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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|323097.6.peg.3321: Nitrobacter hamburgensis X14

This feature in The SEED Viewer

NCBI Taxonomy Id: 323097

Current Assignment: hypothetical protein
Translate Function Assignments



Context on contig NC_007964 from base 2665560 to 2675447 (9888 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
3316 2665560 2666222 663 +           Phage repressor protein cI locus|Nham_2405, protein_id|YP_577656.1, gi|92117927, InterPro:IPR006198, geneID|4030618
3317 2666770 2667285 516 + 547         FIG00853276: hypothetical protein locus|Nham_2406, protein_id|YP_577657.1, gi|92117928, geneID|4030619
3318 2668471 2668010 462 - 724         hypothetical protein locus|Nham_2407, protein_id|YP_577658.1, gi|92117929, geneID|4030620
3319 2669068 2669724 657 + 596         Uncharacterized phage-encoded protein-like locus|Nham_2408, protein_id|YP_577659.1, gi|92117930, geneID|4030621
3320 2669721 2670050 330 + -4         hypothetical protein locus|Nham_2409, protein_id|YP_577660.1, gi|92117931, geneID|4030622
3321 2670121 2670261 141 + 70         hypothetical protein  
3322 2670288 2671010 723 + 26         hypothetical protein locus|Nham_2410, protein_id|YP_577661.1, gi|92117932, geneID|4030623
3323 2671013 2671603 591 + 2         hypothetical protein locus|Nham_2411, protein_id|YP_577662.1, gi|92117933, geneID|4030624
3324 2672132 2673097 966 + 528         phage integrase locus|Nham_2413, protein_id|YP_577663.1, gi|92117934, InterPro:IPR002104, geneID|4030626
3325 2673810 2674796 987 + 712         FIG003573: hypothetical protein locus|Nham_2414, protein_id|YP_577664.1, gi|92117935, geneID|4030627
3326 2674839 2675447 609 + 42     3: 1 3 2   LSU ribosomal protein L9p gene_name|rplI, locus|Nham_2415, protein_id|YP_577665.1, gi|92117936, InterPro:IPR000244, geneID|4030628

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|323097.6.peg.3321 hypothetical protein
MELLGARGVSRFTPSVETSHKGAALIVAIALFISTAALWSAIFCGA

MD5 = 0bb24bc2d5c276fa45cc35d5388897fd


  DNA Sequence

>fig|323097.6.peg.3321 hypothetical protein
atggagcttctgggtgcaaggggcgtcagcaggtttacaccgtcggtggaaacctcccac
aagggcgccgcgttgatcgtcgccatcgccctcttcatttcaaccgccgcactctggtcc
gcaatcttctgcggagcgtga


  DNA with Flanking Sequence

>fig|323097.6.peg.3321 hypothetical protein
gcgagtcgcatctgcggggctgggttacggcgaaaggcgtcgagcattttgcaaagcatg
ctcccgactggattcggatcaccccgcgggaggtgaagccgtgatcgataaatcctcaaa
tcgcggcgaaggaccgaccccggccgccattcgcgaggctgttgtggatgcggcgatgtg
cggccttagacgccgtagaacgccgtcccgaaagaacccgctgtatgtgccgccgacacc
ggcagacgctgcatggacccacgtctatggcacggcgcgtgcattcgtggaatgggcgac
cgacgcaaacatcaacctcgcgaccaccggcctgcgcgaacgggatgacagccaggcgtc
gaatatccgcgcggttcgggactgcgccaacatcttccgcgcgctcgtggagcagatcga
tgctcaataggcgcgtcgcgaattttaccgagcttgtttggtccacggtcggcaatagcg
ctcctgtcgataagcgcaggatggagcttctgggtgcaaggggcgtcagcaggtttacac
cgtcggtggaaacctcccacaagggcgccgcgttgatcgtcgccatcgccctcttcattt
caaccgccgcactctggtccgcaatcttctgcggagcgtgatcggcgcgtccgatcggag
aacagcaatgcttcagcttccacaaagaccggctgagactgtcccttgtccgcaagtcgc
caaaccggccggtgtcgatgcagtcgatgcgatcttcggcacaacgccggctggcttcga
cctgaacaaccagcccattccgatgctggtctattggctgaaaaaggccagagcgaaagt
ggacgggatcacagcggatgcgctcacagcgggcgaatattccgaagctgatctggctgc
tgcgatgacgcccttcaatcagattttcgacgccattgtgaatgctgagtgcaactcggc
ttctgacgttgcatggcaagtgcaggctgtcgtggactaccttgactgtctcgagaccga
cagcatcgaggaagcggttgatgcaactcagtttcggaaaatcgcggccaacctgaagcg
cgccacggcttttcggcaaccgaagaagattccgggtaaagcctcaaagggacggcggtt
a


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
cmr|NT01NH2905 Nitrobacter hamburgensis X14     hypothetical protein


  Links to Related Entries in Other Sites

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  Functional Coupling

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  Attributes

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  Protein Families

No protein families found

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