The SEED: an Annotation/Analysis Tool Provided by FIG
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Fid | Start | End | Size (nt) |
Gap | Find best clusters |
Pins | Fc-sc | SS | Ev | Function | Aliases | |
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1276 | 1257362 | 1257589 | 228 | + | ![]() |
FIG00775663: hypothetical protein | locus|lin1246, protein_id|NP_470583.1, gi|16800315, geneID|1129811 | |||||
1277 | 1257576 | 1257785 | 210 | + | -14 | ![]() |
FIG00774865: hypothetical protein | locus|lin1247, protein_id|NP_470584.1, gi|16800316, geneID|1129813 | ||||
1278 | 1257766 | 1258203 | 438 | + | -20 | ![]() |
Phage-encoded crossover junction endodeoxyribonuclease RusA (EC 3.1.22.4) | locus|lin1248, protein_id|NP_470585.1, gi|16800317, geneID|1129815 | ||||
1279 | 1258225 | 1258845 | 621 | + | 21 | ![]() |
FIG00775176: hypothetical protein | locus|lin1249, protein_id|NP_470586.1, gi|16800318, geneID|1129816 | ||||
1280 | 1258886 | 1259263 | 378 | + | 40 | ![]() |
FIG00775670: hypothetical protein | locus|lin1250, protein_id|NP_470587.1, gi|16800319, geneID|1129817 | ||||
1281 | 1259223 | 1259399 | 177 | + | -41 | ![]() |
FIG00774198: hypothetical protein | locus|lin1251, protein_id|NP_470588.1, gi|16800320, geneID|1129819 | ||||
1282 | 1259411 | 1259833 | 423 | + | 11 | ![]() |
FIG00775219: hypothetical protein | locus|lin1252, protein_id|NP_470589.1, gi|16800321, geneID|1129820 | ||||
1283 | 1259830 | 1261191 | 1362 | + | -4 | ![]() |
FIG00776219: hypothetical protein | locus|lin1253, protein_id|NP_470590.1, gi|16800322, geneID|1129821 | ||||
1284 | 1261204 | 1261428 | 225 | + | 12 | ![]() |
hypothetical protein | |||||
1285 | 1261428 | 1262372 | 945 | + | -1 | ![]() |
Phage integrase | locus|lin1254, protein_id|NP_470591.1, gi|16800323, geneID|1129822 | ||||
1286 | 1262385 | 1263065 | 681 | + | 12 | ![]() |
FIG00775669: hypothetical protein | locus|lin1255, protein_id|NP_470592.1, gi|16800324, geneID|1129823 | ||||
1287 | 1263062 | 1263355 | 294 | + | -4 | ![]() |
hypothetical protein | locus|lin1256, protein_id|NP_470593.1, gi|16800325, geneID|1129825 | ||||
1288 | 1263491 | 1263643 | 153 | + | 135 | ![]() |
hypothetical protein | |||||
1289 | 1264293 | 1263766 | 528 | - | 122 | ![]() |
conserved hypothetical protein | locus|lin1257, protein_id|NP_470594.1, gi|16800326, geneID|1129826 | ||||
1290 | 1264362 | 1264922 | 561 | + | 68 | ![]() |
FIG00774160: hypothetical protein | locus|lin1258, protein_id|NP_470595.1, gi|16800327, geneID|1129827 | ||||
1291 | 1265003 | 1265425 | 423 | + | 80 | ![]() |
hypothetical protein | locus|lin1259, protein_id|NP_470596.1, gi|16800328, geneID|1129828 | ||||
1292 | 1265438 | 1266205 | 768 | + | 12 | ![]() |
Phage antirepressor protein | locus|lin1260, protein_id|NP_470597.1, gi|16800329, geneID|1129829 | ||||
1293 | 1266855 | 1267334 | 480 | + | 649 | ![]() |
hypothetical protein | locus|lin1261, protein_id|NP_470598.1, gi|16800330, geneID|1129831 | ||||
1294 | 1267399 | 1268736 | 1338 | + | 64 | ![]() |
1: 1 | Phage DNA modification methylase | locus|lin1262, protein_id|NP_470599.1, gi|16800331, geneID|1129832 |
Annotation History / View All Related Annotations | Help on Annotations |
Id | Organism | Who | ASSIGN | Assignment |
---|---|---|---|---|
GO:0003677 | F:DNA binding | |||
cmr|NT01LI1305 | Listeria innocua CLIP 11262 | Helix-turn-helix domain, fis-type protein | ||
cmr|NT01LI1812 | Listeria innocua CLIP 11262 | Helix-turn-helix domain, fis-type protein | ||
emb|CAC96486.1 | Listeria innocua | EMBL | lin1255 | |
emb|CAC96973.1 | Listeria innocua | EMBL | lin1742 | |
fig|272626.1.peg.1245 | Listeria innocua Clip11262 | FIG | FIG00775669: hypothetical protein | |
fig|272626.1.peg.1731 | Listeria innocua Clip11262 | FIG | FIG00775669: hypothetical protein | |
fig|272626.9.peg.1783 | Listeria innocua Clip11262 | FIG | FIG00775669: hypothetical protein | |
fig|330397.2.peg.65 | Siphoviridae Listeria phage B054 | FIG | FIG00775669: hypothetical protein | |
gb|AAY53170.1 | Listeria phage B054 | gp65 | ||
gi|157325349 | Listeria phage B054 | NCBI | gp65 | |
gi|16413729 | Listeria innocua | NCBI | lin1255 | |
gi|16414229 | Listeria innocua | NCBI | lin1742 | |
gi|16800324 | Listeria innocua Clip11262 | NCBI | hypothetical protein lin1255 | |
gi|16800810 | Listeria innocua Clip11262 | NCBI | hypothetical protein lin1742 | |
gi|20140651 | organism not parsed/found in ncbi nr | NCBI | RecName: Full=Uncharacterized protein Lin1255/Lin1742 | |
gi|66733354 | Listeria phage B054 | NCBI | gp65 | |
img|637223983 | Listeria innocua Clip11262 | IMG | hypothetical protein | |
img|637224469 | Listeria innocua Clip11262 | IMG | hypothetical protein | |
img|641510146 | Listeria phage B054 | IMG | gp65 | |
kegg|lin:lin1255 | Listeria innocua CLIP 11262 (serotype 6a) | KEGG | hypothetical protein | |
kegg|lin:lin1742 | Listeria innocua CLIP 11262 (serotype 6a) | KEGG | hypothetical protein | |
ref|NP_470592.1 | Listeria innocua Clip11262 | RefSeq | hypothetical protein lin1255 | |
ref|NP_471078.1 | Listeria innocua Clip11262 | RefSeq | hypothetical protein lin1742 | |
ref|YP_001468769.1 | Listeria phage B054 | RefSeq | gp65 | |
sp|Q926A7 | Listeria innocua | SwissProt | RecName: Full=Uncharacterized protein Lin1255/Lin1742 | |
sp|Y1255_LISIN | organism not parsed/found in ncbi nr | SwissProt | RecName: Full=Uncharacterized protein Lin1255/Lin1742 | |
tr|A8ATM3 | Listeria phage B054 | TrEMBL | Gp65 |
Score | Peg | Function |
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Key Link Explains Key |
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| Psi-Blast | TMpred | TMHMM | Gram negative PSORT | Gram negative SignalP | Gram positive PSORT | Gram positive SignalP | LipoP | Radar | PPSearch | Gram negative CELLO | Gram positive CELLO | ProDom | PDB | RNAFold |
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