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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
The SEED


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Protein fig|324831.13.peg.641: Lactobacillus gasseri ATCC 33323

This feature in The SEED Viewer

NCBI Taxonomy Id: 324831

Current Assignment: Holliday junction resolvase
Translate Function Assignments



Context on contig NC_008530 from base 645341 to 656526 (11186 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
630 645341 646201 861 +           FIG00746299: hypothetical protein locus|LGAS_0643, protein_id|YP_814475.1, gi|116629303, geneID|4440166
631 646207 647019 813 + 5         FIG00751630: hypothetical protein locus|LGAS_0644, protein_id|YP_814476.1, gi|116629304, geneID|4440167
632 647029 647952 924 + 9         FIG00744143: hypothetical protein locus|LGAS_0645, protein_id|YP_814477.1, gi|116629305, geneID|4440168
633 647958 648263 306 + 5         Transcriptional regulator, xre family locus|LGAS_0646, protein_id|YP_814478.1, gi|116629306, geneID|4440169
634 648256 649041 786 + -8         Phage antirepressor protein locus|LGAS_0647, protein_id|YP_814479.1, gi|116629307, geneID|4440170
635 649056 649241 186 + 14         FIG00749519: hypothetical protein locus|LGAS_0648, protein_id|YP_814480.1, gi|116629308, geneID|4440171
636 649251 649463 213 + 9         FIG00745651: hypothetical protein locus|LGAS_0649, protein_id|YP_814481.1, gi|116629309, geneID|4440172
637 649656 649919 264 + 192         hypothetical protein locus|LGAS_0650, protein_id|YP_814482.1, gi|116629310, geneID|4440173
638 649916 650116 201 + -4         hypothetical protein  
639 650113 650469 357 + -4         FIG00746627: hypothetical protein locus|LGAS_0651, protein_id|YP_814483.1, gi|116629311, geneID|4440141
640 650539 650793 255 + 69         hypothetical protein locus|LGAS_0652, protein_id|YP_814484.1, gi|116629312, geneID|4440142
641 650806 651267 462 + 12         Holliday junction resolvase locus|LGAS_0653, protein_id|YP_814485.1, gi|116629313, geneID|4440143
642 651268 651489 222 + 0         hypothetical protein locus|LGAS_0654, protein_id|YP_814486.1, gi|116629314, geneID|4440144
643 651559 651690 132 + 69         hypothetical protein locus|LGAS_0655, protein_id|YP_814487.1, gi|116629315, geneID|4440145
644 651680 651970 291 + -11         FIG00751351: hypothetical protein locus|LGAS_0656, protein_id|YP_814488.1, gi|116629316, geneID|4440146
645 651973 652191 219 + 2         FIG00754532: hypothetical protein locus|LGAS_0657, protein_id|YP_814489.1, gi|116629317, geneID|4440147
646 652178 652345 168 + -14         hypothetical protein locus|LGAS_0658, protein_id|YP_814490.1, gi|116629318, geneID|4440148
647 652375 652905 531 + 29         FIG00747662: hypothetical protein locus|LGAS_0659, protein_id|YP_814491.1, gi|116629319, geneID|4440149
rna.19 653635 653707 73 + 729         tRNA-Gln-TTG  
648 653763 654047 285 + 55     4: 2 1 3 4   Chromosome (plasmid) partitioning protein ParB locus|LGAS_0661, protein_id|YP_814492.1, gi|116629320, geneID|4440151
rna.20 654299 654380 82 + 251         tRNA-Pseudo-???  
649 654488 655105 618 + 107         hypothetical protein locus|LGAS_0663, protein_id|YP_814493.1, gi|116629321, geneID|4440153
650 655288 655944 657 + 182         Phage terminase, large subunit locus|LGAS_0664, protein_id|YP_814494.1, gi|116629322, geneID|4440154
651 656005 656526 522 + 60         Phage terminase, small subunit locus|LGAS_0665, protein_id|YP_814495.1, gi|116629323, geneID|4440155

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|324831.13.peg.641 Holliday junction resolvase
MRVNFTIEGPPIGKARPRVTRTVTYTPAKTARYEDLVRYTAINSFKGIFDKDEPLDVKIM
AYFEVPKSLSKKRKALCLANQELPTKKPDADNVGKIIMDGMNPKMRRDKRLHKMVEVMRG
VYHDDKQVTTLLVKKRYAERARVDVRIKRDMGD

MD5 = 6038047b223f2b04d8011bd33f2dcaaa


  DNA Sequence

>fig|324831.13.peg.641 Holliday junction resolvase
atgagagttaactttacgattgaaggaccgccgattggtaaggcaagaccgagagttact
aggacggtaacttacacgccagctaagactgcacgatatgaggatttagtcaggtataca
gcgattaatagtttcaaaggaatatttgataaagatgaacctttagacgttaagatcatg
gcatattttgaagtaccgaagagtttaagcaagaaacgtaaggctttatgtttagctaac
caagaactgccaactaagaagcctgatgctgataacgtgggcaaaatcatcatggacggc
atgaacccaaagatgaggcgtgataaacgacttcacaaaatggttgaagttatgagaggt
gtttatcatgacgacaagcaagtaacaaccttgttagtcaaaaagaggtatgccgagcgt
gcaagagttgacgtgaggattaagagagatatgggtgattag


  DNA with Flanking Sequence

>fig|324831.13.peg.641 Holliday junction resolvase
ttttgttggatattgatgatgaaaaggccctgaaagaggactgggaacttggagctgcaa
gtgactatatgccagttagcgataagtatcgagaatggttgcaagatccaattcttcacg
atattagacaagttgcagttatggtggggttcatttatgcctgattgggtttttgcagca
gcattcttaattctgctagctatagtaattttggtagtaggagcgatgtaaatatgattt
ttaaattggaagaagatttaccttttgatatacagggaaatttaaatgaatactggttaa
atatcttggaaaggaataatttcaaagtaattgaaattaataaaaaaacacgtgaacttg
agtaccgaatagaacttatgagtcttgatgatctacggaaattacagaaaaaaatcggat
taaacttgacaatttcgtttgaagacgatgaaggcacaaacgaagttgatgggattatta
caatttaggaaattaagtatatgagagttaactttacgattgaaggaccgccgattggta
aggcaagaccgagagttactaggacggtaacttacacgccagctaagactgcacgatatg
aggatttagtcaggtatacagcgattaatagtttcaaaggaatatttgataaagatgaac
ctttagacgttaagatcatggcatattttgaagtaccgaagagtttaagcaagaaacgta
aggctttatgtttagctaaccaagaactgccaactaagaagcctgatgctgataacgtgg
gcaaaatcatcatggacggcatgaacccaaagatgaggcgtgataaacgacttcacaaaa
tggttgaagttatgagaggtgtttatcatgacgacaagcaagtaacaaccttgttagtca
aaaagaggtatgccgagcgtgcaagagttgacgtgaggattaagagagatatgggtgatt
agatgcaaaaaattgatttgagtctggtaagtaaatttgtagatgcaagcatcgctaacg
ataagagattggctttgaagttagcaaaaaagattgctgaacagcataactgttctttga
gttttgaacttgacactttagactggagcgcaaattggttgaaaagtgatgaaagagtga
ctactcaatctatggttcgggagctgagaaagtatgaagcatagtgcagaattaatcagt
atagcagggatgctaatttgcttaggtgctgtcggatttgtggtgttttgtctatgagca
ataatttgaagtatcaaaaaggcaagtggtatcacgtacaagaagacggttcacttaagc
cagtagattatgacaaagaagttgaagagtattacaagaaatggagagataactatggca
attgagttaaagattggggctagaggaacgagagaagattttgaagacacatatactaga
agtttcttagaagataacggtc


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
GO:0000287       F:magnesium ion binding
GO:0006281       P:DNA repair
GO:0006310       P:DNA recombination
fig|324831.10.peg.561 Lactobacillus gasseri ATCC 33323 FIG   Holliday junction resolvase
fig|324831.10.peg.612 Lactobacillus gasseri ATCC 33323 FIG   Holliday junction resolvase
fig|324831.13.peg.580 Lactobacillus gasseri ATCC 33323 FIG   Holliday junction resolvase
gb|ABJ59987.1 Lactobacillus gasseri ATCC 33323     Holliday junction resolvase
gb|ABJ60047.1 Lactobacillus gasseri ATCC 33323     Holliday junction resolvase
gi|116094835 Lactobacillus gasseri ATCC 33323 NCBI   Holliday junction resolvase
gi|116094895 Lactobacillus gasseri ATCC 33323 NCBI   Holliday junction resolvase
gi|116629253 Lactobacillus gasseri ATCC 33323 NCBI   Holliday junction resolvase
gi|116629313 Lactobacillus gasseri ATCC 33323 NCBI   Holliday junction resolvase
img|639672448 Lactobacillus gasseri ATCC 33323 IMG   Holliday junction resolvase
img|639672510 Lactobacillus gasseri ATCC 33323 IMG   Holliday junction resolvase
kegg|lga:LGAS_0591 Lactobacillus gasseri ATCC 33323 KEGG   Holliday junction resolvase
kegg|lga:LGAS_0653 Lactobacillus gasseri ATCC 33323 KEGG   Holliday junction resolvase
ref|YP_814425.1 Lactobacillus gasseri ATCC 33323 RefSeq   Holliday junction resolvase
ref|YP_814485.1 Lactobacillus gasseri ATCC 33323 RefSeq   Holliday junction resolvase
tr|Q044S5 Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) TrEMBL   Holliday junction resolvase


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  Functional Coupling

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  Attributes

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  Protein Families

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