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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|272626.9.peg.1292: Listeria innocua Clip11262

This feature in The SEED Viewer

NCBI Taxonomy Id: 272626

Current Assignment: Phage antirepressor protein
Translate Function Assignments


Context on contig NC_003212 from base 1259830 to 1271803 (11974 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
1283 1259830 1261191 1362 +           FIG00776219: hypothetical protein locus|lin1253, protein_id|NP_470590.1, gi|16800322, geneID|1129821
1284 1261204 1261428 225 + 12         hypothetical protein  
1285 1261428 1262372 945 + -1         Phage integrase locus|lin1254, protein_id|NP_470591.1, gi|16800323, geneID|1129822
1286 1262385 1263065 681 + 12         FIG00775669: hypothetical protein locus|lin1255, protein_id|NP_470592.1, gi|16800324, geneID|1129823
1287 1263062 1263355 294 + -4         hypothetical protein locus|lin1256, protein_id|NP_470593.1, gi|16800325, geneID|1129825
1288 1263491 1263643 153 + 135         hypothetical protein  
1289 1264293 1263766 528 - 122         conserved hypothetical protein locus|lin1257, protein_id|NP_470594.1, gi|16800326, geneID|1129826
1290 1264362 1264922 561 + 68         FIG00774160: hypothetical protein locus|lin1258, protein_id|NP_470595.1, gi|16800327, geneID|1129827
1291 1265003 1265425 423 + 80         hypothetical protein locus|lin1259, protein_id|NP_470596.1, gi|16800328, geneID|1129828
1292 1265438 1266205 768 + 12         Phage antirepressor protein locus|lin1260, protein_id|NP_470597.1, gi|16800329, geneID|1129829
1293 1266855 1267334 480 + 649         hypothetical protein locus|lin1261, protein_id|NP_470598.1, gi|16800330, geneID|1129831
1294 1267399 1268736 1338 + 64     1: 1   Phage DNA modification methylase locus|lin1262, protein_id|NP_470599.1, gi|16800331, geneID|1129832
1295 1268784 1268981 198 + 47         hypothetical protein locus|lin1263, protein_id|NP_470600.1, gi|16800332, geneID|1129833
1296 1269111 1269341 231 + 129         FIG00774828: hypothetical protein locus|lin1264, protein_id|NP_470601.1, gi|16800333, geneID|1129834
1297 1269369 1269593 225 + 27         hypothetical protein locus|lin1265, protein_id|NP_470602.1, gi|16800334, geneID|1129835
1298 1269646 1270482 837 + 52         Phage terminase, small subunit locus|lin1266, protein_id|NP_470603.1, gi|16800335, geneID|1129836
1299 1270469 1271803 1335 + -14         Phage terminase, large subunit ## PBSX family locus|lin1267, protein_id|NP_470604.1, gi|16800336, geneID|1129838

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|272626.9.peg.1292 Phage antirepressor protein
MNNLAVLDKNNTLNSREVAEMVEKRHSDLLRDIETYIRYINQNAKLRSDDFFSESTYQAG
TGKDYKCYEITKMGCEMIANKLTGAKGIQFTALFVQKFNKLEEKEMQTFYIPGTYAEALT
LAAKQAELNEQLMLENEVKTQTIAEYEPKVSYYDQILKSPGLITVTQIAADYDLTAHKLN
KILYEEQVQHKVGGQWILYKKHMNLGLTKSETVSIVHSNGRLGTKVNTKWTQKGRLFIHE
ILEKVGIQAVIDKDI

MD5 = aac38711c23e6421fca6a50e36ce0062


  DNA Sequence

>fig|272626.9.peg.1292 Phage antirepressor protein
atgaataatttagcagtattagataaaaataatacattaaacagtcgtgaagttgctgaa
atggtagaaaaaaggcactctgatttactacgtgatatcgaaacttatattagatatatc
aatcaaaacgcaaaactgcgttctgatgattttttcagtgaatctacttatcaagctggc
accgggaaagattataagtgctatgaaatcacaaaaatgggctgtgaaatgatagccaat
aaattaactggggcaaaaggcattcagtttacagctttatttgtacaaaagttcaacaag
ttagaagaaaaagaaatgcaaactttttatattccaggaacctacgcagaagcacttaca
cttgcagcaaaacaagctgaactaaatgagcagttaatgttagaaaatgaagtgaaaaca
caaactatagccgaatatgaaccaaaagtgagttattatgatcagattttaaaatctcct
ggattaataactgttacgcaaattgcagctgactatgacttgaccgcacataagctcaat
aaaatattatacgaagagcaggtgcagcataaagttggtgggcagtggatattatacaaa
aaacatatgaatttaggtttgactaaatcagaaacggtcagcatagttcatagtaatgga
cgtctaggaacaaaagtaaacaccaagtggacacaaaaagggagattatttatacatgaa
attcttgaaaaagttggaattcaggctgttatcgacaaggatatttaa


  DNA with Flanking Sequence

>fig|272626.9.peg.1292 Phage antirepressor protein
ccgctccggcgtggaatgtgattcctagacaaaatcattataccacaatggaggggttgc
gtgtgatggcgctgttcgaactaccgcaaattaacaatgttagaacaaaaagaaacgtaa
taagagctttagaaaaatataaaattatgagagttagactcggcgagagaagaatgccaa
agttaacttctacattgaccatagtgccaccatcatttaataatgaattccattctacga
cagaagaaagtgcaatatggaatgtagatgcagtaaatgaagcaaaagcatatgttaaat
tgattgatcatcacatcaaccaacttcctgaacggagtaggcaagtgatactaactaaat
tcattgaagaaaatagtgattatgaagctatgttggccatacatgtaagtcactcgcagt
acaaagaagaaaagagaaaagcaattgaacgcctagcctatcagcttaatatagtagttg
aaaaatgaggagggaacacaatgaataatttagcagtattagataaaaataatacattaa
acagtcgtgaagttgctgaaatggtagaaaaaaggcactctgatttactacgtgatatcg
aaacttatattagatatatcaatcaaaacgcaaaactgcgttctgatgattttttcagtg
aatctacttatcaagctggcaccgggaaagattataagtgctatgaaatcacaaaaatgg
gctgtgaaatgatagccaataaattaactggggcaaaaggcattcagtttacagctttat
ttgtacaaaagttcaacaagttagaagaaaaagaaatgcaaactttttatattccaggaa
cctacgcagaagcacttacacttgcagcaaaacaagctgaactaaatgagcagttaatgt
tagaaaatgaagtgaaaacacaaactatagccgaatatgaaccaaaagtgagttattatg
atcagattttaaaatctcctggattaataactgttacgcaaattgcagctgactatgact
tgaccgcacataagctcaataaaatattatacgaagagcaggtgcagcataaagttggtg
ggcagtggatattatacaaaaaacatatgaatttaggtttgactaaatcagaaacggtca
gcatagttcatagtaatggacgtctaggaacaaaagtaaacaccaagtggacacaaaaag
ggagattatttatacatgaaattcttgaaaaagttggaattcaggctgttatcgacaagg
atatttaaaaaatcggctttttaccggataaaattaaactttttgctgactttttaccgg
atttttaccggacaaaaaacaaggaattctgtggtaagatgttattgtcaagaaaataag
aaataggagctggtaattatgaaacatgaaatgactaaatatagcatggacggaaaacga
tatgtatcatcgtggctacaggtaaatatttttggcaaggcattatgctttaatcataaa
tcaatcgcaatttaaaaatatataatttgccgagaaagaggcattgtatcttatcgttgg
tctgatatgagacgcatcatatccaacactcgtggcggaataggtagacgcattggaggt
aagaactaatatggtcaaggagcgtaagccttagcttaagaaacctatagcaaaaattac
ttagttcatgcaaggtgcaaatccttgccgagtgcttttaacgtcaatacctccataccc
ccagggcagatacgttctgatatggagt


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
GO:0003677       F:DNA binding
cmr|NT01LI1312 Listeria innocua CLIP 11262     bacteriophage L54a, antirepressor, putative
emb|CAC96491.1 Listeria innocua EMBL   lin1260
fig|272626.1.peg.1250 Listeria innocua Clip11262 FIG   Phage antirepressor protein
gi|16413734 Listeria innocua NCBI   lin1260
gi|16800329 Listeria innocua Clip11262 NCBI   hypothetical protein lin1260
img|637223988 Listeria innocua Clip11262 IMG   hypothetical protein
kegg|lin:lin1260 Listeria innocua CLIP 11262 (serotype 6a) KEGG   hypothetical protein
ref|NP_470597.1 Listeria innocua Clip11262 RefSeq   hypothetical protein lin1260
tr|Q92CC8 Listeria innocua TrEMBL   Lin1260 protein


  Links to Related Entries in Other Sites

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  Functional Coupling

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  Attributes

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  Protein Families

No protein families found

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