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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|324831.10.peg.600: Lactobacillus gasseri ATCC 33323

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NCBI Taxonomy Id: 324831

Current Assignment: XRE family transcriptional regulator
Translate Function Assignments


Context on contig NC_008530 from base 638784 to 649041 (10258 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
593 638784 639215 432 +         ff FIG00746951: hypothetical protein LGAS_0631, YP_814463.1, gi|116629291, GeneID:4440189
594 639225 640157 933 + 9         Phage lysin, 1,4-beta-N-acetylmuramidase (EC 3.2.1.17) or lysozyme LGAS_0632, YP_814464.1, gi|116629292, GeneID:4440190
595 641967 640849 1119 - 691       cwn Mobile element protein LGAS_0634, YP_814466.1, gi|116629294, GeneID:4440157
596 642116 641970 147 - 2         FIG00745371: hypothetical protein  
597 642804 642181 624 - 64         lipoprotein, putative LGAS_0635, YP_814467.1, gi|116629295, GeneID:4440158
598 643351 642869 483 - 64         FIG00742762: hypothetical protein LGAS_0636, YP_814468.1, gi|116629296, GeneID:4440159
599 643664 643326 339 - -26       cwn Cro-like phage transcriptional repressor protein LGAS_0637, YP_814469.1, gi|116629297, GeneID:4440160
600 643818 644042 225 + 153         XRE family transcriptional regulator LGAS_0638, YP_814470.1, gi|116629298, GeneID:4440161
601 644075 644410 336 + 32         Phage related protein LGAS_0639, YP_814471.1, gi|116629299, GeneID:4440162
602 644379 644693 315 + -32         FIG00744823: hypothetical protein LGAS_0640, YP_814472.1, gi|116629300, GeneID:4440163
603 645009 645341 333 + 315         FIG00743546: hypothetical protein LGAS_0642, YP_814474.1, gi|116629302, GeneID:4440165
604 645341 646201 861 + -1         FIG00746299: hypothetical protein LGAS_0643, YP_814475.1, gi|116629303, GeneID:4440166
605 646207 647019 813 + 5         FIG00751630: hypothetical protein LGAS_0644, YP_814476.1, gi|116629304, GeneID:4440167
606 647029 647952 924 + 9         FIG00744143: hypothetical protein LGAS_0645, YP_814477.1, gi|116629305, GeneID:4440168
607 647958 648263 306 + 5         Transcriptional regulator, xre family LGAS_0646, YP_814478.1, gi|116629306, GeneID:4440169
608 648205 649041 837 + -59     1: 1 cwh Phage antirepressor protein LGAS_0647, YP_814479.1, gi|116629307, GeneID:4440170

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|324831.10.peg.600 XRE family transcriptional regulator
MKRELKSLRVGAGLTQTELAKRLGVTNVTVSRWERGEAIPKPKYIKAMAKLFNIKGQDIF
LNLITTKAYKVATK

MD5 = 5badedd66c38fcba4e6cfc9ca242728a


  DNA Sequence

>fig|324831.10.peg.600 XRE family transcriptional regulator
atgaagcgggaacttaaaagcttacgagttggagctgggcttacgcaaactgaattagca
aagcgattaggcgttactaatgttacagtttcaaggtgggagagaggagaagcaattcca
aagcccaagtatattaaagccatggcaaaattatttaatatcaaggggcaggatattttt
ttaaatttaattactactaaagcttataaagttgctacaaaatag


  DNA with Flanking Sequence

>fig|324831.10.peg.600 XRE family transcriptional regulator
acatggcattactcgtagtgaacgtctccatcattcttatgtctttcaagaattgctttg
ataacgtccatatcttcttctgaaacagggcgtccaccgtaactaagaacgacaggatct
ttttctaggtcaacggatttaggctcactagttttatctgaacctaataaataatcagct
gacacatcaaagtattcagctagtttagctaaagcaccgcttgaaggctcagctttccca
ttttcccatttagtaatagtttgttgagatacatgtaataatttgcttagttctgtttgt
gagagtctatgagatgtcctcaactcacgtattctatcgccaatcatgctcttcaacctc
cgtttatcaactattgtacttaaattataatactttatacatatttttaacttaaaaagt
aaaaaaagtagtaaaaagtgtttacattataaactatgatgtatataatatatatgtaag
ttgataaaggagttgataaaatgaagcgggaacttaaaagcttacgagttggagctgggc
ttacgcaaactgaattagcaaagcgattaggcgttactaatgttacagtttcaaggtggg
agagaggagaagcaattccaaagcccaagtatattaaagccatggcaaaattatttaata
tcaaggggcaggatatttttttaaatttaattactactaaagcttataaagttgctacaa
aatagaaacaaatagtgataataaagtaggtgattaaatgcctgagctaattaataaaga
tgctctcatagttatctttaagccgattatcaaagctttatttgataaggaaaaggaaga
agcagagggcgcaacaattaacattgatgagttccgaaaaaagtattgcggaggtaaagg
tcaagagtgggtaaggttgtatgttttcgataagtttaaaaaggaaattgatttcgaaaa
tggtggttttgtagttaacccacacaacggcaagaaaacaatcatttttagaaaagacgc
taaaaagtggattgaagaaaactatcaccgcattgattggaatgcaagtattaagaaaga
ttttgggaggtagaaaaatgataaaggttacaacgggcgatgtaattagacaattggtat
caagaggcgtattcgagtggaagaaagatgctgaatatcagattggcatcaaagatgaac
agattgttgttaacaaagatggatc


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
GO:0043565       F:sequence-specific DNA binding
fig|324831.10.peg.549 Lactobacillus gasseri ATCC 33323 FIG   XRE family transcriptional regulator
fig|324831.13.peg.564 Lactobacillus gasseri ATCC 33323 FIG   XRE family transcriptional regulator
fig|324831.13.peg.625 Lactobacillus gasseri ATCC 33323 FIG   XRE family transcriptional regulator
gb|ABJ59972.1 Lactobacillus gasseri ATCC 33323     Transcriptional regulator, xre family
gb|ABJ60032.1 Lactobacillus gasseri ATCC 33323     Transcriptional regulator, xre family
gi|116094820 Lactobacillus gasseri ATCC 33323 NCBI   Transcriptional regulator, xre family
gi|116094880 Lactobacillus gasseri ATCC 33323 NCBI   Transcriptional regulator, xre family
gi|116629238 Lactobacillus gasseri ATCC 33323 NCBI   XRE family transcriptional regulator
gi|116629298 Lactobacillus gasseri ATCC 33323 NCBI   XRE family transcriptional regulator
img|639672433 Lactobacillus gasseri ATCC 33323 IMG   Transcriptional regulator, xre family
img|639672495 Lactobacillus gasseri ATCC 33323 IMG   Transcriptional regulator, xre family
kegg|lga:LGAS_0576 Lactobacillus gasseri ATCC 33323 KEGG   XRE family transcriptional regulator
kegg|lga:LGAS_0638 Lactobacillus gasseri ATCC 33323 KEGG   XRE family transcriptional regulator
ref|YP_814410.1 Lactobacillus gasseri ATCC 33323 RefSeq   XRE family transcriptional regulator
ref|YP_814470.1 Lactobacillus gasseri ATCC 33323 RefSeq   XRE family transcriptional regulator
tr|Q044U0 Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) TrEMBL   Transcriptional regulator, xre family


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  Functional Coupling

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  Attributes

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  Protein Families

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