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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|272626.9.peg.1285: Listeria innocua Clip11262

This feature in The SEED Viewer

NCBI Taxonomy Id: 272626

Current Assignment: Phage integrase
Translate Function Assignments


Context on contig NC_003212 from base 1255528 to 1267334 (11807 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
1274 1255528 1256445 918 +           Phage replication initiation protein locus|lin1244, protein_id|NP_470581.1, gi|16800313, geneID|1129808
1275 1256576 1257184 609 + 130     1: 1   DNA replication protein DnaC locus|lin1245, protein_id|NP_470582.1, gi|16800314, geneID|1129810
1276 1257362 1257589 228 + 177         FIG00775663: hypothetical protein locus|lin1246, protein_id|NP_470583.1, gi|16800315, geneID|1129811
1277 1257576 1257785 210 + -14         FIG00774865: hypothetical protein locus|lin1247, protein_id|NP_470584.1, gi|16800316, geneID|1129813
1278 1257766 1258203 438 + -20         Phage-encoded crossover junction endodeoxyribonuclease RusA (EC 3.1.22.4) locus|lin1248, protein_id|NP_470585.1, gi|16800317, geneID|1129815
1279 1258225 1258845 621 + 21         FIG00775176: hypothetical protein locus|lin1249, protein_id|NP_470586.1, gi|16800318, geneID|1129816
1280 1258886 1259263 378 + 40         FIG00775670: hypothetical protein locus|lin1250, protein_id|NP_470587.1, gi|16800319, geneID|1129817
1281 1259223 1259399 177 + -41         FIG00774198: hypothetical protein locus|lin1251, protein_id|NP_470588.1, gi|16800320, geneID|1129819
1282 1259411 1259833 423 + 11         FIG00775219: hypothetical protein locus|lin1252, protein_id|NP_470589.1, gi|16800321, geneID|1129820
1283 1259830 1261191 1362 + -4         FIG00776219: hypothetical protein locus|lin1253, protein_id|NP_470590.1, gi|16800322, geneID|1129821
1284 1261204 1261428 225 + 12         hypothetical protein  
1285 1261428 1262372 945 + -1         Phage integrase locus|lin1254, protein_id|NP_470591.1, gi|16800323, geneID|1129822
1286 1262385 1263065 681 + 12         FIG00775669: hypothetical protein locus|lin1255, protein_id|NP_470592.1, gi|16800324, geneID|1129823
1287 1263062 1263355 294 + -4         hypothetical protein locus|lin1256, protein_id|NP_470593.1, gi|16800325, geneID|1129825
1288 1263491 1263643 153 + 135         hypothetical protein  
1289 1264293 1263766 528 - 122         conserved hypothetical protein locus|lin1257, protein_id|NP_470594.1, gi|16800326, geneID|1129826
1290 1264362 1264922 561 + 68         FIG00774160: hypothetical protein locus|lin1258, protein_id|NP_470595.1, gi|16800327, geneID|1129827
1291 1265003 1265425 423 + 80         hypothetical protein locus|lin1259, protein_id|NP_470596.1, gi|16800328, geneID|1129828
1292 1265438 1266205 768 + 12         Phage antirepressor protein locus|lin1260, protein_id|NP_470597.1, gi|16800329, geneID|1129829
1293 1266855 1267334 480 + 649         hypothetical protein locus|lin1261, protein_id|NP_470598.1, gi|16800330, geneID|1129831

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|272626.9.peg.1285 Phage integrase
MAKKKKEILFCDYYEDWVETYKVGAIEDVTLNKYYVAARQLRDICPKLLMSDFSRKDYQL
IMNEYGKTHEKQTAKDFHHHIKAAILDAYHDGLLKSDPTYRAVIKGKEPGKKKVKFLQKE
ELRTLLQSLDLQSGINNDWFLLLIAKTGMRYAEALALTPSDFDWVNATVTIDKSWDYKTH
RGFKKTKSTASDREIAIDWQIVGQFKPLIQDLPANDPIFIEKTERGTYKKQYNSTMNNYL
EAKCKTLTITVISLHALRHTHASVLLAEGVSIHTISARLGHADVGVTQEIYAHVLDELQK
KDDQKMMSVLMQIA

MD5 = 69d4091a631b4e82fa546a4c2675770c


  DNA Sequence

>fig|272626.9.peg.1285 Phage integrase
atggctaagaagaaaaaagaaatactattttgtgattattatgaggactgggttgagact
tacaaggtaggagctattgaagacgttacgctaaacaaatattatgtggcagcaagacaa
ctacgcgatatttgcccaaaattattgatgtctgattttagcaggaaagattatcaatta
atcatgaatgaatatggaaaaacacatgaaaagcaaaccgctaaagatttccaccatcac
ataaaagcagctattttagatgcttaccacgatgggttactgaaaagcgatccaacttat
agggcggttatcaaaggaaaagaaccaggtaaaaagaaagttaaatttctccagaaagaa
gaattgagaaccttattgcaatctttggatttacaaagtggcattaataatgattggttt
ctcctgctgattgcaaaaacaggtatgcgttatgcggaggcattggcgctaactccatcg
gattttgactgggtaaatgccactgtaacaattgataaatcttgggattataaaactcac
agagggtttaaaaaaactaaatcgacggcttccgatagagaaatagctattgattggcaa
atcgttgggcagttcaaaccattaattcaagatttgccagctaatgacccgatttttata
gagaagacagaacgaggaacatataaaaaacagtataactcaacaatgaacaattattta
gaagcgaaatgtaagacattaactataacagtgataagtttacacgcccttcgacacaca
catgcaagcgtactgcttgctgaaggtgtttcgattcatacgatttcagcgcgattaggg
catgccgatgtaggtgtcacgcaagaaatatacgcacatgttttagacgagttgcaaaag
aaagatgatcaaaaaatgatgtctgttttaatgcaaattgcgtag


  DNA with Flanking Sequence

>fig|272626.9.peg.1285 Phage integrase
ttattaacagaaggcaaagcattaagtcattgtgtgggtggtagtaattatattaaacaa
cacattgaagggaaaacaacgattatttttgttcgtgataagcagtacttagaaaagtca
ttgtatacacttgaatacaaaaatggccaaatttaccaactgagaggtaagcacaattgt
gagccaacccacgatgtgcaagaggctgcaaacaactgggctgcatcagtaaaaagtaaa
acaaaggtattacaacatagttgaggaggagtaaatatgaaaccggaattaaatgagtta
aaaaaagctaattacagaattaggcaagaagctgcggatgaaccgcgaattatccaagta
tggtgtccttattgctgggaagaaaacagatttaattttgaggaactcaaaaaaaactat
ggtccggaaccacgttggcttaaacataaaaaaataacgtgtcataagtgtgcaactgag
atggaatttggtgattgctgatggctaagaagaaaaaagaaatactattttgtgattatt
atgaggactgggttgagacttacaaggtaggagctattgaagacgttacgctaaacaaat
attatgtggcagcaagacaactacgcgatatttgcccaaaattattgatgtctgatttta
gcaggaaagattatcaattaatcatgaatgaatatggaaaaacacatgaaaagcaaaccg
ctaaagatttccaccatcacataaaagcagctattttagatgcttaccacgatgggttac
tgaaaagcgatccaacttatagggcggttatcaaaggaaaagaaccaggtaaaaagaaag
ttaaatttctccagaaagaagaattgagaaccttattgcaatctttggatttacaaagtg
gcattaataatgattggtttctcctgctgattgcaaaaacaggtatgcgttatgcggagg
cattggcgctaactccatcggattttgactgggtaaatgccactgtaacaattgataaat
cttgggattataaaactcacagagggtttaaaaaaactaaatcgacggcttccgatagag
aaatagctattgattggcaaatcgttgggcagttcaaaccattaattcaagatttgccag
ctaatgacccgatttttatagagaagacagaacgaggaacatataaaaaacagtataact
caacaatgaacaattatttagaagcgaaatgtaagacattaactataacagtgataagtt
tacacgcccttcgacacacacatgcaagcgtactgcttgctgaaggtgtttcgattcata
cgatttcagcgcgattagggcatgccgatgtaggtgtcacgcaagaaatatacgcacatg
ttttagacgagttgcaaaagaaagatgatcaaaaaatgatgtctgttttaatgcaaattg
cgtagcgaggtgattagatgcgaaaaaattggacggatgaggaaatcagagttttacaga
ataattacgaatacgtagacactgagataatagctaattttttaaatcgctcatatcatt
caataaaaaacaaagcgacgcgacttggaataagtaaaaactcggagtggacagaggatg
aggatatttatttaaagtattttgtttatgaaaacgacgacgatattagcaaagctgcag
aatttttaggacgtacaaaagatgcagttataaacagactagtgaagttaagaaaaagag
attcttcagtttcttttattaggcgtccgtggacagaaaaagaagatgagatactaaaaa
aaaattatattattatgtcaaatgcccaattcgctgaacgattaagaagaacgaaagcct
ctgtagcaggaagaaaggtactgttaggactgacaaacaaacacatgtctaaagaagatg
acaaaataattcgtcatcttggaaa


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

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  Functional Coupling

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  Attributes

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  Protein Families

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