Protein Page for fig|272626.9.peg.1298

SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov

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Protein fig|272626.9.peg.1298: Listeria innocua Clip11262

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NCBI Taxonomy Id: 272626

Current Assignment: Phage terminase, small subunit

Translate Function Assignments

Context on contig NC_003212 from base 1264362 to 1276574 (12213 bp)


Fid	Start	End	Size (nt)		Gap	SS	Function	Aliases
1290	1264362	1264922	561	+			FIG00774160: hypothetical protein	locus\|lin1258, protein_id\|NP_470595.1, gi\|16800327, geneID\|1129827
1291	1265003	1265425	423	+	80		hypothetical protein	locus\|lin1259, protein_id\|NP_470596.1, gi\|16800328, geneID\|1129828
1292	1265438	1266205	768	+	12		Phage antirepressor protein	locus\|lin1260, protein_id\|NP_470597.1, gi\|16800329, geneID\|1129829
1293	1266855	1267334	480	+	649		hypothetical protein	locus\|lin1261, protein_id\|NP_470598.1, gi\|16800330, geneID\|1129831
1294	1267399	1268736	1338	+	64	1: 1	Phage DNA modification methylase	locus\|lin1262, protein_id\|NP_470599.1, gi\|16800331, geneID\|1129832
1295	1268784	1268981	198	+	47		hypothetical protein	locus\|lin1263, protein_id\|NP_470600.1, gi\|16800332, geneID\|1129833
1296	1269111	1269341	231	+	129		FIG00774828: hypothetical protein	locus\|lin1264, protein_id\|NP_470601.1, gi\|16800333, geneID\|1129834
1297	1269369	1269593	225	+	27		hypothetical protein	locus\|lin1265, protein_id\|NP_470602.1, gi\|16800334, geneID\|1129835
1298	1269646	1270482	837	+	52		Phage terminase, small subunit	locus\|lin1266, protein_id\|NP_470603.1, gi\|16800335, geneID\|1129836
1299	1270469	1271803	1335	+	-14		Phage terminase, large subunit ## PBSX family	locus\|lin1267, protein_id\|NP_470604.1, gi\|16800336, geneID\|1129838
1300	1271793	1273367	1575	+	-11		Phage-like element PBSX protein XkdE	locus\|lin1268, protein_id\|NP_470605.1, gi\|16800337, geneID\|1129840
1301	1273354	1275102	1749	+	-14		Phage minor capsid protein	locus\|lin1269, protein_id\|NP_470606.1, gi\|16800338, geneID\|1129842
1302	1275104	1275385	282	+	1		hypothetical protein
1303	1275480	1276574	1095	+	94		Phage-like element PBSX protein XkdF	locus\|lin1270, protein_id\|NP_470607.1, gi\|16800339, geneID\|1129843

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Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

Protein Sequence

>fig|272626.9.peg.1298 Phage terminase, small subunit
MDNLDKELIKKDYLAGMKNKEIVEKYGISPNTLKAWIRRYGWKDEKEKGASKTKKMGAPF
GNVNAKGNSGGGAPLGNKNAIGNSGGGAPFGNKNALFTGEFEIIDPDYFSDEEKKIYNSL
TDHPLAHANNIIKDEYIRKRRMMKRLNELENNLSESEKEIKKAYLKQDIRKVIERDGQKA
IMTVPELVLVEQKEETKRKIDDVLRLEESITRQNGVLLRALRDKSAIIAQLSMLPLNQEK
TQKEIEMLELEIQELKGIDLEKPLEIRVSRAVKKLGRS

MD5 = 5f2b59f6f3b3fa9e70bccfe59ee363dc

DNA Sequence

>fig|272626.9.peg.1298 Phage terminase, small subunit
atggataacctagataaagagctcataaaaaaagactatttggcaggaatgaagaacaaa
gaaatagtagaaaaatatggcatatctccgaataccttgaaggcgtggattagaagatat
ggttggaaagatgaaaaagaaaagggtgcatccaaaacaaaaaaaatgggcgcacccttt
ggaaatgtaaacgcaaaagggaattcgggcggtggggcacctttaggcaataaaaacgcg
ataggtaactctggcgggggtgcaccctttggtaataagaatgcactttttacaggagag
ttcgaaattattgatcctgattactttagcgatgaagaaaaaaaaatatacaattctctg
acagaccaccccctagcccacgctaataatatcattaaagatgaatatattcggaaaaga
agaatgatgaaacgactaaacgaattagaaaataatttgtcggagtctgaaaaagagata
aaaaaagcttacttaaaacaagatataagaaaagttattgaaagagacggacagaaagca
attatgacagttcctgagctagtacttgttgaacaaaaagaagaaactaaacgtaagata
gatgatgttttacggctagaagaatctattacaagacaaaacggtgttttacttagagca
ttgagagacaagtctgcaataattgctcagctatctatgctaccgctcaatcaagaaaaa
acacaaaaagaaatcgaaatgctagaactcgaaatacaagagcttaaaggtatagactta
gaaaaaccgcttgaaattagagtctcaagggcggtgaagaaacttggtagaagctaa

DNA with Flanking Sequence

>fig|272626.9.peg.1298 Phage terminase, small subunit
cttaaatgatgatttattagatttagagataactaaagctcttgaagaagctaaaacaga
tgaagaatacaaaaaaattattcgagctacgctggggaagtggcttaataatctacaaga
aggcaatatacgtcttgaatctgtaaatgaccttaaaaccctcattgaagcagatagatt
actaagaagagattaacttttattgaaagattggagaataaacatgacccttatattttg
gactaaaaatggacaagagatggaatttgatctagttgaaaatgtagagattgacgagaa
aattattacattcgattactatggagaaggtgaaaaaagaggcgtagtgtttatattaaa
taatcttgctggcatggctgtagaggatgagaattcggagagtgaaagtaaagatggtgc
atcttggtttaaagtgtacaggggttaagtaaagtaaaaacgaacataaacataagtaat
ggtggtgacgttgatgtgtcatggataacctagataaagagctcataaaaaaagactatt
tggcaggaatgaagaacaaagaaatagtagaaaaatatggcatatctccgaataccttga
aggcgtggattagaagatatggttggaaagatgaaaaagaaaagggtgcatccaaaacaa
aaaaaatgggcgcaccctttggaaatgtaaacgcaaaagggaattcgggcggtggggcac
ctttaggcaataaaaacgcgataggtaactctggcgggggtgcaccctttggtaataaga
atgcactttttacaggagagttcgaaattattgatcctgattactttagcgatgaagaaa
aaaaaatatacaattctctgacagaccaccccctagcccacgctaataatatcattaaag
atgaatatattcggaaaagaagaatgatgaaacgactaaacgaattagaaaataatttgt
cggagtctgaaaaagagataaaaaaagcttacttaaaacaagatataagaaaagttattg
aaagagacggacagaaagcaattatgacagttcctgagctagtacttgttgaacaaaaag
aagaaactaaacgtaagatagatgatgttttacggctagaagaatctattacaagacaaa
acggtgttttacttagagcattgagagacaagtctgcaataattgctcagctatctatgc
taccgctcaatcaagaaaaaacacaaaaagaaatcgaaatgctagaactcgaaatacaag
agcttaaaggtatagacttagaaaaaccgcttgaaattagagtctcaagggcggtgaaga
aacttggtagaagctaatgtagttgatttagtcgttaaccctcattttgaggagtacgta
tttgattggacacaaaaaacatttcttgctgtaggtgcttatggttcgagtaaaagctat
gcaacagctgaaaaaattataataaaattatttgaagaaaaacgaaaatgcttagttgtt
agggatgttcacgaatcgcacaaggattctactttcgctttattaactgaaatccttgag
gaaatgggtgttgttgggagaggtaaaaggaaagttgtaattactcaaagtcctatgaaa
ataaaatttcctaatgggtcatccataatttttaaaggattggataaacctagtaagtta
aagtctatagctaatatttctattatttgggtagaagagtgctcagagattagttatgct
gcatacaaagaacttttaggacggttaagacatccgtttttaaaaacacatattatttta
acttcaaaccctgtcagtatagataattgggtctatt

Assignments for Essentially Identical Proteins


Id	Organism	Who	Assignment
cmr\|NT01LI1319	Listeria innocua CLIP 11262		conserved hypothetical protein
emb\|CAC96497.1	Listeria innocua	EMBL	lin1266
fig\|272626.1.peg.1256	Listeria innocua Clip11262	FIG	Phage terminase, small subunit
gi\|16413740	Listeria innocua	NCBI	lin1266
gi\|16800335	Listeria innocua Clip11262	NCBI	hypothetical protein lin1266
img\|637223994	Listeria innocua Clip11262	IMG	hypothetical protein
kegg\|lin:lin1266	Listeria innocua CLIP 11262 (serotype 6a)	KEGG	hypothetical protein
ref\|NP_470603.1	Listeria innocua Clip11262	RefSeq	hypothetical protein lin1266
tr\|Q92CC3	Listeria innocua	TrEMBL	Lin1266 protein

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