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SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
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Protein fig|387910.2.peg.16: Siphoviridae Staphylococcus aureus phage phiNM4

This feature in The SEED Viewer

NCBI Taxonomy Id: 387910

Current Assignment: Phage ssDNA binding protein
Translate Function Assignments



Context on contig DQ530362 from base 1569 to 13062 (11494 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
3 2501 1569 933 -           Hypothetical protein, SAV0849 homolog [SA bacteriophages 11, Mu50B] protein_id|ABF73228.1, gi|104641920
4 2997 2533 465 - 31         Phage protein protein_id|ABF73229.1, gi|104641921
5 3324 3010 315 - 12         Phage repressor protein cI protein_id|ABF73230.1, gi|104641922
6 3476 3712 237 + 151         Phage transcriptional regulator cro protein_id|ABF73231.1, gi|104641923
7 3726 3905 180 + 13         Phage protein protein_id|ABF73232.1, gi|104641924
8 4488 4006 483 - 100         ORF029 protein_id|ABF73233.1, gi|104641925
9 4548 5297 750 + 59         Phage antirepressor protein protein_id|ABF73234.1, gi|104641926
10 5313 5531 219 + 15         Phage phi 11 orf9 protein homolog protein_id|ABF73235.1, gi|104641927
11 5561 5824 264 + 29         Phage protein protein_id|ABF73236.1, gi|104641928
12 5836 5997 162 + 11         Phage phi 11 orf10a protein homolog protein_id|ABF73237.1, gi|104641929
13 6089 6349 261 + 91         Phage phi 11 orf11 protein homolog protein_id|ABF73238.1, gi|104641930
14 6359 6580 222 + 9         Phage phi-ETA orf16 protein homolog protein_id|ABF73239.1, gi|104641931
15 6573 7361 789 + -8         Phage phi 11 orf12 protein homolog protein_id|ABF73240.1, gi|104641932
16 7390 7941 552 + 28     1: 1   Phage ssDNA binding protein protein_id|ABF73241.1, gi|104641933
17 7954 8625 672 + 12         Phage phi 11 orf14 protein homolog protein_id|ABF73242.1, gi|104641934
18 9588 8731 858 - 105         Phage protein protein_id|ABF73243.1, gi|104641935
19 9653 10423 771 + 64     1: 1   Phage DNA replication protein O protein_id|ABF73244.1, gi|104641936
20 10433 11212 780 + 9         Phage DNA helicase loader protein_id|ABF73245.1, gi|104641937
21 11206 11364 159 + -7         Phage protein protein_id|ABF73246.1, gi|104641938
22 11377 11598 222 + 12         Phage phi 11 orf17 protein homolog protein_id|ABF73247.1, gi|104641939
23 11608 12015 408 + 9         Phage-encoded crossover junction endodeoxyribonuclease RusA (EC 3.1.22.4) protein_id|ABF73248.1, gi|104641940
24 12015 12200 186 + -1         Phage phi 11 orf19 protein homolog protein_id|ABF73249.1, gi|104641941
25 12201 12560 360 + 0         Phage phi 11 orf21 protein homolog protein_id|ABF73250.1, gi|104641942
26 12560 12814 255 + -1         Phage protein protein_id|ABF73251.1, gi|104641943
27 12820 13062 243 + 5         Phage phi 11 orf22 protein homolog protein_id|ABF73252.1, gi|104641944

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

Subsystem Curator Role
Phage_replication RamyA Single stranded DNA-binding protein, phage-associated


  Protein Sequence

>fig|387910.2.peg.16 Phage ssDNA binding protein
MKITGQAQFTKETNQEKFYNGSAGFQAGEFTVKVKNIEFNDRENRYFTIVFENDEGKQYK
HNQFVPPYKYDFQEKQLIELVTRLGIKLNLPSLDFDTNDLIGKFCHLVLKWKFNEDEGKY
FTDFSFIKPYKKGDDVVNKPIPKTDKQKAEENNGAQQQTSMSQQSNPFESSGQFGYDDQD
LAF

MD5 = 28307ed3318649679f379a7de3c6f225


  DNA Sequence

>fig|387910.2.peg.16 Phage ssDNA binding protein
atgaaaatcacaggacaagcgcaatttactaaagaaacaaatcaagaaaagttttataac
ggctcagcagggtttcaagctggagaattcacagtgaaagttaaaaatattgaattcaat
gatagagaaaatagatatttcacaatcgtatttgaaaatgatgaaggcaaacaatataaa
cataatcaatttgtaccgccgtataaatatgatttccaagaaaaacaattgattgaatta
gttactcgattaggtattaagttaaatcttcctagcttagattttgataccaatgatctt
attggtaagttttgtcacttggtattgaaatggaaattcaatgaagatgaaggtaagtat
tttacggatttttcatttattaaaccttacaaaaagggcgatgatgttgttaacaaacct
attccgaagacagataagcaaaaagctgaagaaaataacggggcacaacaacaaacatca
atgtctcaacaaagcaatccatttgaaagcagtggccaatttggatatgacgaccaagat
ttagcgttttaa


  DNA with Flanking Sequence

>fig|387910.2.peg.16 Phage ssDNA binding protein
tattgaaactattcaaaaacttagagatatgacattgaatgatgtgatgaaaaataagtc
taaaaaaccaacgtttaatgattggggagaagttgctgaacgaattgtcagtatgtacag
attaataggaaaacttcaagaagaatacaaattccactttgttattacaggtcatgaagg
tatcaacaaagataaagatgatgaaggtagcactatcaaccctactatcactattgaagc
gcaagaacaaattaaaaaagctattacttctcaaagtgatgtgttagctagggcaatgat
tgaagaatttgatgataacggagaaaagaaagctagatatattctaaacgctgaaccttc
taatacgtttgaaacaaagattagacattcaccttcaataacaattaacaataagaaatt
tgcaaatcctagcattacggacgtagtagaagcaattagaaatggaaactaaaaattaat
taaaaggacggtatttaattatgaaaatcacaggacaagcgcaatttactaaagaaacaa
atcaagaaaagttttataacggctcagcagggtttcaagctggagaattcacagtgaaag
ttaaaaatattgaattcaatgatagagaaaatagatatttcacaatcgtatttgaaaatg
atgaaggcaaacaatataaacataatcaatttgtaccgccgtataaatatgatttccaag
aaaaacaattgattgaattagttactcgattaggtattaagttaaatcttcctagcttag
attttgataccaatgatcttattggtaagttttgtcacttggtattgaaatggaaattca
atgaagatgaaggtaagtattttacggatttttcatttattaaaccttacaaaaagggcg
atgatgttgttaacaaacctattccgaagacagataagcaaaaagctgaagaaaataacg
gggcacaacaacaaacatcaatgtctcaacaaagcaatccatttgaaagcagtggccaat
ttggatatgacgaccaagatttagcgttttaaggtgtggtttaaatgcaatacattacaa
gataccagaaagataacgacggtacttattccgtcgttgctactggtgttgaacttgaac
aaagtcacattgacttactagaaaacggatatccactaaaagcagaagtagaggttccgg
acaataaaaaactatctatagaacaacgcaaaaaaatattcgcaatgtgtagagatatag
aacttcactggggcgaaccagtagaatcaactagaaaattattacaaacagaattggaaa
ttatgaaaggttatgaagaaatcagtctgcgcgactgttctatgaaagttgcaagggagt
taatagaactgattatagcgtttatgtttcatcatcaaatacctatgagtgtagaaacga
gtaagttgttaagcgaagataaagcgttattatattgggctacaatcaaccgcaactgtg
taatatgcggaaagcctcacgcagacctggcacattatgaagcagtcggcag


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

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  Functional Coupling

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  Attributes

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  Protein Families

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