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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|323097.6.peg.3323: Nitrobacter hamburgensis X14

This feature in The SEED Viewer

NCBI Taxonomy Id: 323097

Current Assignment: hypothetical protein
Translate Function Assignments



Context on contig NC_007964 from base 2665560 to 2677993 (12434 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
3316 2665560 2666222 663 +           Phage repressor protein cI locus|Nham_2405, protein_id|YP_577656.1, gi|92117927, InterPro:IPR006198, geneID|4030618
3317 2666770 2667285 516 + 547         FIG00853276: hypothetical protein locus|Nham_2406, protein_id|YP_577657.1, gi|92117928, geneID|4030619
3318 2668471 2668010 462 - 724         hypothetical protein locus|Nham_2407, protein_id|YP_577658.1, gi|92117929, geneID|4030620
3319 2669068 2669724 657 + 596         Uncharacterized phage-encoded protein-like locus|Nham_2408, protein_id|YP_577659.1, gi|92117930, geneID|4030621
3320 2669721 2670050 330 + -4         hypothetical protein locus|Nham_2409, protein_id|YP_577660.1, gi|92117931, geneID|4030622
3321 2670121 2670261 141 + 70         hypothetical protein  
3322 2670288 2671010 723 + 26         hypothetical protein locus|Nham_2410, protein_id|YP_577661.1, gi|92117932, geneID|4030623
3323 2671013 2671603 591 + 2         hypothetical protein locus|Nham_2411, protein_id|YP_577662.1, gi|92117933, geneID|4030624
3324 2672132 2673097 966 + 528         phage integrase locus|Nham_2413, protein_id|YP_577663.1, gi|92117934, InterPro:IPR002104, geneID|4030626
3325 2673810 2674796 987 + 712         FIG003573: hypothetical protein locus|Nham_2414, protein_id|YP_577664.1, gi|92117935, geneID|4030627
3326 2674839 2675447 609 + 42     3: 2 7 5   LSU ribosomal protein L9p gene_name|rplI, locus|Nham_2415, protein_id|YP_577665.1, gi|92117936, InterPro:IPR000244, geneID|4030628
3327 2677993 2675690 2304 - 242     4: 6 3 1 4   ATP-dependent Clp protease ATP-binding subunit ClpA locus|Nham_2416, protein_id|YP_577666.1, gi|92117937, InterPro:IPR001270, InterPro:IPR003593, InterPro:IPR003959, InterPro:IPR004176, InterPro:IPR013093, geneID|4030629

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|323097.6.peg.3323 hypothetical protein
MLQLPFSSPSKAIPTSSPPLKDTTFDRIRRHKVLGEQVLALSEAEDQTIAAAQQIYGKRP
LALIAWHYYSAIGGDEIKRARREFFDQGMPADVVEREYLDAKRRYRERKAECLRWNKAAG
VYQIDRQIKAFVKERWNIIQSFIDEPPRTAKAASALIFYLLEFYDGCEFDELACDCLRGI
AKVLSPDGPQRLHGTI

MD5 = 0f70f8f6a7afd0fc03dcf8aa7febe0bc


  DNA Sequence

>fig|323097.6.peg.3323 hypothetical protein
atgctgcagcttcctttttccagtcccagcaaagccattccgacgtcttcgccgcctctt
aaggacaccacgttcgaccgcatccgtcgtcacaaggttcttggcgaacaggtcctggct
ctctcggaggcggaagatcagaccatcgcagcagcgcagcagatttacggtaagcggccc
ctcgccctcatcgcgtggcattactattccgccatcggtggcgatgagatcaagagggcg
cgccgcgagttctttgaccagggcatgcctgcggatgtcgtcgagcgagagtatctggat
gccaagcgtcgctaccgggaacggaaggctgagtgcctgcgctggaacaaggcggcgggt
gtctaccagatcgaccggcaaatcaaagccttcgtcaaggaacgttggaatatcatccag
tcgttcattgatgagccgccgcgcaccgcgaaagcagcgtcagcgctgatcttctacctc
ctggagttttacgatgggtgtgagttcgatgaactcgcatgcgattgcctccggggaatt
gccaaggtgttgtcgccggacggtccacaacgcctccatggaaccatctga


  DNA with Flanking Sequence

>fig|323097.6.peg.3323 hypothetical protein
ctggctgctgcgatgacgcccttcaatcagattttcgacgccattgtgaatgctgagtgc
aactcggcttctgacgttgcatggcaagtgcaggctgtcgtggactaccttgactgtctc
gagaccgacagcatcgaggaagcggttgatgcaactcagtttcggaaaatcgcggccaac
ctgaagcgcgccacggcttttcggcaaccgaagaagattccgggtaaagcctcaaaggga
cggcggttaacgcgcgcggggttactacagcgatatcagtcttttctaatcgaggaactt
ttcactctgagctgcgagctctatggcgatccacaatatgcgctgcaatacgttttattc
gatgacgcggtgcacaaggccctcaaaacagggacgcgcaaacgaactgacgtttttctg
gattccgttagcctgacttcacgcgctcgatcggtcttgaagtccctcaaaatcgacact
gagaatgtggggcgctgatcatgctgcagcttcctttttccagtcccagcaaagccattc
cgacgtcttcgccgcctcttaaggacaccacgttcgaccgcatccgtcgtcacaaggttc
ttggcgaacaggtcctggctctctcggaggcggaagatcagaccatcgcagcagcgcagc
agatttacggtaagcggcccctcgccctcatcgcgtggcattactattccgccatcggtg
gcgatgagatcaagagggcgcgccgcgagttctttgaccagggcatgcctgcggatgtcg
tcgagcgagagtatctggatgccaagcgtcgctaccgggaacggaaggctgagtgcctgc
gctggaacaaggcggcgggtgtctaccagatcgaccggcaaatcaaagccttcgtcaagg
aacgttggaatatcatccagtcgttcattgatgagccgccgcgcaccgcgaaagcagcgt
cagcgctgatcttctacctcctggagttttacgatgggtgtgagttcgatgaactcgcat
gcgattgcctccggggaattgccaaggtgttgtcgccggacggtccacaacgcctccatg
gaaccatctgatgctgtacgcatggccggcccgcgatccgcgactatccccctccccggt
cccggagtccggggggattggtcgtagggcctgtggatagcggacatgaattttccggca
cccgagactgtcacgccaaccacgcccctgaggcttgaggtagcggccgaactgggcttc
cctggcgggtcgatgaccgcggcttcgttgcggcggctggttgtcgcgaaaaagctcgca
cacgaaaagatcgccggaaagtatttcgtcaccctgtcggcgattgaggaaatgagagcg
ttatgccgcgtcccagcaaaggcccccgacttgccctccaaagatccagcgaccggcatc
caacctgggtcatccgagacggacaacggaccctcggcactggctgcgatgaacgcgatc
gcggaggggctgaaagaaaacttgcggcctacatcctcaaaaagcacaacccgcaaaaag
cgatcagccaaagtgatccgaatagcatcaa


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
cmr|NT01NH2907 Nitrobacter hamburgensis X14     conserved hypothetical protein
fig|323097.3.peg.3088 Nitrobacter hamburgensis X14 FIG   hypothetical protein
gb|ABE63202.1 Nitrobacter hamburgensis X14     hypothetical protein Nham_2411
gi|91800827 Nitrobacter hamburgensis X14 NCBI   hypothetical protein Nham_2411
gi|92117933 Nitrobacter hamburgensis X14 NCBI   hypothetical protein Nham_2411
img|637970871 Nitrobacter hamburgensis X14 IMG   hypothetical protein
kegg|nha:Nham_2411 Nitrobacter hamburgensis X14 KEGG   hypothetical protein
ref|YP_577662.1 Nitrobacter hamburgensis X14 RefSeq   hypothetical protein Nham_2411
tr|Q1QKP5 Nitrobacter hamburgensis (strain X14 / DSM 10229) TrEMBL   Putative uncharacterized protein


  Links to Related Entries in Other Sites

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  Functional Coupling

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  Attributes

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  Protein Families

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