The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
 The SEED


FIG search

Protein fig|351745.7.peg.2303: Shewanella sp. W3-18-1

This feature in The SEED Viewer

NCBI Taxonomy Id: 351745

Current Assignment: Phage minor tail protein #Phage minor tail protein L
Translate Function Assignments


Context on contig NC_008750 from base 2833092 to 2851794 (18703 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
2296 2839295 2833092 6204 -   4 1: 2 cwn Phage tail fiber protein #Phage host specificity protein J Sputw3181_2456, YP_963834.1, gi|120599260, InterPro:IPR000276, InterPro:IPR003610, InterPro:IPR003961, GeneID:4659013
2297 2839951 2839301 651 - 5 4   cwn
ff		 Phage tail assembly protein I Sputw3181_2457, YP_963835.1, gi|120599261, InterPro:IPR002173, InterPro:IPR010654, GeneID:4659601
2298 2840962 2840072 891 - 120         uncharacterized phage-encoded protein Sputw3181_2458, YP_963836.1, gi|120599262, GeneID:4659037
2299 2841633 2840959 675 - -4         Roi protein Sputw3181_2459, YP_963837.1, gi|120599263, InterPro:IPR010916, GeneID:4659015
2300 2841911 2842402 492 + 277         hypothetical protein Sputw3181_2460, YP_963838.1, gi|120599264, InterPro:IPR005569, GeneID:4658986
2301 2842959 2842441 519 - 38         lipoprotein, putative Sputw3181_2461, YP_963839.1, gi|120599265, InterPro:IPR000437, GeneID:4659240
2302 2843759 2843046 714 - 86 4 1: 1 cwn
ff		 Phage tail assembly protein #Phage tail assembly protein K Sputw3181_2462, YP_963840.1, gi|120599266, InterPro:IPR000064, InterPro:IPR000555, GeneID:4659290
2303 2844536 2843811 726 - 51   1: 1 cwn
ff		 Phage minor tail protein #Phage minor tail protein L Sputw3181_2463, YP_963841.1, gi|120599267, InterPro:IPR006487, GeneID:4659352
2304 2844816 2844529 288 - -8         FIG01061737: hypothetical protein Sputw3181_2464, YP_963842.1, gi|120599268, GeneID:4659415
2305 2846077 2844803 1275 - -14         DGR reverse transcriptase Sputw3181_2465, YP_963843.1, gi|120599269, InterPro:IPR000477, GeneID:4659465
2306 2847692 2846487 1206 - 409         hypothetical protein Sputw3181_2467, YP_963845.1, gi|120599271, GeneID:4659516
2307 2848067 2847732 336 - 39 5 1: 1 cwn
ff		 Phage minor tail protein #tail protein M Sputw3181_2468, YP_963846.1, gi|120599272, InterPro:IPR010265, GeneID:4659540
2308 2848376 2848071 306 - 3         hypothetical protein Sputw3181_2469, YP_963847.1, gi|120599273, GeneID:4659547
2309 2851794 2848378 3417 - 1 5 1: 1 ff Phage tail length tape-measure protein 1 Sputw3181_2470, YP_963848.1, gi|120599274, InterPro:IPR006431, InterPro:IPR009628, GeneID:4659657

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

Subsystem Curator Role
Phage_tail_proteins_2 RamyA Phage minor tail protein


  Protein Sequence

>fig|351745.7.peg.2303 Phage minor tail protein #Phage minor tail protein L
MLSADIQTIEPGNEIILYEIDGTAFGADILRFHAHNIPYSDADLNQSELPARIIHWQGEQ
YSPWPAQLEGVEVNSDGSPSTPTLTVANLDGSISALCLYFQNMEQAKVTIRRTLAKYLDA
ANFPSGNSEADPTQEAVEIWYVDKKVNEDNVAVTFELSNPADLSGYKIGRQMTAYCHWCQ
RGEYRGADCGYTGEAMFTDEDQPTDNPALDQCSGTIKGCTLRFGENAELPHGGFPSVRLI
R

MD5 = 9af23b679f8b9a7fa7f255dc83de3caf


  DNA Sequence

>fig|351745.7.peg.2303 Phage minor tail protein #Phage minor tail protein L
atgcttagtgctgatattcaaaccatcgaaccgggcaatgaaattattctttatgaaatc
gacggtaccgcctttggcgccgatatactgcgctttcatgcacacaatattccgtactca
gatgcggaccttaatcaatcagagttaccagcgcgcatcatccattggcagggtgagcaa
tacagcccatggccagcacagctagaaggggttgaggttaactcagatggctcacccagc
acaccaacgctaactgtggctaatctcgatggcagtattagcgccctgtgtttgtacttt
cagaacatggaacaagccaaggtcactattcgccgcacgctggcaaaataccttgatgct
gccaacttccccagtggcaatagcgaagcggatccaacccaagaagcggtagagatttgg
tatgtcgataaaaaagtcaacgaggataatgttgccgttacctttgaactatccaatcca
gcagatttgtcaggctataaaatcggccgacaaatgaccgcctattgtcactggtgccag
cgtggcgaatatcgcggcgcagattgcggctacactggtgaggccatgtttaccgatgaa
gatcaaccaaccgataaccccgcactcgaccagtgctcaggtaccatcaaaggctgtacc
ttgcgctttggcgaaaatgccgaattaccccatggcggcttcccaagcgtgcggctaata
cgttaa


  DNA with Flanking Sequence

>fig|351745.7.peg.2303 Phage minor tail protein #Phage minor tail protein L
gattttcttggctatcgcatatatgcaaataaaaagttactgcgtaaaagcagcgtgaag
cgcattaaagcaaagttaaaaatatttcgcaaaaaatacagtgctggagagattgatatt
aaagacataaaccaaacgatacagtcatggatcggccacgccagccacgctgatacattc
tcgctgagagtctcgctattaagccaaccattcaaaagaggtgaacatgtttaattatat
ttttgagggcaaaacttacactgacacatcaaatgaatacatgttggcaatcggcatgag
tgctgaacagatcgagtcagtaatgagtcaaaaggcatacgaagaaggagaaggtgccat
cgcaaaaagaaaggctgcatacacaaaagagtcagacccgttatttttagagtggcaata
cgataagacgcccgctacagaagcaaaatggcgagccaaagtgctagaaataaaagcaag
attccctatggtatcagccgatgcttagtgctgatattcaaaccatcgaaccgggcaatg
aaattattctttatgaaatcgacggtaccgcctttggcgccgatatactgcgctttcatg
cacacaatattccgtactcagatgcggaccttaatcaatcagagttaccagcgcgcatca
tccattggcagggtgagcaatacagcccatggccagcacagctagaaggggttgaggtta
actcagatggctcacccagcacaccaacgctaactgtggctaatctcgatggcagtatta
gcgccctgtgtttgtactttcagaacatggaacaagccaaggtcactattcgccgcacgc
tggcaaaataccttgatgctgccaacttccccagtggcaatagcgaagcggatccaaccc
aagaagcggtagagatttggtatgtcgataaaaaagtcaacgaggataatgttgccgtta
cctttgaactatccaatccagcagatttgtcaggctataaaatcggccgacaaatgaccg
cctattgtcactggtgccagcgtggcgaatatcgcggcgcagattgcggctacactggtg
aggccatgtttaccgatgaagatcaaccaaccgataaccccgcactcgaccagtgctcag
gtaccatcaaaggctgtaccttgcgctttggcgaaaatgccgaattaccccatggcggct
tcccaagcgtgcggctaatacgttaaaagcattttcccgccgtcagcaaaatggtctaac
acaaaaagcaggtccctatgcacccaaccattttacatgcctttagtcagcatgcggcca
gctgctaccctaatgaatgttgcggattgctgatcaagcaaggcgacaaagcgcaatatg
tgccatgtgaaaacaaggcaactaacaaagcagatgaatttgtgattgatccactacaat
atgctgccattgaagaacaagggcagatcataggcatctgccacagccacccagatgcga
gcagcaagcctagccaacgtgatattgccatgtgtgaggcgagcggattgccttggcata
tccttagctggcctgatggcgacttacgcaccattgcgccaacgggtgagcgcaaaccgc
tacttgagcgtccgtttgtgcatggcgtatgggattgctatagctgcgtgcgcgactggt
acagtgaggtgcaacaaattctgttgccagactttgagcgccaaga


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
add a new link

  Functional Coupling

Score Peg Function
4 fig|351745.7.peg.2296 Phage tail fiber protein #Phage host specificity protein J
4 fig|351745.7.peg.2297 Phage tail assembly protein I
4 fig|351745.7.peg.2302 Phage tail assembly protein #Phage tail assembly protein K
5 fig|351745.7.peg.2307 Phage minor tail protein #tail protein M
5 fig|351745.7.peg.2309 Phage tail length tape-measure protein 1


  Attributes

Help on Attributes

Key
Link Explains Key		 Value
evidence_code cwn
evidence_code ff
PSORT::unknown unknown
similar_to_human no


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer

Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options

|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions
FIG search