The SEED: an Annotation/Analysis Tool Provided by FIG
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Fid | Start | End | Size (nt) |
Gap | Find best clusters |
Pins | Fc-sc | SS | Ev | Function | Aliases | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
2291 | 2824789 | 2828175 | 3387 | + | ![]() |
6: 7 6 3 9 5 2 | ff icw(1) icw(2) isu isu isu |
Ribonuclease E (EC 3.1.26.12) | Sputw3181_2449, YP_963827.1, gi|120599253, InterPro:IPR003029, InterPro:IPR004659, GeneID:4658750 | |||
2292 | 2829093 | 2828884 | 210 | - | 708 | ![]() |
1: 4 | ff ilit(8022259) isu |
Cold shock protein CspE | Sputw3181_2450, YP_963828.1, gi|120599254, InterPro:IPR002059, InterPro:IPR011129, GeneID:4658771 | ||
2293 | 2830208 | 2829393 | 816 | - | 299 | ![]() |
ff isu |
Ribosomal RNA large subunit methyltransferase A (EC 2.1.1.51) | Sputw3181_2451, YP_963829.1, gi|120599255, InterPro:IPR013216, InterPro:IPR013217, GeneID:4658799 | |||
2294 | 2831049 | 2830249 | 801 | - | 40 | ![]() |
ff | FIG01057081: hypothetical protein | Sputw3181_2452, YP_963830.1, gi|120599256, GeneID:4658882 | |||
2295 | 2832768 | 2832058 | 711 | - | 1008 | ![]() |
hypothetical protein | Sputw3181_2454, YP_963832.1, gi|120599258, GeneID:4658923 | ||||
2296 | 2839295 | 2833092 | 6204 | - | 323 | ![]() |
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1: 8 | cwn | Phage tail fiber protein #Phage host specificity protein J | Sputw3181_2456, YP_963834.1, gi|120599260, InterPro:IPR000276, InterPro:IPR003610, InterPro:IPR003961, GeneID:4659013 | |
2297 | 2839951 | 2839301 | 651 | - | 5 | ![]() |
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5 | cwn ff |
Phage tail assembly protein I | Sputw3181_2457, YP_963835.1, gi|120599261, InterPro:IPR002173, InterPro:IPR010654, GeneID:4659601 | |
2298 | 2840962 | 2840072 | 891 | - | 120 | ![]() |
uncharacterized phage-encoded protein | Sputw3181_2458, YP_963836.1, gi|120599262, GeneID:4659037 | ||||
2299 | 2841633 | 2840959 | 675 | - | -4 | ![]() |
Roi protein | Sputw3181_2459, YP_963837.1, gi|120599263, InterPro:IPR010916, GeneID:4659015 | ||||
2300 | 2841911 | 2842402 | 492 | + | 277 | ![]() |
hypothetical protein | Sputw3181_2460, YP_963838.1, gi|120599264, InterPro:IPR005569, GeneID:4658986 | ||||
2301 | 2842959 | 2842441 | 519 | - | 38 | ![]() |
lipoprotein, putative | Sputw3181_2461, YP_963839.1, gi|120599265, InterPro:IPR000437, GeneID:4659240 | ||||
2302 | 2843759 | 2843046 | 714 | - | 86 | ![]() |
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7 | 1: 1 | cwn ff |
Phage tail assembly protein #Phage tail assembly protein K | Sputw3181_2462, YP_963840.1, gi|120599266, InterPro:IPR000064, InterPro:IPR000555, GeneID:4659290 |
2303 | 2844536 | 2843811 | 726 | - | 51 | ![]() |
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6 | 1: 1 | cwn ff |
Phage minor tail protein #Phage minor tail protein L | Sputw3181_2463, YP_963841.1, gi|120599267, InterPro:IPR006487, GeneID:4659352 |
2304 | 2844816 | 2844529 | 288 | - | -8 | ![]() |
FIG01061737: hypothetical protein | Sputw3181_2464, YP_963842.1, gi|120599268, GeneID:4659415 | ||||
2305 | 2846077 | 2844803 | 1275 | - | -14 | ![]() |
DGR reverse transcriptase | Sputw3181_2465, YP_963843.1, gi|120599269, InterPro:IPR000477, GeneID:4659465 |
Annotation History / View All Related Annotations | Help on Annotations |
Subsystem | Curator | Role |
---|---|---|
Phage_tail_fiber_proteins | RamyA | Phage tail fiber protein |
Score | Peg | Function |
---|---|---|
5 | fig|351745.7.peg.2297 | Phage tail assembly protein I |
7 | fig|351745.7.peg.2302 | Phage tail assembly protein #Phage tail assembly protein K |
6 | fig|351745.7.peg.2303 | Phage minor tail protein #Phage minor tail protein L |
Key Link Explains Key |
Value |
---|---|
evidence_code | cwn |
PSORT::unknown | unknown |
PSORT_score::Extracellular | 4.13 |
PSORT_score::OuterMembrane | 5.87 |
similar_to_human | no |
Compare Regions |
| Psi-Blast | TMpred | TMHMM | Gram negative PSORT | Gram negative SignalP | Gram positive PSORT | Gram positive SignalP | LipoP | Radar | PPSearch | Gram negative CELLO | Gram positive CELLO | ProDom | PDB | RNAFold |
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