi|104641923
7 3726 3905 180 + 13         Phage protein protein_id|ABF73232.1, gi|104641924
8 4488 4006 483 - 100         ORF029 protein_id|ABF73233.1, gi|104641925
9 4548 5297 750 + 59         Phage antirepressor protein protein_id|ABF73234.1, gi|104641926
10 5313 5531 219 + 15         Phage phi 11 orf9 protein homolog protein_id|ABF73235.1, gi|104641927
11 5561 5824 264 + 29         Phage protein protein_id|ABF73236.1, gi|104641928
12 5836 5997 162 + 11         Phage phi 11 orf10a protein homolog protein_id|ABF73237.1, gi|104641929
13 6089 6349 261 + 91         Phage phi 11 orf11 protein homolog protein_id|ABF73238.1, gi|104641930
14 6359 6580 222 + 9         Phage phi-ETA orf16 protein homolog protein_id|ABF73239.1, gi|104641931
15 6573 7361 789 + -8         Phage phi 11 orf12 protein homolog protein_id|ABF73240.1, gi|104641932
16 7390 7941 552 + 28     1: 1   Phage ssDNA binding protein protein_id|ABF73241.1, gi|104641933
17 7954 8625 672 + 12         Phage phi 11 orf14 protein homolog protein_id|ABF73242.1, gi|104641934
18 9588 8731 858 - 105         Phage protein protein_id|ABF73243.1, gi|104641935
19 9653 10423 771 + 64     1: 1   Phage DNA replication protein O protein_id|ABF73244.1, gi|104641936
20 10433 11212 780 + 9         Phage DNA helicase loader protein_id|ABF73245.1, gi|104641937
21 11206 11364 159 + -7         Phage protein protein_id|ABF73246.1, gi|104641938
22 11377 11598 222 + 12         Phage phi 11 orf17 protein homolog protein_id|ABF73247.1, gi|104641939
23 11608 12015 408 + 9         Phage-encoded crossover junction endodeoxyribonuclease RusA (EC 3.1.22.4) protein_id|ABF73248.1, gi|104641940
24 12015 12200 186 + -1         Phage phi 11 orf19 protein homolog protein_id|ABF73249.1, gi|104641941
25 12201 12560 360 + 0         Phage phi 11 orf21 protein homolog protein_id|ABF73250.1, gi|104641942
26 12560 12814 255 + -1         Phage protein protein_id|ABF73251.1, gi|104641943
27 12820 13062 243 + 5         Phage phi 11 orf22 protein homolog protein_id|ABF73252.1, gi|104641944
28 13077 13478 402 + 14         Phage protein protein_id|ABF73253.1, gi|104641945
29 13475 13669 195 + -4         Phage protein protein_id|ABF73254.1, gi|104641946

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|387910.2.peg.17 Phage phi 11 orf14 protein homolog
MQYITRYQKDNDGTYSVVATGVELEQSHIDLLENGYPLKAEVEVPDNKKLSIEQRKKIFA
MCRDIELHWGEPVESTRKLLQTELEIMKGYEEISLRDCSMKVARELIELIIAFMFHHQIP
MSVETSKLLSEDKALLYWATINRNCVICGKPHADLAHYEAVGRGMNRNKMNHYDKHVLAL
CREHHNEQHAIGVKSFDDKYHLHDSWIKVDERLNKMLKGEKKE

MD5 = d8103c2201b023f3f993bf5c4c1a3277


  DNA Sequence

>fig|387910.2.peg.17 Phage phi 11 orf14 protein homolog
atgcaatacattacaagataccagaaagataacgacggtacttattccgtcgttgctact
ggtgttgaacttgaacaaagtcacattgacttactagaaaacggatatccactaaaagca
gaagtagaggttccggacaataaaaaactatctatagaacaacgcaaaaaaatattcgca
atgtgtagagatatagaacttcactggggcgaaccagtagaatcaactagaaaattatta
caaacagaattggaaattatgaaaggttatgaagaaatcagtctgcgcgactgttctatg
aaagttgcaagggagttaatagaactgattatagcgtttatgtttcatcatcaaatacct
atgagtgtagaaacgagtaagttgttaagcgaagataaagcgttattatattgggctaca
atcaaccgcaactgtgtaatatgcggaaagcctcacgcagacctggcacattatgaagca
gtcggcagaggcatgaacagaaacaaaatgaaccactatgacaaacatgtattagcgtta
tgtcgcgaacatcacaacgagcaacatgcgattggcgttaagtcgtttgatgataaatac
cacttgcatgactcgtggataaaagttgatgagaggctcaataaaatgttgaaaggagag
aaaaaggaatga


  DNA with Flanking Sequence

>fig|387910.2.peg.17 Phage phi 11 orf14 protein homolog
cagcagggtttcaagctggagaattcacagtgaaagttaaaaatattgaattcaatgata
gagaaaatagatatttcacaatcgtatttgaaaatgatgaaggcaaacaatataaacata
atcaatttgtaccgccgtataaatatgatttccaagaaaaacaattgattgaattagtta
ctcgattaggtattaagttaaatcttcctagcttagattttgataccaatgatcttattg
gtaagttttgtcacttggtattgaaatggaaattcaatgaagatgaaggtaagtatttta
cggatttttcatttattaaaccttacaaaaagggcgatgatgttgttaacaaacctattc
cgaagacagataagcaaaaagctgaagaaaataacggggcacaacaacaaacatcaatgt
ctcaacaaagcaatccatttgaaagcagtggccaatttggatatgacgaccaagatttag
cgttttaaggtgtggtttaaatgcaatacattacaagataccagaaagataacgacggta
cttattccgtcgttgctactggtgttgaacttgaacaaagtcacattgacttactagaaa
acggatatccactaaaagcagaagtagaggttccggacaataaaaaactatctatagaac
aacgcaaaaaaatattcgcaatgtgtagagatatagaacttcactggggcgaaccagtag
aatcaactagaaaattattacaaacagaattggaaattatgaaaggttatgaagaaatca
gtctgcgcgactgttctatgaaagttgcaagggagttaatagaactgattatagcgttta
tgtttcatcatcaaatacctatgagtgtagaaacgagtaagttgttaagcgaagataaag
cgttattatattgggctacaatcaaccgcaactgtgtaatatgcggaaagcctcacgcag
acctggcacattatgaagcagtcggcagaggcatgaacagaaacaaaatgaaccactatg
acaaacatgtattagcgttatgtcgcgaacatcacaacgagcaacatgcgattggcgtta
agtcgtttgatgataaataccacttgcatgactcgtggataaaagttgatgagaggctca
ataaaatgttgaaaggagagaaaaaggaatgaatagactaagaataataaaaatagcact
cctaatcgtcatcttggcggaagagattagaaatgctatgcatgctgtaaaagtggagaa
aattttaaaatctccgtttagttaatacaggtttttacaaaagctttaccataggcggac
aaactaattgagccttttttgatgtctattacccaggggctgtaatgtaactttaatact
tcaaattcaatgccagaaagtttacttattgtttctaggttgtgtcctgactttaacatt
cttttaacaaattctaatcccgaaacaaatctttgtttttctataatcttattaaagtga
tttaaaaactgaggagcataaaacttattataaattcctttttttgttaagtaagacatg
tcaaaagtttcatttaaaacccctaaccttactaggttattaattgaaatttcggttgat
tctatatctaacggagagtcttttattaacgtgtccgatatattcataccgt


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
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  Functional Coupling

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  Attributes

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  Protein Families

No protein families found

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