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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|351745.7.peg.2300: Shewanella sp. W3-18-1

This feature in The SEED Viewer

NCBI Taxonomy Id: 351745

Current Assignment: hypothetical protein
Translate Function Assignments



Context on contig NC_008750 from base 2833092 to 2847692 (14601 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
2296 2839295 2833092 6204 -       1: 2 cwn Phage tail fiber protein #Phage host specificity protein J Sputw3181_2456, YP_963834.1, gi|120599260, InterPro:IPR000276, InterPro:IPR003610, InterPro:IPR003961, GeneID:4659013
2297 2839951 2839301 651 - 5       cwn
ff
Phage tail assembly protein I Sputw3181_2457, YP_963835.1, gi|120599261, InterPro:IPR002173, InterPro:IPR010654, GeneID:4659601
2298 2840962 2840072 891 - 120         uncharacterized phage-encoded protein Sputw3181_2458, YP_963836.1, gi|120599262, GeneID:4659037
2299 2841633 2840959 675 - -4         Roi protein Sputw3181_2459, YP_963837.1, gi|120599263, InterPro:IPR010916, GeneID:4659015
2300 2841911 2842402 492 + 277         hypothetical protein Sputw3181_2460, YP_963838.1, gi|120599264, InterPro:IPR005569, GeneID:4658986
2301 2842959 2842441 519 - 38         lipoprotein, putative Sputw3181_2461, YP_963839.1, gi|120599265, InterPro:IPR000437, GeneID:4659240
2302 2843759 2843046 714 - 86     1: 1 cwn
ff
Phage tail assembly protein #Phage tail assembly protein K Sputw3181_2462, YP_963840.1, gi|120599266, InterPro:IPR000064, InterPro:IPR000555, GeneID:4659290
2303 2844536 2843811 726 - 51     1: 1 cwn
ff
Phage minor tail protein #Phage minor tail protein L Sputw3181_2463, YP_963841.1, gi|120599267, InterPro:IPR006487, GeneID:4659352
2304 2844816 2844529 288 - -8         FIG01061737: hypothetical protein Sputw3181_2464, YP_963842.1, gi|120599268, GeneID:4659415
2305 2846077 2844803 1275 - -14         DGR reverse transcriptase Sputw3181_2465, YP_963843.1, gi|120599269, InterPro:IPR000477, GeneID:4659465
2306 2847692 2846487 1206 - 409         hypothetical protein Sputw3181_2467, YP_963845.1, gi|120599271, GeneID:4659516

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|351745.7.peg.2300 hypothetical protein
MTKKNFPSDTLDKFMLRFPSGMREQIKEESNKNGRSMNAEIVHRLEVSFIADQNSSAANM
LHGDGIENLLTPTLPASIAGKIAKNNADSGIALASLFVDEINELINGAVVVGKRKIELDT
KKLTCSMPVTDAEIFSALKLVEKTFDDAGYLVKINDGNIIISF

MD5 = 81d365627e4d973c387e25d5c896cb30


  DNA Sequence

>fig|351745.7.peg.2300 hypothetical protein
atgacgaaaaaaaatttccctagtgataccttagataagtttatgttgcgcttccctagt
ggtatgcgtgagcaaattaaagaggaatccaacaaaaacggtcgttcaatgaacgctgaa
atcgtgcatcgattagaggtgagctttattgctgaccaaaattcatcggcagcaaacatg
ctgcacggagatggaattgaaaaccttttaacaccaacattgccagcatcaatagcaggg
aaaatagccaaaaacaatgcagactcaggtattgcattggcatcattatttgttgatgaa
attaacgaacttatcaatggcgcagtagtagttggtaagcgaaaaattgaacttgataca
aaaaagttaacctgctcaatgccagtgacggatgctgagatatttagcgctttaaaattg
gttgaaaagacttttgatgatgcgggttatcttgtaaaaattaacgatggcaacattata
atttcattttag


  DNA with Flanking Sequence

>fig|351745.7.peg.2300 hypothetical protein
tactatcacgcttgccttgctcgccagagaatacatagtgttttgattttgaatttttgc
ttaagctattgatattctcgaaaacccccattgggggaagttgaattaccccattttttg
ccaagcgttcgatagattgctttactttgtcatgacgagatccaactaggtcggatatct
ctccactggtcatggtcaattggttaccggtgattaatttcatgccgcctcctcttcctt
tcctatcaatccataagagcgctttaattgatagacaatctctgagtttagcgatcgcaa
ctgctgttcagacatctctttagcaatctggtgtacctctggtggtaaacgcaacattag
cctaagtggtgtcactgtattttttttcattttaatcccttatagtgtcgactcgacact
ataaatttaactgctagcaccaagtatgtcaactcgacactattctttttgtgtcgagtt
gacgctatgctattagaatcatgacgaaaaaaaatttccctagtgataccttagataagt
ttatgttgcgcttccctagtggtatgcgtgagcaaattaaagaggaatccaacaaaaacg
gtcgttcaatgaacgctgaaatcgtgcatcgattagaggtgagctttattgctgaccaaa
attcatcggcagcaaacatgctgcacggagatggaattgaaaaccttttaacaccaacat
tgccagcatcaatagcagggaaaatagccaaaaacaatgcagactcaggtattgcattgg
catcattatttgttgatgaaattaacgaacttatcaatggcgcagtagtagttggtaagc
gaaaaattgaacttgatacaaaaaagttaacctgctcaatgccagtgacggatgctgaga
tatttagcgctttaaaattggttgaaaagacttttgatgatgcgggttatcttgtaaaaa
ttaacgatggcaacattataatttcattttagttttaagataggccactttttggtggcc
tatttagcaactattgagacatgattacttcggcagtctcaccatcttgaaggtaaaccc
ttttcagcaataacccaccttgccgactgtagtcgccagtcatccaagtaattgaggttg
tcacgtaataagtaccatcggcaagatctttaaacttaaacctaccttctgaatcacaaa
ctgttgtttttgaatatttatcataatctgctgggcgtggtggcattttcttattaaata
tcccttcatctgccgcgaagccgcgctctgtagtaccaaagtatgctaaagcgcgttctg
tggcgtatgcagttgctgggactagctgaacagtcatgccagagcaggtaactatgccgc
cgccacgctggcgtagaaaagcattaccttcaatggagttgttacctttttccattaatt
ttttcgcttccacggcatcaaattgagcgtttaactttactgtctgtgatgc


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
GO:0003677       F:DNA binding
GO:0016564       F:transcription repressor activity
GO:0045449       P:regulation of transcription
fig|351745.9.peg.2575 Shewanella sp. W3-18-1 FIG   hypothetical protein
gb|ABM25284.1 Shewanella sp. W3-18-1     Arc domain protein DNA binding domain protein
gi|120559357 Shewanella sp. W3-18-1 NCBI   Arc domain protein DNA binding domain protein
gi|120599264 Shewanella sp. W3-18-1 NCBI   Arc domain-containing protein
img|639816551 Shewanella sp. W3-18-1 IMG   Arc domain protein DNA binding domain protein
kegg|shw:Sputw3181_2460 Shewanella sp. W3-18-1 KEGG   Arc domain-containing protein
ref|YP_963838.1 Shewanella sp. W3-18-1 RefSeq   Arc domain-containing protein
tr|A1RKT9 Shewanella sp. (strain W3-18-1) TrEMBL   Arc domain protein DNA binding domain protein


  Links to Related Entries in Other Sites

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  Functional Coupling

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  Attributes

Help on Attributes

Key
Link Explains Key
Value
PSORT::unknown unknown
similar_to_human no


  Protein Families

No protein families found

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