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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|351745.7.peg.2305: Shewanella sp. W3-18-1

This feature in The SEED Viewer

NCBI Taxonomy Id: 351745

Current Assignment: DGR reverse transcriptase
Translate Function Assignments



Context on contig NC_008750 from base 2839301 to 2851794 (12494 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
2297 2839951 2839301 651 -         cwn
ff
Phage tail assembly protein I Sputw3181_2457, YP_963835.1, gi|120599261, InterPro:IPR002173, InterPro:IPR010654, GeneID:4659601
2298 2840962 2840072 891 - 120         uncharacterized phage-encoded protein Sputw3181_2458, YP_963836.1, gi|120599262, GeneID:4659037
2299 2841633 2840959 675 - -4         Roi protein Sputw3181_2459, YP_963837.1, gi|120599263, InterPro:IPR010916, GeneID:4659015
2300 2841911 2842402 492 + 277         hypothetical protein Sputw3181_2460, YP_963838.1, gi|120599264, InterPro:IPR005569, GeneID:4658986
2301 2842959 2842441 519 - 38         lipoprotein, putative Sputw3181_2461, YP_963839.1, gi|120599265, InterPro:IPR000437, GeneID:4659240
2302 2843759 2843046 714 - 86     1: 1 cwn
ff
Phage tail assembly protein #Phage tail assembly protein K Sputw3181_2462, YP_963840.1, gi|120599266, InterPro:IPR000064, InterPro:IPR000555, GeneID:4659290
2303 2844536 2843811 726 - 51     1: 1 cwn
ff
Phage minor tail protein #Phage minor tail protein L Sputw3181_2463, YP_963841.1, gi|120599267, InterPro:IPR006487, GeneID:4659352
2304 2844816 2844529 288 - -8         FIG01061737: hypothetical protein Sputw3181_2464, YP_963842.1, gi|120599268, GeneID:4659415
2305 2846077 2844803 1275 - -14         DGR reverse transcriptase Sputw3181_2465, YP_963843.1, gi|120599269, InterPro:IPR000477, GeneID:4659465
2306 2847692 2846487 1206 - 409         hypothetical protein Sputw3181_2467, YP_963845.1, gi|120599271, GeneID:4659516
2307 2848067 2847732 336 - 39     1: 1 cwn
ff
Phage minor tail protein #tail protein M Sputw3181_2468, YP_963846.1, gi|120599272, InterPro:IPR010265, GeneID:4659540
2308 2848376 2848071 306 - 3         hypothetical protein Sputw3181_2469, YP_963847.1, gi|120599273, GeneID:4659547
2309 2851794 2848378 3417 - 1     1: 1 ff Phage tail length tape-measure protein 1 Sputw3181_2470, YP_963848.1, gi|120599274, InterPro:IPR006431, InterPro:IPR009628, GeneID:4659657

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|351745.7.peg.2305 DGR reverse transcriptase
MNTLEPIRGGNWNNGVNAGLGALNLNNSRSNSNNNIGFRPALDYARSKHLTGCCQRKNEK
DALAPAIAEIDLATPAGAPAGCLFEQIYQFENLLNAAYQCRKGKTKSNSTLVFFNNLEEN
IIQIQNELIWGMYLSSPYHHFYVFEPKRRLISAPSFRDRVVHRAIYNVIEPILDRQYIYD
SYACRRGKGTHRGADRAQLFIRRVEKTHSKAYALKADISRYFSSIDHHILKSLVSAKIQC
ERTKCLLFYIIDSSPSDAHGVGIPLGNLTSQVFANLYLNELDRFAKHTLKAKNYVRYMDD
FVIIHHDKQQLHQWRVMIERFINCQLRLKTNSKTQVFPVAASAGRSLDFLGYRIYANKKL
LRKSSVKRIKAKLKIFRKKYSAGEIDIKDINQTIQSWIGHASHADTFSLRVSLLSQPFKR
GEHV

MD5 = 4b202d3b20220cf3c53bbbd22c5cc834


  DNA Sequence

>fig|351745.7.peg.2305 DGR reverse transcriptase
atgaatacactggaaccgatccgtggcggcaactggaacaacggcgtcaacgccggcctt
ggcgcgctcaacctcaataactcgcgttcgaactcgaacaacaacatcggtttccgtcca
gctcttgattacgccagaagcaagcatcttactgggtgctgccagcgcaaaaatgaaaag
gatgcactagccccggccattgccgaaatagatttagccacgcccgccggtgcgccagcg
ggctgtttatttgagcaaatatatcagtttgaaaatttactaaatgcggcttatcagtgt
cgcaaagggaaaacgaaatccaacagcacattagtcttttttaacaatctagaagaaaac
atcatccagatccaaaacgagttgatatggggtatgtatctatcatctccataccaccat
ttttatgtcttcgagccaaagcgaaggttgatatccgcaccaagctttcgagacagggtg
gtgcaccgcgcaatttataatgtcatcgagccgattcttgaccggcaatatatatacgac
tcttacgcttgccgtcgaggcaaaggaacacaccgtggcgctgatagagctcagctattt
attaggcgcgtagagaaaacgcacagcaaggcttacgcgctaaaagctgacattagccgc
tatttctctagcatagatcaccacatacttaagtcgcttgtcagcgctaaaatacagtgc
gagcgaaccaagtgcctactgttttacatcatagacagcagcccttctgacgcgcatggc
gttgggatccctcttggcaatctcaccagccaagtttttgcaaacctgtatctaaacgag
ctggacagatttgctaagcatacgctaaaagccaaaaattacgtcagatacatggatgat
tttgtgatcattcatcacgacaagcagcagctgcatcagtggagggtgatgatagagcga
ttcattaattgtcagctaaggctgaaaacaaacagcaaaacacaagtattccccgttgca
gcatctgccggaagaagccttgattttcttggctatcgcatatatgcaaataaaaagtta
ctgcgtaaaagcagcgtgaagcgcattaaagcaaagttaaaaatatttcgcaaaaaatac
agtgctggagagattgatattaaagacataaaccaaacgatacagtcatggatcggccac
gccagccacgctgatacattctcgctgagagtctcgctattaagccaaccattcaaaaga
ggtgaacatgtttaa


  DNA with Flanking Sequence

>fig|351745.7.peg.2305 DGR reverse transcriptase
cgtcagcgccggccttggcgcgctcaacctcaattactcgcgttcgagctcgagcatcta
cgtcggtttccgtccagcttattttgcgtaaagtagactgtgttttgttagctgcgcgat
agcgcagcggttaattaaagagtagcgcacatgccagcattgataatcgaagaaaaatgc
agagagatgatagtgtttggctatcaagccattaaacagttcccaaaacatgaaacacat
gttcttggcgctgaaattcggctgtcaatgctgaatatgcagcgcctaatcatcactgca
atgaagcgctaccacaaaaagaccaccttaaccgacttggacgtagaactagcggtgcta
aagcggatgataaggctggccaaggatctgcgttatatcgacatcagccggtatcagcga
tggatagtgcagattgttgaaattggcaaaatgacgggaggatggattaaatcaattaac
aataaacaggctaatgcattatgaatacactggaaccgatccgtggcggcaactggaaca
acggcgtcaacgccggccttggcgcgctcaacctcaataactcgcgttcgaactcgaaca
acaacatcggtttccgtccagctcttgattacgccagaagcaagcatcttactgggtgct
gccagcgcaaaaatgaaaaggatgcactagccccggccattgccgaaatagatttagcca
cgcccgccggtgcgccagcgggctgtttatttgagcaaatatatcagtttgaaaatttac
taaatgcggcttatcagtgtcgcaaagggaaaacgaaatccaacagcacattagtctttt
ttaacaatctagaagaaaacatcatccagatccaaaacgagttgatatggggtatgtatc
tatcatctccataccaccatttttatgtcttcgagccaaagcgaaggttgatatccgcac
caagctttcgagacagggtggtgcaccgcgcaatttataatgtcatcgagccgattcttg
accggcaatatatatacgactcttacgcttgccgtcgaggcaaaggaacacaccgtggcg
ctgatagagctcagctatttattaggcgcgtagagaaaacgcacagcaaggcttacgcgc
taaaagctgacattagccgctatttctctagcatagatcaccacatacttaagtcgcttg
tcagcgctaaaatacagtgcgagcgaaccaagtgcctactgttttacatcatagacagca
gcccttctgacgcgcatggcgttgggatccctcttggcaatctcaccagccaagtttttg
caaacctgtatctaaacgagctggacagatttgctaagcatacgctaaaagccaaaaatt
acgtcagatacatggatgattttgtgatcattcatcacgacaagcagcagctgcatcagt
ggagggtgatgatagagcgattcattaattgtcagctaaggctgaaaacaaacagcaaaa
cacaagtattccccgttgcagcatctgccggaagaagccttgattttcttggctatcgca
tatatgcaaataaaaagttactgcgtaaaagcagcgtgaagcgcattaaagcaaagttaa
aaatatttcgcaaaaaatacagtgctggagagattgatattaaagacataaaccaaacga
tacagtcatggatcggccacgccagccacgctgatacattctcgctgagagtctcgctat
taagccaaccattcaaaagaggtgaacatgtttaattatatttttgagggcaaaacttac
actgacacatcaaatgaatacatgttggcaatcggcatgagtgctgaacagatcgagtca
gtaatgagtcaaaaggcatacgaagaaggagaaggtgccatcgcaaaaagaaaggctgca
tacacaaaagagtcagacccgttatttttagagtggcaatacgataagacgcccgctaca
gaagcaaaatggcgagccaaagtgctagaaataaaagcaagattccctatggtatcagcc
gatgcttagtgctgatattcaaaccatcgaaccgggcaatgaaattattctttatgaaat
cgacggtaccgcctttggcgccgatatactgcgctttcatgcacacaatattccgtactc
agatgcggaccttaatcaatcagagttaccagcgcgcatcatccattggcagggtgagca
atacagcccatggccagcacagctagaaggggttgaggttaactcagatggctca


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
GO:0003723       F:RNA binding
GO:0003964       F:RNA-directed DNA polymerase activity
GO:0006278       P:RNA-dependent DNA replication
fig|351745.9.peg.2580 Shewanella sp. W3-18-1 FIG   DGR reverse transcriptase
gb|ABM25289.1 Shewanella sp. W3-18-1     RNA-directed DNA polymerase (Reverse transcriptase)
gi|120559362 Shewanella sp. W3-18-1 NCBI   RNA-directed DNA polymerase (Reverse transcriptase)
gi|120599269 Shewanella sp. W3-18-1 NCBI   RNA-directed DNA polymerase (Reverse transcriptase)
img|639816556 Shewanella sp. W3-18-1 IMG   RNA-directed DNA polymerase (Reverse transcriptase)
kegg|shw:Sputw3181_2465 Shewanella sp. W3-18-1 KEGG   RNA-directed DNA polymerase (reverse transcriptase)
ref|YP_963843.1 Shewanella sp. W3-18-1 RefSeq   RNA-directed DNA polymerase (Reverse transcriptase)
tr|A1RKU4 Shewanella sp. (strain W3-18-1) TrEMBL   RNA-directed DNA polymerase (Reverse transcriptase)


  Links to Related Entries in Other Sites

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  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key
Value
PSORT::unknown unknown
similar_to_human no


  Protein Families

No protein families found

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