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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
 The SEED


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Protein fig|272626.9.peg.1286: Listeria innocua Clip11262

This feature in The SEED Viewer

NCBI Taxonomy Id: 272626

Current Assignment: FIG00775669: hypothetical protein
Translate Function Assignments


Context on contig NC_003212 from base 1257362 to 1268736 (11375 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
1276 1257362 1257589 228 +           FIG00775663: hypothetical protein locus|lin1246, protein_id|NP_470583.1, gi|16800315, geneID|1129811
1277 1257576 1257785 210 + -14         FIG00774865: hypothetical protein locus|lin1247, protein_id|NP_470584.1, gi|16800316, geneID|1129813
1278 1257766 1258203 438 + -20         Phage-encoded crossover junction endodeoxyribonuclease RusA (EC 3.1.22.4) locus|lin1248, protein_id|NP_470585.1, gi|16800317, geneID|1129815
1279 1258225 1258845 621 + 21         FIG00775176: hypothetical protein locus|lin1249, protein_id|NP_470586.1, gi|16800318, geneID|1129816
1280 1258886 1259263 378 + 40         FIG00775670: hypothetical protein locus|lin1250, protein_id|NP_470587.1, gi|16800319, geneID|1129817
1281 1259223 1259399 177 + -41         FIG00774198: hypothetical protein locus|lin1251, protein_id|NP_470588.1, gi|16800320, geneID|1129819
1282 1259411 1259833 423 + 11         FIG00775219: hypothetical protein locus|lin1252, protein_id|NP_470589.1, gi|16800321, geneID|1129820
1283 1259830 1261191 1362 + -4         FIG00776219: hypothetical protein locus|lin1253, protein_id|NP_470590.1, gi|16800322, geneID|1129821
1284 1261204 1261428 225 + 12         hypothetical protein  
1285 1261428 1262372 945 + -1         Phage integrase locus|lin1254, protein_id|NP_470591.1, gi|16800323, geneID|1129822
1286 1262385 1263065 681 + 12         FIG00775669: hypothetical protein locus|lin1255, protein_id|NP_470592.1, gi|16800324, geneID|1129823
1287 1263062 1263355 294 + -4         hypothetical protein locus|lin1256, protein_id|NP_470593.1, gi|16800325, geneID|1129825
1288 1263491 1263643 153 + 135         hypothetical protein  
1289 1264293 1263766 528 - 122         conserved hypothetical protein locus|lin1257, protein_id|NP_470594.1, gi|16800326, geneID|1129826
1290 1264362 1264922 561 + 68         FIG00774160: hypothetical protein locus|lin1258, protein_id|NP_470595.1, gi|16800327, geneID|1129827
1291 1265003 1265425 423 + 80         hypothetical protein locus|lin1259, protein_id|NP_470596.1, gi|16800328, geneID|1129828
1292 1265438 1266205 768 + 12         Phage antirepressor protein locus|lin1260, protein_id|NP_470597.1, gi|16800329, geneID|1129829
1293 1266855 1267334 480 + 649         hypothetical protein locus|lin1261, protein_id|NP_470598.1, gi|16800330, geneID|1129831
1294 1267399 1268736 1338 + 64     1: 1   Phage DNA modification methylase locus|lin1262, protein_id|NP_470599.1, gi|16800331, geneID|1129832

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|272626.9.peg.1286 FIG00775669: hypothetical protein
MRKNWTDEEIRVLQNNYEYVDTEIIANFLNRSYHSIKNKATRLGISKNSEWTEDEDIYLK
YFVYENDDDISKAAEFLGRTKDAVINRLVKLRKRDSSVSFIRRPWTEKEDEILKKNYIIM
SNAQFAERLRRTKASVAGRKVLLGLTNKHMSKEDDKIIRHLGNQGYTIKEISAEMNLSYC
LVKNYIRNHRINYRRESKNGMNGWRKEADATYSLYINAKKIKEGQA

MD5 = a7f5e14906c006eccfc88f55023e3212


  DNA Sequence

>fig|272626.9.peg.1286 FIG00775669: hypothetical protein
atgcgaaaaaattggacggatgaggaaatcagagttttacagaataattacgaatacgta
gacactgagataatagctaattttttaaatcgctcatatcattcaataaaaaacaaagcg
acgcgacttggaataagtaaaaactcggagtggacagaggatgaggatatttatttaaag
tattttgtttatgaaaacgacgacgatattagcaaagctgcagaatttttaggacgtaca
aaagatgcagttataaacagactagtgaagttaagaaaaagagattcttcagtttctttt
attaggcgtccgtggacagaaaaagaagatgagatactaaaaaaaaattatattattatg
tcaaatgcccaattcgctgaacgattaagaagaacgaaagcctctgtagcaggaagaaag
gtactgttaggactgacaaacaaacacatgtctaaagaagatgacaaaataattcgtcat
cttggaaatcaagggtacacaatcaaagagatctcagcagaaatgaatttgtcttattgc
ttagttaaaaactatataagaaatcaccgaatcaattatagaagggaatcaaaaaacggg
atgaacggttggcgaaaagaggcagatgcgacatattcgctttatattaacgctaaaaaa
atcaaggagggccaagcatga


  DNA with Flanking Sequence

>fig|272626.9.peg.1286 FIG00775669: hypothetical protein
aggcattggcgctaactccatcggattttgactgggtaaatgccactgtaacaattgata
aatcttgggattataaaactcacagagggtttaaaaaaactaaatcgacggcttccgata
gagaaatagctattgattggcaaatcgttgggcagttcaaaccattaattcaagatttgc
cagctaatgacccgatttttatagagaagacagaacgaggaacatataaaaaacagtata
actcaacaatgaacaattatttagaagcgaaatgtaagacattaactataacagtgataa
gtttacacgcccttcgacacacacatgcaagcgtactgcttgctgaaggtgtttcgattc
atacgatttcagcgcgattagggcatgccgatgtaggtgtcacgcaagaaatatacgcac
atgttttagacgagttgcaaaagaaagatgatcaaaaaatgatgtctgttttaatgcaaa
ttgcgtagcgaggtgattagatgcgaaaaaattggacggatgaggaaatcagagttttac
agaataattacgaatacgtagacactgagataatagctaattttttaaatcgctcatatc
attcaataaaaaacaaagcgacgcgacttggaataagtaaaaactcggagtggacagagg
atgaggatatttatttaaagtattttgtttatgaaaacgacgacgatattagcaaagctg
cagaatttttaggacgtacaaaagatgcagttataaacagactagtgaagttaagaaaaa
gagattcttcagtttcttttattaggcgtccgtggacagaaaaagaagatgagatactaa
aaaaaaattatattattatgtcaaatgcccaattcgctgaacgattaagaagaacgaaag
cctctgtagcaggaagaaaggtactgttaggactgacaaacaaacacatgtctaaagaag
atgacaaaataattcgtcatcttggaaatcaagggtacacaatcaaagagatctcagcag
aaatgaatttgtcttattgcttagttaaaaactatataagaaatcaccgaatcaattata
gaagggaatcaaaaaacgggatgaacggttggcgaaaagaggcagatgcgacatattcgc
tttatattaacgctaaaaaaatcaaggagggccaagcatgattaaatacttcgaatacac
aagaagagaaaactatctttatgcattaattaaagcagaaagcaaaaaacaagctgattt
tatttattggcgtgatgttgttaagtgcgaagaagaatttgcaagaactggactaataac
agaattcaatgccgttgaattaacagagaaaaaagcgttaaaactcttcatgtcatcttt
gcaagaatatgaaacagaggaagaaataaaacaaggtttttatgaaactgtcaacaataa
aattttactgcttgattccgatttaatttgagataggaggacgattatatgagtgaaaca
actgaaatgattttagagggtattttgtgtaggaattgcggagtattcattgatgatgta
aatccgggatatccgagaacatgcgaagattgcgaggaagataataatgaaaaacggtaa
aaagttaactagaaatcaagcgacgatgataaaaagtaatggtcttaatccagaaaattg
g


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
GO:0003677       F:DNA binding
cmr|NT01LI1305 Listeria innocua CLIP 11262     Helix-turn-helix domain, fis-type protein
cmr|NT01LI1812 Listeria innocua CLIP 11262     Helix-turn-helix domain, fis-type protein
emb|CAC96486.1 Listeria innocua EMBL   lin1255
emb|CAC96973.1 Listeria innocua EMBL   lin1742
fig|272626.1.peg.1245 Listeria innocua Clip11262 FIG   FIG00775669: hypothetical protein
fig|272626.1.peg.1731 Listeria innocua Clip11262 FIG   FIG00775669: hypothetical protein
fig|272626.9.peg.1783 Listeria innocua Clip11262 FIG   FIG00775669: hypothetical protein
fig|330397.2.peg.65 Siphoviridae Listeria phage B054 FIG   FIG00775669: hypothetical protein
gb|AAY53170.1 Listeria phage B054     gp65
gi|157325349 Listeria phage B054 NCBI   gp65
gi|16413729 Listeria innocua NCBI   lin1255
gi|16414229 Listeria innocua NCBI   lin1742
gi|16800324 Listeria innocua Clip11262 NCBI   hypothetical protein lin1255
gi|16800810 Listeria innocua Clip11262 NCBI   hypothetical protein lin1742
gi|20140651 organism not parsed/found in ncbi nr NCBI   RecName: Full=Uncharacterized protein Lin1255/Lin1742
gi|66733354 Listeria phage B054 NCBI   gp65
img|637223983 Listeria innocua Clip11262 IMG   hypothetical protein
img|637224469 Listeria innocua Clip11262 IMG   hypothetical protein
img|641510146 Listeria phage B054 IMG   gp65
kegg|lin:lin1255 Listeria innocua CLIP 11262 (serotype 6a) KEGG   hypothetical protein
kegg|lin:lin1742 Listeria innocua CLIP 11262 (serotype 6a) KEGG   hypothetical protein
ref|NP_470592.1 Listeria innocua Clip11262 RefSeq   hypothetical protein lin1255
ref|NP_471078.1 Listeria innocua Clip11262 RefSeq   hypothetical protein lin1742
ref|YP_001468769.1 Listeria phage B054 RefSeq   gp65
sp|Q926A7 Listeria innocua SwissProt   RecName: Full=Uncharacterized protein Lin1255/Lin1742
sp|Y1255_LISIN organism not parsed/found in ncbi nr SwissProt   RecName: Full=Uncharacterized protein Lin1255/Lin1742
tr|A8ATM3 Listeria phage B054 TrEMBL   Gp65


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  Attributes

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  Protein Families

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