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SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
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Protein fig|272626.9.peg.1298: Listeria innocua Clip11262

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NCBI Taxonomy Id: 272626

Current Assignment: Phage terminase, small subunit
Translate Function Assignments



Context on contig NC_003212 from base 1264362 to 1276574 (12213 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
1290 1264362 1264922 561 +           FIG00774160: hypothetical protein locus|lin1258, protein_id|NP_470595.1, gi|16800327, geneID|1129827
1291 1265003 1265425 423 + 80         hypothetical protein locus|lin1259, protein_id|NP_470596.1, gi|16800328, geneID|1129828
1292 1265438 1266205 768 + 12         Phage antirepressor protein locus|lin1260, protein_id|NP_470597.1, gi|16800329, geneID|1129829
1293 1266855 1267334 480 + 649         hypothetical protein locus|lin1261, protein_id|NP_470598.1, gi|16800330, geneID|1129831
1294 1267399 1268736 1338 + 64     1: 1   Phage DNA modification methylase locus|lin1262, protein_id|NP_470599.1, gi|16800331, geneID|1129832
1295 1268784 1268981 198 + 47         hypothetical protein locus|lin1263, protein_id|NP_470600.1, gi|16800332, geneID|1129833
1296 1269111 1269341 231 + 129         FIG00774828: hypothetical protein locus|lin1264, protein_id|NP_470601.1, gi|16800333, geneID|1129834
1297 1269369 1269593 225 + 27         hypothetical protein locus|lin1265, protein_id|NP_470602.1, gi|16800334, geneID|1129835
1298 1269646 1270482 837 + 52         Phage terminase, small subunit locus|lin1266, protein_id|NP_470603.1, gi|16800335, geneID|1129836
1299 1270469 1271803 1335 + -14         Phage terminase, large subunit ## PBSX family locus|lin1267, protein_id|NP_470604.1, gi|16800336, geneID|1129838
1300 1271793 1273367 1575 + -11         Phage-like element PBSX protein XkdE locus|lin1268, protein_id|NP_470605.1, gi|16800337, geneID|1129840
1301 1273354 1275102 1749 + -14         Phage minor capsid protein locus|lin1269, protein_id|NP_470606.1, gi|16800338, geneID|1129842
1302 1275104 1275385 282 + 1         hypothetical protein  
1303 1275480 1276574 1095 + 94         Phage-like element PBSX protein XkdF locus|lin1270, protein_id|NP_470607.1, gi|16800339, geneID|1129843

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|272626.9.peg.1298 Phage terminase, small subunit
MDNLDKELIKKDYLAGMKNKEIVEKYGISPNTLKAWIRRYGWKDEKEKGASKTKKMGAPF
GNVNAKGNSGGGAPLGNKNAIGNSGGGAPFGNKNALFTGEFEIIDPDYFSDEEKKIYNSL
TDHPLAHANNIIKDEYIRKRRMMKRLNELENNLSESEKEIKKAYLKQDIRKVIERDGQKA
IMTVPELVLVEQKEETKRKIDDVLRLEESITRQNGVLLRALRDKSAIIAQLSMLPLNQEK
TQKEIEMLELEIQELKGIDLEKPLEIRVSRAVKKLGRS

MD5 = 5f2b59f6f3b3fa9e70bccfe59ee363dc


  DNA Sequence

>fig|272626.9.peg.1298 Phage terminase, small subunit
atggataacctagataaagagctcataaaaaaagactatttggcaggaatgaagaacaaa
gaaatagtagaaaaatatggcatatctccgaataccttgaaggcgtggattagaagatat
ggttggaaagatgaaaaagaaaagggtgcatccaaaacaaaaaaaatgggcgcacccttt
ggaaatgtaaacgcaaaagggaattcgggcggtggggcacctttaggcaataaaaacgcg
ataggtaactctggcgggggtgcaccctttggtaataagaatgcactttttacaggagag
ttcgaaattattgatcctgattactttagcgatgaagaaaaaaaaatatacaattctctg
acagaccaccccctagcccacgctaataatatcattaaagatgaatatattcggaaaaga
agaatgatgaaacgactaaacgaattagaaaataatttgtcggagtctgaaaaagagata
aaaaaagcttacttaaaacaagatataagaaaagttattgaaagagacggacagaaagca
attatgacagttcctgagctagtacttgttgaacaaaaagaagaaactaaacgtaagata
gatgatgttttacggctagaagaatctattacaagacaaaacggtgttttacttagagca
ttgagagacaagtctgcaataattgctcagctatctatgctaccgctcaatcaagaaaaa
acacaaaaagaaatcgaaatgctagaactcgaaatacaagagcttaaaggtatagactta
gaaaaaccgcttgaaattagagtctcaagggcggtgaagaaacttggtagaagctaa


  DNA with Flanking Sequence

>fig|272626.9.peg.1298 Phage terminase, small subunit
cttaaatgatgatttattagatttagagataactaaagctcttgaagaagctaaaacaga
tgaagaatacaaaaaaattattcgagctacgctggggaagtggcttaataatctacaaga
aggcaatatacgtcttgaatctgtaaatgaccttaaaaccctcattgaagcagatagatt
actaagaagagattaacttttattgaaagattggagaataaacatgacccttatattttg
gactaaaaatggacaagagatggaatttgatctagttgaaaatgtagagattgacgagaa
aattattacattcgattactatggagaaggtgaaaaaagaggcgtagtgtttatattaaa
taatcttgctggcatggctgtagaggatgagaattcggagagtgaaagtaaagatggtgc
atcttggtttaaagtgtacaggggttaagtaaagtaaaaacgaacataaacataagtaat
ggtggtgacgttgatgtgtcatggataacctagataaagagctcataaaaaaagactatt
tggcaggaatgaagaacaaagaaatagtagaaaaatatggcatatctccgaataccttga
aggcgtggattagaagatatggttggaaagatgaaaaagaaaagggtgcatccaaaacaa
aaaaaatgggcgcaccctttggaaatgtaaacgcaaaagggaattcgggcggtggggcac
ctttaggcaataaaaacgcgataggtaactctggcgggggtgcaccctttggtaataaga
atgcactttttacaggagagttcgaaattattgatcctgattactttagcgatgaagaaa
aaaaaatatacaattctctgacagaccaccccctagcccacgctaataatatcattaaag
atgaatatattcggaaaagaagaatgatgaaacgactaaacgaattagaaaataatttgt
cggagtctgaaaaagagataaaaaaagcttacttaaaacaagatataagaaaagttattg
aaagagacggacagaaagcaattatgacagttcctgagctagtacttgttgaacaaaaag
aagaaactaaacgtaagatagatgatgttttacggctagaagaatctattacaagacaaa
acggtgttttacttagagcattgagagacaagtctgcaataattgctcagctatctatgc
taccgctcaatcaagaaaaaacacaaaaagaaatcgaaatgctagaactcgaaatacaag
agcttaaaggtatagacttagaaaaaccgcttgaaattagagtctcaagggcggtgaaga
aacttggtagaagctaatgtagttgatttagtcgttaaccctcattttgaggagtacgta
tttgattggacacaaaaaacatttcttgctgtaggtgcttatggttcgagtaaaagctat
gcaacagctgaaaaaattataataaaattatttgaagaaaaacgaaaatgcttagttgtt
agggatgttcacgaatcgcacaaggattctactttcgctttattaactgaaatccttgag
gaaatgggtgttgttgggagaggtaaaaggaaagttgtaattactcaaagtcctatgaaa
ataaaatttcctaatgggtcatccataatttttaaaggattggataaacctagtaagtta
aagtctatagctaatatttctattatttgggtagaagagtgctcagagattagttatgct
gcatacaaagaacttttaggacggttaagacatccgtttttaaaaacacatattatttta
acttcaaaccctgtcagtatagataattgggtctatt


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
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  Functional Coupling

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  Attributes

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  Protein Families

No protein families found

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