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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
The SEED


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Protein fig|324831.10.peg.612: Lactobacillus gasseri ATCC 33323

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NCBI Taxonomy Id: 324831

Current Assignment: Holliday junction resolvase
Translate Function Assignments



Context on contig NC_008530 from base 645341 to 656526 (11186 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
604 645341 646201 861 +           FIG00746299: hypothetical protein LGAS_0643, YP_814475.1, gi|116629303, GeneID:4440166
605 646207 647019 813 + 5         FIG00751630: hypothetical protein LGAS_0644, YP_814476.1, gi|116629304, GeneID:4440167
606 647029 647952 924 + 9         FIG00744143: hypothetical protein LGAS_0645, YP_814477.1, gi|116629305, GeneID:4440168
607 647958 648263 306 + 5         Transcriptional regulator, xre family LGAS_0646, YP_814478.1, gi|116629306, GeneID:4440169
608 648205 649041 837 + -59     1: 1 cwh Phage antirepressor protein LGAS_0647, YP_814479.1, gi|116629307, GeneID:4440170
609 649056 649241 186 + 14         FIG00749519: hypothetical protein LGAS_0648, YP_814480.1, gi|116629308, GeneID:4440171
610 649251 649463 213 + 9         FIG00745651: hypothetical protein LGAS_0649, YP_814481.1, gi|116629309, GeneID:4440172
611 650098 650469 372 + 634         FIG00746627: hypothetical protein LGAS_0651, YP_814483.1, gi|116629311, GeneID:4440141
612 650806 651267 462 + 336         Holliday junction resolvase LGAS_0653, YP_814485.1, gi|116629313, GeneID:4440143
613 651268 651489 222 + 0         hypothetical protein LGAS_0654, YP_814486.1, gi|116629314, GeneID:4440144
614 651635 651970 336 + 145         FIG00751351: hypothetical protein LGAS_0656, YP_814488.1, gi|116629316, GeneID:4440146
615 652375 652905 531 + 404         FIG00747662: hypothetical protein LGAS_0659, YP_814491.1, gi|116629319, GeneID:4440149
rna.19 653635 653707 73 + 729         tRNA-Gln-TTG tRNA-Gln-TTG
616 653763 654047 285 + 55         Chromosome (plasmid) partitioning protein ParB LGAS_0661, YP_814492.1, gi|116629320, GeneID:4440151
rna.20 654299 654380 82 + 251         tRNA-Pseudo-??? tRNA-Pseudo-???
617 654488 655105 618 + 107         hypothetical protein LGAS_0663, YP_814493.1, gi|116629321, GeneID:4440153
618 655288 655944 657 + 182         Phage terminase, large subunit LGAS_0664, YP_814494.1, gi|116629322, GeneID:4440154
619 656173 656526 354 + 228         Phage terminase, small subunit LGAS_0665, YP_814495.1, gi|116629323, GeneID:4440155

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|324831.10.peg.612 Holliday junction resolvase
MRVNFTIEGPPIGKARPRVTRTVTYTPAKTARYEDLVRYTAINSFKGIFDKDEPLDVKIM
AYFEVPKSLSKKRKALCLANQELPTKKPDADNVGKIIMDGMNPKMRRDKRLHKMVEVMRG
VYHDDKQVTTLLVKKRYAERARVDVRIKRDMGD

MD5 = 6038047b223f2b04d8011bd33f2dcaaa


  DNA Sequence

>fig|324831.10.peg.612 Holliday junction resolvase
atgagagttaactttacgattgaaggaccgccgattggtaaggcaagaccgagagttact
aggacggtaacttacacgccagctaagactgcacgatatgaggatttagtcaggtataca
gcgattaatagtttcaaaggaatatttgataaagatgaacctttagacgttaagatcatg
gcatattttgaagtaccgaagagtttaagcaagaaacgtaaggctttatgtttagctaac
caagaactgccaactaagaagcctgatgctgataacgtgggcaaaatcatcatggacggc
atgaacccaaagatgaggcgtgataaacgacttcacaaaatggttgaagttatgagaggt
gtttatcatgacgacaagcaagtaacaaccttgttagtcaaaaagaggtatgccgagcgt
gcaagagttgacgtgaggattaagagagatatgggtgattag


  DNA with Flanking Sequence

>fig|324831.10.peg.612 Holliday junction resolvase
ttttgttggatattgatgatgaaaaggccctgaaagaggactgggaacttggagctgcaa
gtgactatatgccagttagcgataagtatcgagaatggttgcaagatccaattcttcacg
atattagacaagttgcagttatggtggggttcatttatgcctgattgggtttttgcagca
gcattcttaattctgctagctatagtaattttggtagtaggagcgatgtaaatatgattt
ttaaattggaagaagatttaccttttgatatacagggaaatttaaatgaatactggttaa
atatcttggaaaggaataatttcaaagtaattgaaattaataaaaaaacacgtgaacttg
agtaccgaatagaacttatgagtcttgatgatctacggaaattacagaaaaaaatcggat
taaacttgacaatttcgtttgaagacgatgaaggcacaaacgaagttgatgggattatta
caatttaggaaattaagtatatgagagttaactttacgattgaaggaccgccgattggta
aggcaagaccgagagttactaggacggtaacttacacgccagctaagactgcacgatatg
aggatttagtcaggtatacagcgattaatagtttcaaaggaatatttgataaagatgaac
ctttagacgttaagatcatggcatattttgaagtaccgaagagtttaagcaagaaacgta
aggctttatgtttagctaaccaagaactgccaactaagaagcctgatgctgataacgtgg
gcaaaatcatcatggacggcatgaacccaaagatgaggcgtgataaacgacttcacaaaa
tggttgaagttatgagaggtgtttatcatgacgacaagcaagtaacaaccttgttagtca
aaaagaggtatgccgagcgtgcaagagttgacgtgaggattaagagagatatgggtgatt
agatgcaaaaaattgatttgagtctggtaagtaaatttgtagatgcaagcatcgctaacg
ataagagattggctttgaagttagcaaaaaagattgctgaacagcataactgttctttga
gttttgaacttgacactttagactggagcgcaaattggttgaaaagtgatgaaagagtga
ctactcaatctatggttcgggagctgagaaagtatgaagcatagtgcagaattaatcagt
atagcagggatgctaatttgcttaggtgctgtcggatttgtggtgttttgtctatgagca
ataatttgaagtatcaaaaaggcaagtggtatcacgtacaagaagacggttcacttaagc
cagtagattatgacaaagaagttgaagagtattacaagaaatggagagataactatggca
attgagttaaagattggggctagaggaacgagagaagattttgaagacacatatactaga
agtttcttagaagataacggtc


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
GO:0000287       F:magnesium ion binding
GO:0006281       P:DNA repair
GO:0006310       P:DNA recombination
fig|324831.10.peg.561 Lactobacillus gasseri ATCC 33323 FIG   Holliday junction resolvase
fig|324831.13.peg.580 Lactobacillus gasseri ATCC 33323 FIG   Holliday junction resolvase
fig|324831.13.peg.641 Lactobacillus gasseri ATCC 33323 FIG   Holliday junction resolvase
gb|ABJ59987.1 Lactobacillus gasseri ATCC 33323     Holliday junction resolvase
gb|ABJ60047.1 Lactobacillus gasseri ATCC 33323     Holliday junction resolvase
gi|116094835 Lactobacillus gasseri ATCC 33323 NCBI   Holliday junction resolvase
gi|116094895 Lactobacillus gasseri ATCC 33323 NCBI   Holliday junction resolvase
gi|116629253 Lactobacillus gasseri ATCC 33323 NCBI   Holliday junction resolvase
gi|116629313 Lactobacillus gasseri ATCC 33323 NCBI   Holliday junction resolvase
img|639672448 Lactobacillus gasseri ATCC 33323 IMG   Holliday junction resolvase
img|639672510 Lactobacillus gasseri ATCC 33323 IMG   Holliday junction resolvase
kegg|lga:LGAS_0591 Lactobacillus gasseri ATCC 33323 KEGG   Holliday junction resolvase
kegg|lga:LGAS_0653 Lactobacillus gasseri ATCC 33323 KEGG   Holliday junction resolvase
ref|YP_814425.1 Lactobacillus gasseri ATCC 33323 RefSeq   Holliday junction resolvase
ref|YP_814485.1 Lactobacillus gasseri ATCC 33323 RefSeq   Holliday junction resolvase
tr|Q044S5 Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) TrEMBL   Holliday junction resolvase


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  Functional Coupling

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  Attributes

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  Protein Families

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