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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|324831.13.peg.633: Lactobacillus gasseri ATCC 33323

This feature in The SEED Viewer

NCBI Taxonomy Id: 324831

Current Assignment: Transcriptional regulator, xre family
Translate Function Assignments



Context on contig NC_008530 from base 642869 to 652905 (10037 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
623 643348 642869 480 -           FIG00742762: hypothetical protein locus|LGAS_0636, protein_id|YP_814468.1, gi|116629296, geneID|4440159
624 643664 643326 339 - -23         Cro-like phage transcriptional repressor protein locus|LGAS_0637, protein_id|YP_814469.1, gi|116629297, geneID|4440160
625 643818 644042 225 + 153         XRE family transcriptional regulator locus|LGAS_0638, protein_id|YP_814470.1, gi|116629298, geneID|4440161
626 644075 644410 336 + 32         Phage related protein locus|LGAS_0639, protein_id|YP_814471.1, gi|116629299, geneID|4440162
627 644415 644693 279 + 4         FIG00744823: hypothetical protein locus|LGAS_0640, protein_id|YP_814472.1, gi|116629300, geneID|4440163
628 644811 644957 147 + 117         putative recombination protein locus|LGAS_0641, protein_id|YP_814473.1, gi|116629301, geneID|4440164
629 645060 645341 282 + 102         FIG00743546: hypothetical protein locus|LGAS_0642, protein_id|YP_814474.1, gi|116629302, geneID|4440165
630 645341 646201 861 + -1         FIG00746299: hypothetical protein locus|LGAS_0643, protein_id|YP_814475.1, gi|116629303, geneID|4440166
631 646207 647019 813 + 5         FIG00751630: hypothetical protein locus|LGAS_0644, protein_id|YP_814476.1, gi|116629304, geneID|4440167
632 647029 647952 924 + 9         FIG00744143: hypothetical protein locus|LGAS_0645, protein_id|YP_814477.1, gi|116629305, geneID|4440168
633 647958 648263 306 + 5         Transcriptional regulator, xre family locus|LGAS_0646, protein_id|YP_814478.1, gi|116629306, geneID|4440169
634 648256 649041 786 + -8         Phage antirepressor protein locus|LGAS_0647, protein_id|YP_814479.1, gi|116629307, geneID|4440170
635 649056 649241 186 + 14         FIG00749519: hypothetical protein locus|LGAS_0648, protein_id|YP_814480.1, gi|116629308, geneID|4440171
636 649251 649463 213 + 9         FIG00745651: hypothetical protein locus|LGAS_0649, protein_id|YP_814481.1, gi|116629309, geneID|4440172
637 649656 649919 264 + 192         hypothetical protein locus|LGAS_0650, protein_id|YP_814482.1, gi|116629310, geneID|4440173
638 649916 650116 201 + -4         hypothetical protein  
639 650113 650469 357 + -4         FIG00746627: hypothetical protein locus|LGAS_0651, protein_id|YP_814483.1, gi|116629311, geneID|4440141
640 650539 650793 255 + 69         hypothetical protein locus|LGAS_0652, protein_id|YP_814484.1, gi|116629312, geneID|4440142
641 650806 651267 462 + 12         Holliday junction resolvase locus|LGAS_0653, protein_id|YP_814485.1, gi|116629313, geneID|4440143
642 651268 651489 222 + 0         hypothetical protein locus|LGAS_0654, protein_id|YP_814486.1, gi|116629314, geneID|4440144
643 651559 651690 132 + 69         hypothetical protein locus|LGAS_0655, protein_id|YP_814487.1, gi|116629315, geneID|4440145
644 651680 651970 291 + -11         FIG00751351: hypothetical protein locus|LGAS_0656, protein_id|YP_814488.1, gi|116629316, geneID|4440146
645 651973 652191 219 + 2         FIG00754532: hypothetical protein locus|LGAS_0657, protein_id|YP_814489.1, gi|116629317, geneID|4440147
646 652178 652345 168 + -14         hypothetical protein locus|LGAS_0658, protein_id|YP_814490.1, gi|116629318, geneID|4440148
647 652375 652905 531 + 29         FIG00747662: hypothetical protein locus|LGAS_0659, protein_id|YP_814491.1, gi|116629319, geneID|4440149

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|324831.13.peg.633 Transcriptional regulator, xre family
MQNRLKKLRLEKRLTLADIQAKTNIDFRILENFEKGLENGIHNSLAIWQKLANFLEVPIE
YLMGLNDDSKTLTVNDLNPAKEDAYERITDMLCEDEDDEDE

MD5 = 3a06eae08b06d61eb0348bc53f33af61


  DNA Sequence

>fig|324831.13.peg.633 Transcriptional regulator, xre family
atgcaaaataggctaaagaaattgagattggaaaagagattaactcttgccgatatacaa
gctaaaaccaacattgattttagaattttagaaaatttcgaaaaaggattggaaaatgga
atacataactctttagcaatttggcaaaagttggctaactttttagaagttccaattgag
tacctaatgggattaaacgacgatagcaagacattaactgttaacgacttgaacccagcc
aaagaagatgcttacgagcgtattacggatatgctatgcgaagatgaggacgatgaagat
gaataa


  DNA with Flanking Sequence

>fig|324831.13.peg.633 Transcriptional regulator, xre family
accgaagataagttaagtaaagataagttaagtaaagataataatatatataaattgtcg
agttcagagaacatcgacaccgatccagaacaaaaatctcaaaaaataccttacgaaaaa
attatcgattacttaaacagaaagactaattcacattatcgtccaacttctaaagctact
aggcgactaattaaagctagatacaacgagggctttactgatattgactttaagtctgtt
atagacaagaagtgtgctgaatggctacaagatggcaacatggttcagtacttaagacca
gaaactctttttggaactaagtttgaagcatatctaaatcagccagatacaggacctatt
ccacgaaacaattttagaaataagccagttcgaagggctacaaactgggataaggttcag
caacaacaatcgcaaacaacactacaaatgacgcgagaagaacgtaacgcaattttcaga
gagtacgggaggtaaccaccatgcaaaataggctaaagaaattgagattggaaaagagat
taactcttgccgatatacaagctaaaaccaacattgattttagaattttagaaaatttcg
aaaaaggattggaaaatggaatacataactctttagcaatttggcaaaagttggctaact
ttttagaagttccaattgagtacctaatgggattaaacgacgatagcaagacattaactg
ttaacgacttgaacccagccaaagaagatgcttacgagcgtattacggatatgctatgcg
aagatgaggacgatgaagatgaataacgaattaatcaaagtaacggtcaagaatgaccag
caactagttagtgctagagatttatataagggattaggtatcaagcgaagattttccgct
tggtgggaacagaacagcaatgactttaaagaaaatagtgatttccaacgtgtacttata
agtacacctagagaaaaccgcggtagcattgagcttcaggactatgcactcacaattgat
atggctaagcagctgtgtcttttgagccgtacctcaaagggcaaggaatatcgagaatac
ttaatcgaagttgaaaagaagtggaataatccggacatgattatgcaacgcgccttaact
atcgctaacaatcgggtgaagttgctggaaactgaaaagagagaactaaaagaaacaaat
gctagacaagcagctaagattgctaaagatgctgacgatgtggtttttgccaaggctatt
agatatagccatcatgcaatccctgttggcgaattagctgaaattt


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
GO:0043565       F:sequence-specific DNA binding
fig|324831.10.peg.556 Lactobacillus gasseri ATCC 33323 FIG   Transcriptional regulator, xre family
fig|324831.10.peg.607 Lactobacillus gasseri ATCC 33323 FIG   Transcriptional regulator, xre family
fig|324831.13.peg.572 Lactobacillus gasseri ATCC 33323 FIG   Transcriptional regulator, xre family
gb|ABJ59980.1 Lactobacillus gasseri ATCC 33323     Transcriptional regulator, xre family
gb|ABJ60040.1 Lactobacillus gasseri ATCC 33323     Transcriptional regulator, xre family
gi|116094828 Lactobacillus gasseri ATCC 33323 NCBI   Transcriptional regulator, xre family
gi|116094888 Lactobacillus gasseri ATCC 33323 NCBI   Transcriptional regulator, xre family
gi|116629246 Lactobacillus gasseri ATCC 33323 NCBI   XRE family transcriptional regulator
gi|116629306 Lactobacillus gasseri ATCC 33323 NCBI   XRE family transcriptional regulator
img|639672441 Lactobacillus gasseri ATCC 33323 IMG   Transcriptional regulator, xre family
img|639672503 Lactobacillus gasseri ATCC 33323 IMG   Transcriptional regulator, xre family
kegg|lga:LGAS_0584 Lactobacillus gasseri ATCC 33323 KEGG   XRE family transcriptional regulator
kegg|lga:LGAS_0646 Lactobacillus gasseri ATCC 33323 KEGG   XRE family transcriptional regulator
ref|YP_814418.1 Lactobacillus gasseri ATCC 33323 RefSeq   XRE family transcriptional regulator
ref|YP_814478.1 Lactobacillus gasseri ATCC 33323 RefSeq   XRE family transcriptional regulator
tr|Q044T2 Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) TrEMBL   Transcriptional regulator, xre family


  Links to Related Entries in Other Sites

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  Functional Coupling

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  Attributes

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  Protein Families

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