Protein Page for fig|272626.9.peg.1300

SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov

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Protein fig|272626.9.peg.1300: Listeria innocua Clip11262

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NCBI Taxonomy Id: 272626

Current Assignment: Phage-like element PBSX protein XkdE

Translate Function Assignments

Context on contig NC_003212 from base 1266855 to 1278514 (11660 bp)


Fid	Start	End	Size (nt)		Gap	Fc-sc	SS	Function	Aliases
1293	1266855	1267334	480	+				hypothetical protein	locus\|lin1261, protein_id\|NP_470598.1, gi\|16800330, geneID\|1129831
1294	1267399	1268736	1338	+	64		1: 1	Phage DNA modification methylase	locus\|lin1262, protein_id\|NP_470599.1, gi\|16800331, geneID\|1129832
1295	1268784	1268981	198	+	47			hypothetical protein	locus\|lin1263, protein_id\|NP_470600.1, gi\|16800332, geneID\|1129833
1296	1269111	1269341	231	+	129			FIG00774828: hypothetical protein	locus\|lin1264, protein_id\|NP_470601.1, gi\|16800333, geneID\|1129834
1297	1269369	1269593	225	+	27			hypothetical protein	locus\|lin1265, protein_id\|NP_470602.1, gi\|16800334, geneID\|1129835
1298	1269646	1270482	837	+	52			Phage terminase, small subunit	locus\|lin1266, protein_id\|NP_470603.1, gi\|16800335, geneID\|1129836
1299	1270469	1271803	1335	+	-14			Phage terminase, large subunit ## PBSX family	locus\|lin1267, protein_id\|NP_470604.1, gi\|16800336, geneID\|1129838
1300	1271793	1273367	1575	+	-11			Phage-like element PBSX protein XkdE	locus\|lin1268, protein_id\|NP_470605.1, gi\|16800337, geneID\|1129840
1301	1273354	1275102	1749	+	-14			Phage minor capsid protein	locus\|lin1269, protein_id\|NP_470606.1, gi\|16800338, geneID\|1129842
1302	1275104	1275385	282	+	1			hypothetical protein
1303	1275480	1276574	1095	+	94			Phage-like element PBSX protein XkdF	locus\|lin1270, protein_id\|NP_470607.1, gi\|16800339, geneID\|1129843
1304	1276590	1277519	930	+	15	4		Phage-like element PBSX protein XkdG	locus\|lin1271, protein_id\|NP_470608.1, gi\|16800340, geneID\|1129844
1305	1277525	1277737	213	+	5			hypothetical protein	locus\|lin1272, protein_id\|NP_470609.1, gi\|16800341, geneID\|1129846
1306	1277749	1278153	405	+	11			Uncharacterized protein YqbG	locus\|lin1273, protein_id\|NP_470610.1, gi\|16800342, geneID\|1129847
1307	1278155	1278514	360	+	1			Phage-like element PBSX protein XkdH	locus\|lin1274, protein_id\|NP_470611.1, gi\|16800343, geneID\|1129849

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Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

Protein Sequence

>fig|272626.9.peg.1300 Phage-like element PBSX protein XkdE
MANKSRARVVKAEKNNTLSNQISKEDAFNGIYGDDSQVIRPPYNLEELSKITENSTVLQQ
CIDAYTTNLFGFGIDAESRLDLNSKDMTPEKKAKAESETKRLQEFIRYANLDEGTETVFQ
NIIEDQEKTGNGYIEVLRDGKGQPVELVHCDSQYIRVCKKTEPVEVGYTIMEKGEPVNIL
RNKRFRKFVQIIDEKKVWFKEYGDPRIMDSTNGNYVEESELESKEFRDATEIIHFKIGTS
AYGVPRWIGNVVSLYGARKAEELNLLYFVNGRHVPAAVVVQGGLLDEDAYNNLEEYMKGV
SGTENAYQFLVLEVQGEEITNANGDKNLSDVKVEIKSLADMIQKDAMFLEYDATHRKKMR
SSFRLPPIYTGEADEYNKATAETARKTTEEQVFQPMRRKLARKINGAFLEALDISEAKLV
LKSPDLTDIASISNAIYPFISAASVIPNDLRPMLEKLLNRKLDELPEEYNKPISILLAEM
QGQSNEHTVSEPKTVQKSLSEYDNVLVMKQMRDLLQELKDNGKL

MD5 = e6c4030058dfb53801bd6a64f126af42

DNA Sequence

>fig|272626.9.peg.1300 Phage-like element PBSX protein XkdE
gtggcaaataaaagtagagcgcgagtagtaaaagcagaaaaaaataatacactatcaaac
caaatttccaaagaagatgcatttaatggtatatacggtgatgacagccaagtaattaga
ccaccatataatttagaagaactatctaaaataacagagaattcgactgtattacaacaa
tgtattgatgcttatactactaatctctttggctttggcatagatgcagagtccagatta
gatttaaatagcaaagatatgacaccggaaaagaaagctaaagcagaaagtgaaacaaaa
agacttcaagagttcatacgttatgcaaatctcgatgaaggaacagaaactgtgtttcaa
aatattatcgaggatcaagagaaaacaggaaatggttatattgaagtgttacgagatggc
aaaggtcaacctgtagagttagtacattgtgatagtcaatatattcgagtatgtaaaaaa
acagagccagtagaagtgggatacacaatcatggaaaaaggggagccggttaatattttg
cggaataagcgattccgtaaatttgtgcaaattattgatgaaaaaaaagtttggtttaaa
gagtacggtgatccacgaataatggatagtaccaatgggaactatgtggaagaatcagaa
ttagaatcaaaagaatttcgtgatgctacggaaattattcatttcaaaatcgggacctct
gcctatggggttcctcgatggattggtaacgtagttagtctttatggcgcaagaaaggca
gaggaattaaatctcttgtactttgttaatgggcgtcacgttccagctgctgttgttgtt
cagggtggcttgctagatgaagatgcatataacaacttagaagagtacatgaaaggtgtc
tcagggactgaaaatgcctatcaattcttagttttagaagttcaaggggaagagataaca
aatgctaatggtgataaaaacttatctgatgtaaaagtagaaataaaatcattggcagat
atgattcaaaaggacgcaatgtttttagaatatgatgcaacacacaggaaaaaaatgcgt
tcttctttccgattgccgccaatttatacaggtgaagcggacgaatataataaggccact
gcagaaacagcacggaagacgacggaagaacaagtattccaaccgatgcgtagaaagttg
gccaggaagataaatggtgcttttttagaggcgttagatatatctgaagccaaattagta
ttaaaaagtcctgatcttacagatattgcttcaatatccaatgctatatatccatttatc
tcagcagcatccgtcattcctaatgatttgcgtccaatgcttgaaaaattattgaatagg
aagctagatgaattacctgaggaatacaacaaaccaatatctattcttctcgcagaaatg
caaggacaatctaatgaacatactgtttcggaaccgaagacagttcaaaaatcactatct
gaatacgataacgtattagtaatgaaacagatgagagatttgttacaggagttgaaggac
aatggtaaactatga

DNA with Flanking Sequence

>fig|272626.9.peg.1300 Phage-like element PBSX protein XkdE
aatggattttggttttgttgagtccatgaatgcattactcagtatgacaatagaccctga
caagaaagatttatatattcactttgaatattatgcaaatgggaatacggatgatgtgac
ggctcaagatataaaggaatttaaagagacaaaagaagtaatttttgctgattccgcaga
gccgaaaacaattaaatactttagtgataatggatttgttatgtatgcagctcacaaatt
tccagggtcacgtttacaaaacacaaaaaaggttaaacggttcagacatatttatgtatc
aagtaactgtagcaacactataaacgaattaaagcatttaacttttgctaaagataaatt
aggaaaaactattgaggatgaatttaatattgatccacatacatttagtgcgatttggta
tgggctggacggttatgaagtagctgatattaaagacaaaacagaccgtagtaggcgagc
aagaagggagcgaagaaaacgtggcaaataaaagtagagcgcgagtagtaaaagcagaaa
aaaataatacactatcaaaccaaatttccaaagaagatgcatttaatggtatatacggtg
atgacagccaagtaattagaccaccatataatttagaagaactatctaaaataacagaga
attcgactgtattacaacaatgtattgatgcttatactactaatctctttggctttggca
tagatgcagagtccagattagatttaaatagcaaagatatgacaccggaaaagaaagcta
aagcagaaagtgaaacaaaaagacttcaagagttcatacgttatgcaaatctcgatgaag
gaacagaaactgtgtttcaaaatattatcgaggatcaagagaaaacaggaaatggttata
ttgaagtgttacgagatggcaaaggtcaacctgtagagttagtacattgtgatagtcaat
atattcgagtatgtaaaaaaacagagccagtagaagtgggatacacaatcatggaaaaag
gggagccggttaatattttgcggaataagcgattccgtaaatttgtgcaaattattgatg
aaaaaaaagtttggtttaaagagtacggtgatccacgaataatggatagtaccaatggga
actatgtggaagaatcagaattagaatcaaaagaatttcgtgatgctacggaaattattc
atttcaaaatcgggacctctgcctatggggttcctcgatggattggtaacgtagttagtc
tttatggcgcaagaaaggcagaggaattaaatctcttgtactttgttaatgggcgtcacg
ttccagctgctgttgttgttcagggtggcttgctagatgaagatgcatataacaacttag
aagagtacatgaaaggtgtctcagggactgaaaatgcctatcaattcttagttttagaag
ttcaaggggaagagataacaaatgctaatggtgataaaaacttatctgatgtaaaagtag
aaataaaatcattggcagatatgattcaaaaggacgcaatgtttttagaatatgatgcaa
cacacaggaaaaaaatgcgttcttctttccgattgccgccaatttatacaggtgaagcgg
acgaatataataaggccactgcagaaacagcacggaagacgacggaagaacaagtattcc
aaccgatgcgtagaaagttggccaggaagataaatggtgcttttttagaggcgttagata
tatctgaagccaaattagtattaaaaagtcctgatcttacagatattgcttcaatatcca
atgctatatatccatttatctcagcagcatccgtcattcctaatgatttgcgtccaatgc
ttgaaaaattattgaataggaagctagatgaattacctgaggaatacaacaaaccaatat
ctattcttctcgcagaaatgcaaggacaatctaatgaacatactgtttcggaaccgaaga
cagttcaaaaatcactatctgaatacgataacgtattagtaatgaaacagatgagagatt
tgttacaggagttgaaggacaatggtaaactatgacgctatagataaccttatcgatact
atcaatatattagtagagaaggttaatgaaggagaattcgaaaaagaactacttggacaa
ctaggaatgaaaaatattcccgcatttgttgagacgttcgagaaggacatttctagcctt
cttctaatccagaggtcttattatattaatcaacttaaaaaaactgtaataaaggcagaa
aaaccacttacgattgaagaattatttcaatactactctaatgatttgtttataggtgat
gattttagaataaatatgtctaaaaaagcatctgattttcttacagcaacaacaaaagac
attagtaaaactgttatgaagtcactagataaagatgtctctttcaaacgtttatctgga
cgttctgtgagctggattaaagaatggtcagaggatttggccaacctaatgaaaattagt
actcaatccgaagtagagggggtgctaataaaggcactgagtgaagggaaaggta

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  Functional Coupling


Score	Peg	Function
4	fig\|272626.9.peg.1304	Phage-like element PBSX protein XkdG

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