Protein Page for fig|323097.6.peg.3325

SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov

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Protein fig|323097.6.peg.3325: Nitrobacter hamburgensis X14

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NCBI Taxonomy Id: 323097

Current Assignment: FIG003573: hypothetical protein

Translate Function Assignments

Context on contig NC_007964 from base 2669068 to 2680616 (11549 bp)


Fid	Start	End	Size (nt)		Gap	Fc-sc	SS	Function	Aliases
3319	2669068	2669724	657	+				Uncharacterized phage-encoded protein-like	locus\|Nham_2408, protein_id\|YP_577659.1, gi\|92117930, geneID\|4030621
3320	2669721	2670050	330	+	-4			hypothetical protein	locus\|Nham_2409, protein_id\|YP_577660.1, gi\|92117931, geneID\|4030622
3321	2670121	2670261	141	+	70			hypothetical protein
3322	2670288	2671010	723	+	26			hypothetical protein	locus\|Nham_2410, protein_id\|YP_577661.1, gi\|92117932, geneID\|4030623
3323	2671013	2671603	591	+	2			hypothetical protein	locus\|Nham_2411, protein_id\|YP_577662.1, gi\|92117933, geneID\|4030624
3324	2672132	2673097	966	+	528			phage integrase	locus\|Nham_2413, protein_id\|YP_577663.1, gi\|92117934, InterPro:IPR002104, geneID\|4030626
3325	2673810	2674796	987	+	712			FIG003573: hypothetical protein	locus\|Nham_2414, protein_id\|YP_577664.1, gi\|92117935, geneID\|4030627
3326	2674839	2675447	609	+	42	7	3: 4 7 6	LSU ribosomal protein L9p	gene_name\|rplI, locus\|Nham_2415, protein_id\|YP_577665.1, gi\|92117936, InterPro:IPR000244, geneID\|4030628
3327	2677993	2675690	2304	-	242		4: 3 1 2 5	ATP-dependent Clp protease ATP-binding subunit ClpA	locus\|Nham_2416, protein_id\|YP_577666.1, gi\|92117937, InterPro:IPR001270, InterPro:IPR003593, InterPro:IPR003959, InterPro:IPR004176, InterPro:IPR013093, geneID\|4030629
3328	2677997	2678122	126	+	3			hypothetical protein
3329	2678762	2678349	414	-	226		3: 3 1 2	ATP-dependent Clp protease adaptor protein ClpS	locus\|Nham_2417, protein_id\|YP_577667.1, gi\|92117938, InterPro:IPR003769, geneID\|4030630
3330	2679270	2680616	1347	+	507			FIG00854202: hypothetical protein	locus\|Nham_2418, protein_id\|YP_577668.1, gi\|92117939, geneID\|4030361

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Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

Protein Sequence

>fig|323097.6.peg.3325 FIG003573: hypothetical protein
MIRNLLIAVAAGCASALMFASIISGALVSLLLFYLAPLPLMVAAMGWGPTCAAIGGALAG
AGLGGIFGPSYSAAFVLTVALPAWWLGHLVLLGRPVTADAPQHGTGAAPAGPPPVDWYPL
GRILIWIACFAALTTTAALLTLGSDASTIADTLRRGLQHIVNVQDAASRDRSSEFVDAFV
AIAPAAAATIAMTTLTLNVWLAAKVTATSGRLRRPWPDMKTTTLPPMALVATTVALALCF
VGGLPAMLAQIVTACLMMAYALVGFAVLHTITLAQRGRTLWLACIYAVVLVFVWPLITMV
GIGIGDAIFGFRQRYLQRHMPPPLAPKS

MD5 = 2ff3e236d0a607fdec10d5f56e7120ce

DNA Sequence

>fig|323097.6.peg.3325 FIG003573: hypothetical protein
atgatcagaaaccttctcattgcagttgcagccggctgcgcgtcggcgctgatgttcgcc
tcgatcatttcgggagcgctcgtctcactgctgctgttctatctggccccactgccgctg
atggtcgcggcgatgggatggggaccgacctgcgcggcgatcggcggcgctctggccggc
gccgggctcggcggcatcttcggcccgtcctattccgccgccttcgtgttgaccgtcgca
ctaccggcgtggtggctcgggcacctggtcctgctcggccgccctgtcacggccgatgcg
ccgcagcacggcaccggcgcggctccggccgggccgccgcctgttgactggtatccactc
ggacgcattctgatctggatcgcgtgcttcgccgccctgaccacgaccgccgcgctgctc
acgctcggttccgacgcatcgacgattgcggatacgctgcgccgcggattgcagcacatt
gtcaatgtgcaggatgcggcgtcacgcgatcgcagctcggagttcgtcgatgcgtttgtg
gccatcgctcccgccgcagccgcaacgatcgcgatgacgacgctgacgctcaacgtgtgg
ctcgcggccaaggtcaccgccacctctggccggctgcgacgcccctggcctgatatgaaa
acaacaacgctcccgccaatggcgctggttgcgacgaccgtggctctggcgctgtgcttc
gtcggcggactgccggccatgctggcccagatcgtcaccgcgtgcctgatgatggcgtat
gcgctcgtgggtttcgccgtactgcacacgatcacgctcgcgcaacgcggccgcacgctg
tggctcgcctgcatctacgccgtcgtgctggtgttcgtctggcccctcatcacgatggtc
ggcatcggcatcggcgacgcgattttcggatttcgccaacgctacctgcaacggcacatg
cctccgccgctcgcacctaaatcgtga

DNA with Flanking Sequence

>fig|323097.6.peg.3325 FIG003573: hypothetical protein
gcttggcgggagccgctgctctcagtcatcgatggttaccaggggacggtcgatgatgag
gctataacgtcgctaatttagtacagttcctaacaaatcaggagtgtggaccaacaatcg
gatcaaaacttcagaggattagtccggcggcttcagctcgccagcattttgagcaggtca
gttgctcggtggaaatgaccgtcctgccgcgttcagtgacgttcccgttacttctttggg
tctggctccgtcaatatttgaatcggactgcgcatgcgtccgcgcgtagaaaccctcgcc
tgtacctccgccaatgaagttgatccgccgggcaagatgccctacaagccgccatggccc
cgtagggggccatgaacatttcaggggtgtttctggtacggtaactggtacggaccaccc
cctcagaactctaaatagttggttcggctgcgatatttcgctgaccgcaatctaaccgct
cgaaaggagcgggacagctgatgatcagaaaccttctcattgcagttgcagccggctgcg
cgtcggcgctgatgttcgcctcgatcatttcgggagcgctcgtctcactgctgctgttct
atctggccccactgccgctgatggtcgcggcgatgggatggggaccgacctgcgcggcga
tcggcggcgctctggccggcgccgggctcggcggcatcttcggcccgtcctattccgccg
ccttcgtgttgaccgtcgcactaccggcgtggtggctcgggcacctggtcctgctcggcc
gccctgtcacggccgatgcgccgcagcacggcaccggcgcggctccggccgggccgccgc
ctgttgactggtatccactcggacgcattctgatctggatcgcgtgcttcgccgccctga
ccacgaccgccgcgctgctcacgctcggttccgacgcatcgacgattgcggatacgctgc
gccgcggattgcagcacattgtcaatgtgcaggatgcggcgtcacgcgatcgcagctcgg
agttcgtcgatgcgtttgtggccatcgctcccgccgcagccgcaacgatcgcgatgacga
cgctgacgctcaacgtgtggctcgcggccaaggtcaccgccacctctggccggctgcgac
gcccctggcctgatatgaaaacaacaacgctcccgccaatggcgctggttgcgacgaccg
tggctctggcgctgtgcttcgtcggcggactgccggccatgctggcccagatcgtcaccg
cgtgcctgatgatggcgtatgcgctcgtgggtttcgccgtactgcacacgatcacgctcg
cgcaacgcggccgcacgctgtggctcgcctgcatctacgccgtcgtgctggtgttcgtct
ggcccctcatcacgatggtcggcatcggcatcggcgacgcgattttcggatttcgccaac
gctacctgcaacggcacatgcctccgccgctcgcacctaaatcgtgaattcaacgcaaac
ccgctcaactccgaacaaggggatcgaacatggaagtcattctgctggaacgcgtggcca
agctcggccagatgggcgatgtcgtgaaggtgaagcacggtttcgcccgcaacttccttc
tcaaacgcggcaaggccctgcgtgcgaccgccgagaatcgaaccaaatacgacggcatga
aagccgaacttgaaatcaacaacatcaaggccaagggcgaagccgccaaagtcgccgaga
agatcgacggccgcgacatcgtcatcatccgccaggcgtccgagaccggtcagctatttg
gctcggtcacggtacgcgacatcgtggccgcgctggccgaggacggcatcactgtcagcc
gcccacaggtctggctcgatgcgccgatcaagacgatcggtcagcagaagctgacggtcg
cggtccatccggaggtggaagcccatgtcatggtgaccgtcgcccgcagcgccgacgaag
ccgagcg

Assignments for Essentially Identical Proteins


Id	Organism	Who	Assignment
cmr\|NT01NH2911	Nitrobacter hamburgensis X14		membrane protein, putative
fig\|323097.3.peg.3090	Nitrobacter hamburgensis X14	FIG	FIG003573: hypothetical protein
gb\|ABE63204.1	Nitrobacter hamburgensis X14		conserved hypothetical protein
gi\|91800829	Nitrobacter hamburgensis X14	NCBI	conserved hypothetical protein
gi\|92117935	Nitrobacter hamburgensis X14	NCBI	hypothetical protein Nham_2414
img\|637970873	Nitrobacter hamburgensis X14	IMG	hypothetical protein
kegg\|nha:Nham_2414	Nitrobacter hamburgensis X14	KEGG	hypothetical protein
ref\|YP_577664.1	Nitrobacter hamburgensis X14	RefSeq	hypothetical protein Nham_2414
tr\|Q1QKP3	Nitrobacter hamburgensis (strain X14 / DSM 10229)	TrEMBL	Putative uncharacterized protein precursor

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Functional Coupling


Score	Peg	Function
7	fig\|323097.6.peg.3326	LSU ribosomal protein L9p

Attributes

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