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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|272626.9.peg.1289: Listeria innocua Clip11262

This feature in The SEED Viewer

NCBI Taxonomy Id: 272626

Current Assignment: conserved hypothetical protein
Translate Function Assignments


Context on contig NC_003212 from base 1258225 to 1269341 (11117 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
1279 1258225 1258845 621 +           FIG00775176: hypothetical protein locus|lin1249, protein_id|NP_470586.1, gi|16800318, geneID|1129816
1280 1258886 1259263 378 + 40         FIG00775670: hypothetical protein locus|lin1250, protein_id|NP_470587.1, gi|16800319, geneID|1129817
1281 1259223 1259399 177 + -41         FIG00774198: hypothetical protein locus|lin1251, protein_id|NP_470588.1, gi|16800320, geneID|1129819
1282 1259411 1259833 423 + 11         FIG00775219: hypothetical protein locus|lin1252, protein_id|NP_470589.1, gi|16800321, geneID|1129820
1283 1259830 1261191 1362 + -4         FIG00776219: hypothetical protein locus|lin1253, protein_id|NP_470590.1, gi|16800322, geneID|1129821
1284 1261204 1261428 225 + 12         hypothetical protein  
1285 1261428 1262372 945 + -1         Phage integrase locus|lin1254, protein_id|NP_470591.1, gi|16800323, geneID|1129822
1286 1262385 1263065 681 + 12         FIG00775669: hypothetical protein locus|lin1255, protein_id|NP_470592.1, gi|16800324, geneID|1129823
1287 1263062 1263355 294 + -4         hypothetical protein locus|lin1256, protein_id|NP_470593.1, gi|16800325, geneID|1129825
1288 1263491 1263643 153 + 135         hypothetical protein  
1289 1264293 1263766 528 - 122         conserved hypothetical protein locus|lin1257, protein_id|NP_470594.1, gi|16800326, geneID|1129826
1290 1264362 1264922 561 + 68         FIG00774160: hypothetical protein locus|lin1258, protein_id|NP_470595.1, gi|16800327, geneID|1129827
1291 1265003 1265425 423 + 80         hypothetical protein locus|lin1259, protein_id|NP_470596.1, gi|16800328, geneID|1129828
1292 1265438 1266205 768 + 12         Phage antirepressor protein locus|lin1260, protein_id|NP_470597.1, gi|16800329, geneID|1129829
1293 1266855 1267334 480 + 649         hypothetical protein locus|lin1261, protein_id|NP_470598.1, gi|16800330, geneID|1129831
1294 1267399 1268736 1338 + 64     1: 1   Phage DNA modification methylase locus|lin1262, protein_id|NP_470599.1, gi|16800331, geneID|1129832
1295 1268784 1268981 198 + 47         hypothetical protein locus|lin1263, protein_id|NP_470600.1, gi|16800332, geneID|1129833
1296 1269111 1269341 231 + 129         FIG00774828: hypothetical protein locus|lin1264, protein_id|NP_470601.1, gi|16800333, geneID|1129834

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|272626.9.peg.1289 conserved hypothetical protein
MTISDWIQILSIIATLIISIVSIVIASKSLKLTKTSIESANRPYVTCYLDMVTVGHFQKY
LIIKNFGSSPAIIKDISFIGEPAFKNRADLDSLNETTIAPNQKFIILFDKKAPDKSIISV
IISYQDLLGNFYKEVFQLNPNFSKDIVYASARNSKDSEESYILKNTLHEYTKSNL

MD5 = 04665172255969b6ccc93fc60394d840


  DNA Sequence

>fig|272626.9.peg.1289 conserved hypothetical protein
atgacaatatctgattggatacaaatcttaagcattattgctacgttaattatttctatc
gtatcaatcgtaattgcttcaaaatctttaaagttaacaaaaacatcaatagaaagtgct
aatcgtccctatgttacatgttatttagatatggttactgttggtcatttccagaaatac
ttaatcattaaaaattttgggtcatcgccagcaattatcaaagacataagttttattgga
gaacccgcttttaaaaatagggctgacttagactcattgaatgaaacaacaatagctccc
aaccaaaaatttattattctctttgacaaaaaagcacctgacaaatccataatatcggtt
attattagttaccaagatttacttgggaatttttataaagaagtatttcaattaaatcca
aatttctctaaagatatagtatacgcgtcagcaagaaactcaaaagatagtgaagaaagt
tatattcttaaaaatactcttcatgaatatactaaaagcaatctttaa


  DNA with Flanking Sequence

>fig|272626.9.peg.1289 conserved hypothetical protein
tgatttactgtgatcataatttcttctatctctaccttggccaatggcatctacatgatg
tatttcgcctctatgacctgttacagcgcattttctgtatttgatacataagaacaggta
tctattgatatcatccgtcatttgcagtcctggcgatgataacggtatatcaaattgaaa
acaaaactctataatggaacttatgaagtcacgggcttgtattttcgataatttcgctgt
actgaaatcacccggtaaattcgcttcaactgcatacgccacttttaaagtttctttgac
aacttgacaatcattgctgaaactcctcggctttgtagcttcaaaatcgttataggtgtg
ctttactatgtcactaatcaaagcatgaatcattttgttttgtcttaatgttcgcctttc
ttgcatatacattctgtcaccatctttcaataactatttcaaaactttggtataataaaa
ataaaaaggtggaactgataatgacaatatctgattggatacaaatcttaagcattattg
ctacgttaattatttctatcgtatcaatcgtaattgcttcaaaatctttaaagttaacaa
aaacatcaatagaaagtgctaatcgtccctatgttacatgttatttagatatggttactg
ttggtcatttccagaaatacttaatcattaaaaattttgggtcatcgccagcaattatca
aagacataagttttattggagaacccgcttttaaaaatagggctgacttagactcattga
atgaaacaacaatagctcccaaccaaaaatttattattctctttgacaaaaaagcacctg
acaaatccataatatcggttattattagttaccaagatttacttgggaatttttataaag
aagtatttcaattaaatccaaatttctctaaagatatagtatacgcgtcagcaagaaact
caaaagatagtgaagaaagttatattcttaaaaatactcttcatgaatatactaaaagca
atctttaatatacgattatttgtattactgcgacatgtattactcatatgtcgcagtttt
ttgaaaatattacttttcatatatctttcaccaaaatatgccatcaatgcataattaacc
ttttcttcagctatttttttattagctgcttttttcttgtttctcgatgtactatttcca
ttcgatcattaagattttttactactaaccaattttctggattaagaccattacttttta
tcatcgtcgcttgatttctagttaactttttaccgtttttcattattatcttcctcgcaa
tcttcgcatgttctcggatatcccggatttacatcatcaatgaatactccgcaattccta
cacaaaataccctctaaaatcatttcagttgtttcactcatataatcgtcctcctatctc
aaattaaatcggaatcaagcagtaaaattttattgttgacagtttcataaaaaccttgtt
ttatttcttcctctgtttcatattcttg


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
cmr|NT01LI1309 Listeria innocua CLIP 11262     hypothetical protein
emb|CAC96488.1 Listeria innocua EMBL   lin1257
fig|272626.1.peg.1247 Listeria innocua Clip11262 FIG   conserved hypothetical protein
gi|16413731 Listeria innocua NCBI   lin1257
gi|16800326 Listeria innocua Clip11262 NCBI   hypothetical protein lin1257
img|637223985 Listeria innocua Clip11262 IMG   hypothetical protein
kegg|lin:lin1257 Listeria innocua CLIP 11262 (serotype 6a) KEGG   hypothetical protein
ref|NP_470594.1 Listeria innocua Clip11262 RefSeq   hypothetical protein lin1257
tr|Q92CD0 Listeria innocua TrEMBL   Lin1257 protein


  Links to Related Entries in Other Sites

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  Functional Coupling

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  Attributes

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  Protein Families

No protein families found

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