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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|323097.6.peg.3320: Nitrobacter hamburgensis X14

This feature in The SEED Viewer

NCBI Taxonomy Id: 323097

Current Assignment: hypothetical protein
Translate Function Assignments


Context on contig NC_007964 from base 2665560 to 2675447 (9888 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
3316 2665560 2666222 663 +           Phage repressor protein cI locus|Nham_2405, protein_id|YP_577656.1, gi|92117927, InterPro:IPR006198, geneID|4030618
3317 2666770 2667285 516 + 547         FIG00853276: hypothetical protein locus|Nham_2406, protein_id|YP_577657.1, gi|92117928, geneID|4030619
3318 2668471 2668010 462 - 724         hypothetical protein locus|Nham_2407, protein_id|YP_577658.1, gi|92117929, geneID|4030620
3319 2669068 2669724 657 + 596         Uncharacterized phage-encoded protein-like locus|Nham_2408, protein_id|YP_577659.1, gi|92117930, geneID|4030621
3320 2669721 2670050 330 + -4         hypothetical protein locus|Nham_2409, protein_id|YP_577660.1, gi|92117931, geneID|4030622
3321 2670121 2670261 141 + 70         hypothetical protein  
3322 2670288 2671010 723 + 26         hypothetical protein locus|Nham_2410, protein_id|YP_577661.1, gi|92117932, geneID|4030623
3323 2671013 2671603 591 + 2         hypothetical protein locus|Nham_2411, protein_id|YP_577662.1, gi|92117933, geneID|4030624
3324 2672132 2673097 966 + 528         phage integrase locus|Nham_2413, protein_id|YP_577663.1, gi|92117934, InterPro:IPR002104, geneID|4030626
3325 2673810 2674796 987 + 712         FIG003573: hypothetical protein locus|Nham_2414, protein_id|YP_577664.1, gi|92117935, geneID|4030627
3326 2674839 2675447 609 + 42     3: 1 3 2   LSU ribosomal protein L9p gene_name|rplI, locus|Nham_2415, protein_id|YP_577665.1, gi|92117936, InterPro:IPR000244, geneID|4030628

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|323097.6.peg.3320 hypothetical protein
MIDKSSNRGEGPTPAAIREAVVDAAMCGLRRRRTPSRKNPLYVPPTPADAAWTHVYGTAR
AFVEWATDANINLATTGLRERDDSQASNIRAVRDCANIFRALVEQIDAQ

MD5 = 83decf23dba5bb103f49b1a2565b352c


  DNA Sequence

>fig|323097.6.peg.3320 hypothetical protein
gtgatcgataaatcctcaaatcgcggcgaaggaccgaccccggccgccattcgcgaggct
gttgtggatgcggcgatgtgcggccttagacgccgtagaacgccgtcccgaaagaacccg
ctgtatgtgccgccgacaccggcagacgctgcatggacccacgtctatggcacggcgcgt
gcattcgtggaatgggcgaccgacgcaaacatcaacctcgcgaccaccggcctgcgcgaa
cgggatgacagccaggcgtcgaatatccgcgcggttcgggactgcgccaacatcttccgc
gcgctcgtggagcagatcgatgctcaatag


  DNA with Flanking Sequence

>fig|323097.6.peg.3320 hypothetical protein
ggcaagcgcgacagctacattgtcgtcgcccaactctccccggagttcactgcccggctc
gtcgaccgctggcaggagctggagtccaccagtggccgcgccctaccgcaatcctttgcc
gatgccttgcagctcgcggcagaccaagcgcgtcagatcgaacaacagcacacgctactc
attgagcaacagcctaaggtcgagttttacgaccagttcgtaaaagccgatggcttgctc
gggtatcaagaagctggcaccgccgccggctgctacccgaacaagttctgcaactggctg
aagatcgaccatctgttttatcgcggcaagaagttgatgccgcggtcgcaattcgtccgc
cgtggtctttttgagatccggccagaactcgacgccaacggcgagtcgcatctgcggggc
tgggttacggcgaaaggcgtcgagcattttgcaaagcatgctcccgactggattcggatc
accccgcgggaggtgaagccgtgatcgataaatcctcaaatcgcggcgaaggaccgaccc
cggccgccattcgcgaggctgttgtggatgcggcgatgtgcggccttagacgccgtagaa
cgccgtcccgaaagaacccgctgtatgtgccgccgacaccggcagacgctgcatggaccc
acgtctatggcacggcgcgtgcattcgtggaatgggcgaccgacgcaaacatcaacctcg
cgaccaccggcctgcgcgaacgggatgacagccaggcgtcgaatatccgcgcggttcggg
actgcgccaacatcttccgcgcgctcgtggagcagatcgatgctcaataggcgcgtcgcg
aattttaccgagcttgtttggtccacggtcggcaatagcgctcctgtcgataagcgcagg
atggagcttctgggtgcaaggggcgtcagcaggtttacaccgtcggtggaaacctcccac
aagggcgccgcgttgatcgtcgccatcgccctcttcatttcaaccgccgcactctggtcc
gcaatcttctgcggagcgtgatcggcgcgtccgatcggagaacagcaatgcttcagcttc
cacaaagaccggctgagactgtcccttgtccgcaagtcgccaaaccggccggtgtcgatg
cagtcgatgcgatcttcggcacaacgccggctggcttcgacctgaacaaccagcccattc
cgatgctggtctattggctgaaaaaggccagagcgaaagtggacgggatcacagcggatg
cgctcacagcgggcgaatattccgaagctgatctggctgctgcgatgacgcccttcaatc
agattttcga


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
cmr|NT01NH2904 Nitrobacter hamburgensis X14     conserved hypothetical protein
fig|323097.3.peg.3086 Nitrobacter hamburgensis X14 FIG   hypothetical protein
gb|ABE63200.1 Nitrobacter hamburgensis X14     hypothetical protein Nham_2409
gi|91800825 Nitrobacter hamburgensis X14 NCBI   hypothetical protein Nham_2409
gi|92117931 Nitrobacter hamburgensis X14 NCBI   hypothetical protein Nham_2409
img|637970869 Nitrobacter hamburgensis X14 IMG   hypothetical protein
kegg|nha:Nham_2409 Nitrobacter hamburgensis X14 KEGG   hypothetical protein
ref|YP_577660.1 Nitrobacter hamburgensis X14 RefSeq   hypothetical protein Nham_2409
tr|Q1QKP7 Nitrobacter hamburgensis (strain X14 / DSM 10229) TrEMBL   Putative uncharacterized protein


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  Functional Coupling

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  Attributes

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  Protein Families

No protein families found

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