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SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
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Protein fig|351745.7.peg.2307: Shewanella sp. W3-18-1

This feature in The SEED Viewer

NCBI Taxonomy Id: 351745

Current Assignment: Phage minor tail protein #tail protein M
Translate Function Assignments


Context on contig NC_008750 from base 2842441 to 2853114 (10674 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
2301 2842959 2842441 519 -           lipoprotein, putative Sputw3181_2461, YP_963839.1, gi|120599265, InterPro:IPR000437, GeneID:4659240
2302 2843759 2843046 714 - 86 5 1: 1 cwn
ff		 Phage tail assembly protein #Phage tail assembly protein K Sputw3181_2462, YP_963840.1, gi|120599266, InterPro:IPR000064, InterPro:IPR000555, GeneID:4659290
2303 2844536 2843811 726 - 51 4 1: 1 cwn
ff		 Phage minor tail protein #Phage minor tail protein L Sputw3181_2463, YP_963841.1, gi|120599267, InterPro:IPR006487, GeneID:4659352
2304 2844816 2844529 288 - -8         FIG01061737: hypothetical protein Sputw3181_2464, YP_963842.1, gi|120599268, GeneID:4659415
2305 2846077 2844803 1275 - -14         DGR reverse transcriptase Sputw3181_2465, YP_963843.1, gi|120599269, InterPro:IPR000477, GeneID:4659465
2306 2847692 2846487 1206 - 409         hypothetical protein Sputw3181_2467, YP_963845.1, gi|120599271, GeneID:4659516
2307 2848067 2847732 336 - 39   1: 1 cwn
ff		 Phage minor tail protein #tail protein M Sputw3181_2468, YP_963846.1, gi|120599272, InterPro:IPR010265, GeneID:4659540
2308 2848376 2848071 306 - 3         hypothetical protein Sputw3181_2469, YP_963847.1, gi|120599273, GeneID:4659547
2309 2851794 2848378 3417 - 1 5 1: 1 ff Phage tail length tape-measure protein 1 Sputw3181_2470, YP_963848.1, gi|120599274, InterPro:IPR006431, InterPro:IPR009628, GeneID:4659657
2310 2852018 2851875 144 - 80       ff FIG01060123: hypothetical protein Sputw3181_2471, YP_963849.1, gi|120599275, GeneID:4659654
2311 2852551 2852057 495 - 38       ff Lambda gpG analog Sputw3181_2472, YP_963850.1, gi|120599276, GeneID:4660239
2312 2853114 2852641 474 - 89       cwn
ff		 prophage LambdaSo, major tail protein V, putative Sputw3181_2473, YP_963851.1, gi|120599277, GeneID:4660250

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

Subsystem Curator Role
Phage_tail_proteins_2 RamyA Phage minor tail protein


  Protein Sequence

>fig|351745.7.peg.2307 Phage minor tail protein #tail protein M
MPQTFTWAPDNGATGDTQYRTRSAQFGDGYSQSVGDGINSKVQSWPLTFTKNKATAEAIV
AFLDEHQGAKSFIWTPPLGSQSLWQVKQVTNTPLGGGMYRIAATFEQAFHP

MD5 = 1daa8e64b5fc710e56fd2c117d350dc9


  DNA Sequence

>fig|351745.7.peg.2307 Phage minor tail protein #tail protein M
atgcctcaaacattcacatgggcaccagataatggcgccacaggcgacacccaatatcgc
actcgctctgcccagtttggtgatggctacagccaatcagtaggcgatggcattaacagc
aaggtgcaaagctggccgctaacgttcaccaaaaacaaagccacggcggaggcgatagtc
gcctttcttgatgaacaccaaggcgctaagtcatttatctggacgccaccccttggtagt
caatcgctatggcaagttaaacaggtcaccaacaccccattaggcggcggcatgtatcgc
atcgccgccactttcgaacaagcatttcatccttga


  DNA with Flanking Sequence

>fig|351745.7.peg.2307 Phage minor tail protein #tail protein M
tcctaacgtcatcatcaatcagcaaattattgtgccagaaagtaataacaataacggggc
taacaatacaaatatgaacgaggttattaaggcttacgcggagtcatctaagcaaggtac
taaaacacaaatcgcgctagaacttagaccgggtggaatgatttggcgagcaatgaaggg
agggtattaaggtgtatcaatataacaaagaggtattaattaccttgctaagtgattccg
ctattcagtttttctttaatgatgtcacccataatacaactgcaatagaaattcgggaga
gagtgagagcgttttctgaggttttagcgggaattttagtcactgtttctgccgatggtg
attaccgcatggatattgccaagcagctaaacgccaaaacgcagcaagtgaccgctgata
tggaagccatgatgattgaatctttgcagccaaatgggtttatttggcagaaaattcaaa
aaatgaaaggcttataaataatgcctcaaacattcacatgggcaccagataatggcgcca
caggcgacacccaatatcgcactcgctctgcccagtttggtgatggctacagccaatcag
taggcgatggcattaacagcaaggtgcaaagctggccgctaacgttcaccaaaaacaaag
ccacggcggaggcgatagtcgcctttcttgatgaacaccaaggcgctaagtcatttatct
ggacgccaccccttggtagtcaatcgctatggcaagttaaacaggtcaccaacaccccat
taggcggcggcatgtatcgcatcgccgccactttcgaacaagcatttcatccttgatgcg
ccctggcgctgaaccaatctatttatggagttaatatggctatagcaacagtcaatctag
gcacatctccgtcgggagctggcggcgatacagcgcgtaacttagccgaaaaatttaatg
ctaatttcagcgcgccgactcattccgcttcccgcgaagtcggcacgtcaaatgataatc
atgtcattgacaaagcaggactgcagattctgattaaagatccacgtcgacaggaggttg
aggcgttaagcggcggacgaaacactgtcatttatgattcccaaggcaatccaaatgtga
tggttgtggtgccgagattcacctacgaatcgcttggcctaactgacctacaacttggaa
cgggaaccccaaccgcctttttgacaaacggagccccacgcggagaaatattgatcgcaa
aatatctcgccagcgccggcggtacaacgtgctcagttgttggtggtgttcagccattaa
catcggttacttatga


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
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  Functional Coupling

Score Peg Function
5 fig|351745.7.peg.2302 Phage tail assembly protein #Phage tail assembly protein K
4 fig|351745.7.peg.2303 Phage minor tail protein #Phage minor tail protein L
5 fig|351745.7.peg.2309 Phage tail length tape-measure protein 1


  Attributes

Help on Attributes

Key
Link Explains Key		 Value
evidence_code cwn
evidence_code ff
PSORT::unknown unknown
similar_to_human no


  Protein Families

No protein families found

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