The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
The SEED


FIG search

Protein fig|324831.10.peg.605: Lactobacillus gasseri ATCC 33323

This feature in The SEED Viewer

NCBI Taxonomy Id: 324831

Current Assignment: FIG00751630: hypothetical protein
Translate Function Assignments



Context on contig NC_008530 from base 640849 to 651970 (11122 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
595 641967 640849 1119 -         cwn Mobile element protein LGAS_0634, YP_814466.1, gi|116629294, GeneID:4440157
596 642116 641970 147 - 2         FIG00745371: hypothetical protein  
597 642804 642181 624 - 64         lipoprotein, putative LGAS_0635, YP_814467.1, gi|116629295, GeneID:4440158
598 643351 642869 483 - 64         FIG00742762: hypothetical protein LGAS_0636, YP_814468.1, gi|116629296, GeneID:4440159
599 643664 643326 339 - -26       cwn Cro-like phage transcriptional repressor protein LGAS_0637, YP_814469.1, gi|116629297, GeneID:4440160
600 643818 644042 225 + 153         XRE family transcriptional regulator LGAS_0638, YP_814470.1, gi|116629298, GeneID:4440161
601 644075 644410 336 + 32         Phage related protein LGAS_0639, YP_814471.1, gi|116629299, GeneID:4440162
602 644379 644693 315 + -32         FIG00744823: hypothetical protein LGAS_0640, YP_814472.1, gi|116629300, GeneID:4440163
603 645009 645341 333 + 315         FIG00743546: hypothetical protein LGAS_0642, YP_814474.1, gi|116629302, GeneID:4440165
604 645341 646201 861 + -1         FIG00746299: hypothetical protein LGAS_0643, YP_814475.1, gi|116629303, GeneID:4440166
605 646207 647019 813 + 5         FIG00751630: hypothetical protein LGAS_0644, YP_814476.1, gi|116629304, GeneID:4440167
606 647029 647952 924 + 9         FIG00744143: hypothetical protein LGAS_0645, YP_814477.1, gi|116629305, GeneID:4440168
607 647958 648263 306 + 5         Transcriptional regulator, xre family LGAS_0646, YP_814478.1, gi|116629306, GeneID:4440169
608 648205 649041 837 + -59     1: 1 cwh Phage antirepressor protein LGAS_0647, YP_814479.1, gi|116629307, GeneID:4440170
609 649056 649241 186 + 14         FIG00749519: hypothetical protein LGAS_0648, YP_814480.1, gi|116629308, GeneID:4440171
610 649251 649463 213 + 9         FIG00745651: hypothetical protein LGAS_0649, YP_814481.1, gi|116629309, GeneID:4440172
611 650098 650469 372 + 634         FIG00746627: hypothetical protein LGAS_0651, YP_814483.1, gi|116629311, GeneID:4440141
612 650806 651267 462 + 336         Holliday junction resolvase LGAS_0653, YP_814485.1, gi|116629313, GeneID:4440143
613 651268 651489 222 + 0         hypothetical protein LGAS_0654, YP_814486.1, gi|116629314, GeneID:4440144
614 651635 651970 336 + 145         FIG00751351: hypothetical protein LGAS_0656, YP_814488.1, gi|116629316, GeneID:4440146

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|324831.10.peg.605 FIG00751630: hypothetical protein
MEFVGEVKDRASWALHFAQVKANIKQPQRSHKVQVSGKTKTGKPYTYEYKYADLADVDKS
VMEATKKVVDDKGNVQFTYFFDVNNTDQGVDVQTILVDVSGFYAVTNKVWFKNFNVGDAQ
KTASLISYAKRYSLSAAFGIASEDDDDAQDVKNIEEPKVLSKQELDNYTVYYNGIKANLA
ELYQEAVDGIADAQDWIRGSHTPQDAQAIYQLNQSYKRREKDKQEALKKAEEEAKKEEKL
REAQRSEEKPKQEDVSNLFGTLPADGEYIK

MD5 = 0b47493bde97e1540019a328f82426e8


  DNA Sequence

>fig|324831.10.peg.605 FIG00751630: hypothetical protein
atggagtttgtcggagaagtaaaagatcgtgcaagttgggcattacacttcgcacaagtt
aaagctaatatcaaacaaccacaaagaagtcataaggttcaagtatcaggaaaaactaaa
actggtaagccttatacgtatgaatacaagtatgcagacttagcagacgttgataaatca
gttatggaagccactaaaaaagttgttgatgataaaggcaatgtacagtttacttacttt
tttgatgttaacaacacggatcaaggtgtagatgtacaaaccattctagtagatgtatct
ggcttttatgctgtcacaaataaagtttggtttaaaaactttaatgtgggagacgcacag
aaaacagctagcttaatcagttatgctaagcgttattccttaagtgcagcttttggaatt
gctagtgaagatgacgatgatgcgcaggacgtaaaaaatattgaagagcctaaagtctta
tctaaacaagagttagataattacacggtttactataacggaattaaagctaatctagct
gaattatatcaagaagctgtagatggaattgctgatgctcaagattggattagaggatca
catactccgcaggacgcccaagccatttatcagttaaatcaaagttacaaacggcgtgaa
aaagataagcaagaggctttaaagaaagccgaagaggaagctaaaaaagaagaaaaatta
agagaagcacagcgaagtgaagagaagccaaaacaagaagatgtatccaatttattcgga
acattacctgctgacggggaatacatcaaatag


  DNA with Flanking Sequence

>fig|324831.10.peg.605 FIG00751630: hypothetical protein
gaagctaatattaagcacatcgacaaaatggctgaaaagtttggtcttactcatgaagat
atagcctatgacgctaaatgggataacaagtctaataactggaagaagattgaagaaaac
atcaatcaacttttagaaaaggcagcacaagaacgtgatttcaaaaatgaaaaaatcact
ttaattacagaagctgctgaaaaagagcaaattttaccagatagttatatcaatttgatt
gatgatctaactatttctgaaatattagctcgaattaagaatgatggaaaacgtcaaaga
gaactaagtttaaaaaaagatgagcctatcaagcaacaagttaaaggcaattcagtaatt
gatacgactactggagaagtagttggcgaaacaaaagttgcttatctaaaaattactgga
tcagatgaacagatgaaaaagttagtcgaatttataaaaagtcaaggattaaaagtagaa
ccaattgagaggtaataaagatggagtttgtcggagaagtaaaagatcgtgcaagttggg
cattacacttcgcacaagttaaagctaatatcaaacaaccacaaagaagtcataaggttc
aagtatcaggaaaaactaaaactggtaagccttatacgtatgaatacaagtatgcagact
tagcagacgttgataaatcagttatggaagccactaaaaaagttgttgatgataaaggca
atgtacagtttacttacttttttgatgttaacaacacggatcaaggtgtagatgtacaaa
ccattctagtagatgtatctggcttttatgctgtcacaaataaagtttggtttaaaaact
ttaatgtgggagacgcacagaaaacagctagcttaatcagttatgctaagcgttattcct
taagtgcagcttttggaattgctagtgaagatgacgatgatgcgcaggacgtaaaaaata
ttgaagagcctaaagtcttatctaaacaagagttagataattacacggtttactataacg
gaattaaagctaatctagctgaattatatcaagaagctgtagatggaattgctgatgctc
aagattggattagaggatcacatactccgcaggacgcccaagccatttatcagttaaatc
aaagttacaaacggcgtgaaaaagataagcaagaggctttaaagaaagccgaagaggaag
ctaaaaaagaagaaaaattaagagaagcacagcgaagtgaagagaagccaaaacaagaag
atgtatccaatttattcggaacattacctgctgacggggaatacatcaaataggaggtca
aaatgggtagaagaatgtacagcgataagattgttgaaactgataaattcttagatatgc
ccgtatctagtcaaaatctatattggcacttatgtatgcacgcagatgatgatggatttt
taggaaatcctaaaactatagttagatcaattggtgcacaacaagacgatttaaaaattc
tagttgaaaagggatacgtaattgtatttgaagatggagtaattgctataacagactggt
tcgttcataactacattcctaaagatcgctatcatgaaacagtttataaagaagataaaa
aacaacttgagctgtccgaaaccaagcaataccgccttgttacaagaaagccgattgttc
aggatacaaaaagtaaacaagttgtagacaacatggatacatcttgtatacaagatgata
acaaagtgtataccgaagataagttaagtaaagataagttaagtaaagataataatatat
ataaattgtcgag


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
fig|324831.10.peg.554 Lactobacillus gasseri ATCC 33323 FIG   FIG00751630: hypothetical protein
fig|324831.13.peg.570 Lactobacillus gasseri ATCC 33323 FIG   FIG00751630: hypothetical protein
fig|324831.13.peg.631 Lactobacillus gasseri ATCC 33323 FIG   FIG00751630: hypothetical protein
gb|ABJ59978.1 Lactobacillus gasseri ATCC 33323     hypothetical protein LGAS_0582
gb|ABJ60038.1 Lactobacillus gasseri ATCC 33323     hypothetical protein LGAS_0644
gi|116094826 Lactobacillus gasseri ATCC 33323 NCBI   hypothetical protein LGAS_0582
gi|116094886 Lactobacillus gasseri ATCC 33323 NCBI   hypothetical protein LGAS_0644
gi|116629244 Lactobacillus gasseri ATCC 33323 NCBI   hypothetical protein LGAS_0582
gi|116629304 Lactobacillus gasseri ATCC 33323 NCBI   hypothetical protein LGAS_0644
img|639672439 Lactobacillus gasseri ATCC 33323 IMG   hypothetical protein
img|639672501 Lactobacillus gasseri ATCC 33323 IMG   hypothetical protein
kegg|lga:LGAS_0582 Lactobacillus gasseri ATCC 33323 KEGG   hypothetical protein
kegg|lga:LGAS_0644 Lactobacillus gasseri ATCC 33323 KEGG   hypothetical protein
ref|YP_814416.1 Lactobacillus gasseri ATCC 33323 RefSeq   hypothetical protein LGAS_0582
ref|YP_814476.1 Lactobacillus gasseri ATCC 33323 RefSeq   hypothetical protein LGAS_0644
tr|Q044T4 Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) TrEMBL   Putative uncharacterized protein


  Links to Related Entries in Other Sites

This PEG has no links.
add a new link


  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key
Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer



Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options


|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions


FIG search