Protein Page for fig|272626.9.peg.1294

SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov

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Protein fig|272626.9.peg.1294: Listeria innocua Clip11262

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NCBI Taxonomy Id: 272626

Current Assignment: Phage DNA modification methylase

Translate Function Assignments

Context on contig NC_003212 from base 1262385 to 1275102 (12718 bp)


Fid	Start	End	Size (nt)		Gap	SS	Function	Aliases
1286	1262385	1263065	681	+			FIG00775669: hypothetical protein	locus\|lin1255, protein_id\|NP_470592.1, gi\|16800324, geneID\|1129823
1287	1263062	1263355	294	+	-4		hypothetical protein	locus\|lin1256, protein_id\|NP_470593.1, gi\|16800325, geneID\|1129825
1288	1263491	1263643	153	+	135		hypothetical protein
1289	1264293	1263766	528	-	122		conserved hypothetical protein	locus\|lin1257, protein_id\|NP_470594.1, gi\|16800326, geneID\|1129826
1290	1264362	1264922	561	+	68		FIG00774160: hypothetical protein	locus\|lin1258, protein_id\|NP_470595.1, gi\|16800327, geneID\|1129827
1291	1265003	1265425	423	+	80		hypothetical protein	locus\|lin1259, protein_id\|NP_470596.1, gi\|16800328, geneID\|1129828
1292	1265438	1266205	768	+	12		Phage antirepressor protein	locus\|lin1260, protein_id\|NP_470597.1, gi\|16800329, geneID\|1129829
1293	1266855	1267334	480	+	649		hypothetical protein	locus\|lin1261, protein_id\|NP_470598.1, gi\|16800330, geneID\|1129831
1294	1267399	1268736	1338	+	64	1: 1	Phage DNA modification methylase	locus\|lin1262, protein_id\|NP_470599.1, gi\|16800331, geneID\|1129832
1295	1268784	1268981	198	+	47		hypothetical protein	locus\|lin1263, protein_id\|NP_470600.1, gi\|16800332, geneID\|1129833
1296	1269111	1269341	231	+	129		FIG00774828: hypothetical protein	locus\|lin1264, protein_id\|NP_470601.1, gi\|16800333, geneID\|1129834
1297	1269369	1269593	225	+	27		hypothetical protein	locus\|lin1265, protein_id\|NP_470602.1, gi\|16800334, geneID\|1129835
1298	1269646	1270482	837	+	52		Phage terminase, small subunit	locus\|lin1266, protein_id\|NP_470603.1, gi\|16800335, geneID\|1129836
1299	1270469	1271803	1335	+	-14		Phage terminase, large subunit ## PBSX family	locus\|lin1267, protein_id\|NP_470604.1, gi\|16800336, geneID\|1129838
1300	1271793	1273367	1575	+	-11		Phage-like element PBSX protein XkdE	locus\|lin1268, protein_id\|NP_470605.1, gi\|16800337, geneID\|1129840
1301	1273354	1275102	1749	+	-14		Phage minor capsid protein	locus\|lin1269, protein_id\|NP_470606.1, gi\|16800338, geneID\|1129842

Annotation History / View All Related Annotations

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Subsystems in Which This Protein Plays a Role


Subsystem	Curator	Role
DGQHR-like	Joseph_Jennifer_user	Adenine-specific methyltransferase (EC 2.1.1.72)

Protein Sequence

>fig|272626.9.peg.1294 Phage DNA modification methylase
MIIKEIEVSKINPAPYNPRMDLQPNDPEYQKLKKSIEEFGYIDPLIWNKKTGNLVGGHQR
FKILLEENPERLTVSVVDLDINQEKALNIALNKIEGGWSTDKLGELLKSINDEEMLNLTG
FSALEIDELIKEFELPPATVDKVKENPLDSNLFESFLFPPFSYLDSKTKRWRDRKDQWKN
LGIRSELGREGNLTFASSLRSASLTGTSIFDPVLCELAYRWFTPGESAKIYDPFAGGSVR
GIVAKVLGHEYTGIDLRKEQVEANRINAKEIGLDGINWITDNSLNADKHIEDNSMDLLFT
CPPYFDLEVYSDNKEDISNMEYEEFIKVYSEILAKGANKLKDNRFAIVVISDVRDKAGFY
RDLTGLTKSVFEKNGIYFYNDLILLNSLGSGALRARRNMRNRKLVRIHQNVLVFYKGNPD
EIQEHFPILEVLEDNLEEALESIDI

MD5 = 5720530b0e17e3d51609f4f0a2737604

DNA Sequence

>fig|272626.9.peg.1294 Phage DNA modification methylase
atgattatcaaagaaatagaagtaagcaaaattaacccagcaccatacaatccgagaatg
gatttacagccaaacgatccagaatatcaaaaattaaaaaaatcaattgaagagtttggc
tatatcgatccgttaatctggaacaagaaaactggtaatttggttggtggccatcagcgt
tttaaaattttacttgaggaaaatccggaaaggttgactgtatcagtagttgaccttgat
ataaatcaagagaaagcattgaatattgctttaaataaaatagaaggcggatggagtact
gataaattaggcgaattactaaaaagcattaatgatgaagaaatgctaaatttaacagga
ttctcagcacttgaaatagatgaattaattaaagaattcgaattacctccagctactgtg
gataaagtaaaagaaaacccgttagactcgaatctgttcgagtcttttttgtttcctcct
ttttcgtatttagattcaaaaacaaagaggtggagggataggaaggaccaatggaaaaat
ttagggattagaagcgaattaggtcgagaaggtaatctcacgtttgcatctagcttgcgg
tcagcaagtttgacaggaacgagtattttcgaccccgtactttgcgagttggcttacaga
tggtttactcctggagaatctgccaaaatatacgatccattcgctggcggctctgttcgg
ggtattgtggcaaaagtgcttggccacgaatatactggaattgatttaagaaaagaacaa
gtagaagctaaccgcattaatgctaaagaaatcggattagatggcattaattggattacc
gataatagcttaaacgcggataaacatattgaagataactcgatggacttattatttaca
tgcccaccttactttgatttagaagtatattcagataataaagaagacattagcaacatg
gaatacgaggaatttattaaagtgtactccgagatattggcgaagggtgcgaataaatta
aaagataatcgatttgccattgtggttatttcagatgtacgagataaagcaggtttttat
agagatttgacaggtcttactaaatcggtatttgagaagaatggtatttacttctataat
gacttgattttgttaaactcactaggctcaggagcattaagagctcgcagaaatatgcgt
aacaggaagttagtccgtattcaccagaatgttttagtgttttataaaggaaatcctgat
gagatacaagaacatttccccattttagaggtactggaagataatttagaagaagcgctt
gaatctatcgacatttaa

DNA with Flanking Sequence

>fig|272626.9.peg.1294 Phage DNA modification methylase
attactagcggttggaacgtcattgtatttggctaacaggaaccccaagaaaaaattatt
agtttcacatgaaattaaagagataggaactttagcaacggtttctgattataacataga
aacattagttgtaactgtcgcaaacttggaaattacttcagtacaaataagagatttatt
ttttgtttcagaatcaatacgaataaaattaccactaagtgcgctggttggttttgctgc
aatgggtaaaactactccatgcgttgttgatccattttcagaagttaggttcttggtgat
ttataatgattttcaaagtctgttaaaagaaaaaaatgcaagaggaatcattacggggga
aatattggttgtagatgaatcaaataaaaagcatagagataaagtcaaattaactattga
agttgttgatatgtaaatatcattagtggaaaaagagctagaagagccaataaggctctt
tttttattggaggaaataaaatgattatcaaagaaatagaagtaagcaaaattaacccag
caccatacaatccgagaatggatttacagccaaacgatccagaatatcaaaaattaaaaa
aatcaattgaagagtttggctatatcgatccgttaatctggaacaagaaaactggtaatt
tggttggtggccatcagcgttttaaaattttacttgaggaaaatccggaaaggttgactg
tatcagtagttgaccttgatataaatcaagagaaagcattgaatattgctttaaataaaa
tagaaggcggatggagtactgataaattaggcgaattactaaaaagcattaatgatgaag
aaatgctaaatttaacaggattctcagcacttgaaatagatgaattaattaaagaattcg
aattacctccagctactgtggataaagtaaaagaaaacccgttagactcgaatctgttcg
agtcttttttgtttcctcctttttcgtatttagattcaaaaacaaagaggtggagggata
ggaaggaccaatggaaaaatttagggattagaagcgaattaggtcgagaaggtaatctca
cgtttgcatctagcttgcggtcagcaagtttgacaggaacgagtattttcgaccccgtac
tttgcgagttggcttacagatggtttactcctggagaatctgccaaaatatacgatccat
tcgctggcggctctgttcggggtattgtggcaaaagtgcttggccacgaatatactggaa
ttgatttaagaaaagaacaagtagaagctaaccgcattaatgctaaagaaatcggattag
atggcattaattggattaccgataatagcttaaacgcggataaacatattgaagataact
cgatggacttattatttacatgcccaccttactttgatttagaagtatattcagataata
aagaagacattagcaacatggaatacgaggaatttattaaagtgtactccgagatattgg
cgaagggtgcgaataaattaaaagataatcgatttgccattgtggttatttcagatgtac
gagataaagcaggtttttatagagatttgacaggtcttactaaatcggtatttgagaaga
atggtatttacttctataatgacttgattttgttaaactcactaggctcaggagcattaa
gagctcgcagaaatatgcgtaacaggaagttagtccgtattcaccagaatgttttagtgt
tttataaaggaaatcctgatgagatacaagaacatttccccattttagaggtactggaag
ataatttagaagaagcgcttgaatctatcgacatttaaacgtatatcccttacagtaaca
gcataaaggaaacggagtggtgtacatgagagaagatattcaacgattaaaagataaagc
ggacacagctaaaatgaaatatcatcgaaatataattgatagagaaacagctaagaaaca
aataattccatacgcggaagcttttaatactagatcgaaagagattgctaaaaagtataa
tcaaaagcctaaattactttcagtagcagcgtttttaagataaaaaagaagaggtgcgtt
aacaccccttcccatagagccatcactggccatgagatagcaaacagacctcgcgaggtt
ttagacattgctatctctttttctattctaatagaaagctggtgaaaaggcaatgaaaaa
ggagaacgagcgttcggttgatgggaacttaaatgatgatttattagatttagagataac
taaagctcttgaagaagctaaaacagatgaagaatacaaaaaaattattcgagctacg

Assignments for Essentially Identical Proteins


Id	Organism	Who	Assignment
GO:0003677			F:DNA binding
cmr\|NT01LI1315	Listeria innocua CLIP 11262		DNA methylase
emb\|CAC96493.1	Listeria innocua	EMBL	lin1262
fig\|272626.1.peg.1252	Listeria innocua Clip11262	FIG	Phage DNA modification methylase
gi\|16413736	Listeria innocua	NCBI	lin1262
gi\|16800331	Listeria innocua Clip11262	NCBI	hypothetical protein lin1262
img\|637223990	Listeria innocua Clip11262	IMG	hypothetical protein
kegg\|lin:lin1262	Listeria innocua CLIP 11262 (serotype 6a)	KEGG	hypothetical protein
ref\|NP_470599.1	Listeria innocua Clip11262	RefSeq	hypothetical protein lin1262
tr\|Q92CC6	Listeria innocua	TrEMBL	Lin1262 protein

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Functional Coupling


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