The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
 The SEED


FIG search

Protein fig|272626.9.peg.1285: Listeria innocua Clip11262

This feature in The SEED Viewer

NCBI Taxonomy Id: 272626

Current Assignment: Phage integrase
Translate Function Assignments


Context on contig NC_003212 from base 1255528 to 1267334 (11807 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
1274 1255528 1256445 918 +           Phage replication initiation protein locus|lin1244, protein_id|NP_470581.1, gi|16800313, geneID|1129808
1275 1256576 1257184 609 + 130     1: 1   DNA replication protein DnaC locus|lin1245, protein_id|NP_470582.1, gi|16800314, geneID|1129810
1276 1257362 1257589 228 + 177         FIG00775663: hypothetical protein locus|lin1246, protein_id|NP_470583.1, gi|16800315, geneID|1129811
1277 1257576 1257785 210 + -14         FIG00774865: hypothetical protein locus|lin1247, protein_id|NP_470584.1, gi|16800316, geneID|1129813
1278 1257766 1258203 438 + -20         Phage-encoded crossover junction endodeoxyribonuclease RusA (EC 3.1.22.4) locus|lin1248, protein_id|NP_470585.1, gi|16800317, geneID|1129815
1279 1258225 1258845 621 + 21         FIG00775176: hypothetical protein locus|lin1249, protein_id|NP_470586.1, gi|16800318, geneID|1129816
1280 1258886 1259263 378 + 40         FIG00775670: hypothetical protein locus|lin1250, protein_id|NP_470587.1, gi|16800319, geneID|1129817
1281 1259223 1259399 177 + -41         FIG00774198: hypothetical protein locus|lin1251, protein_id|NP_470588.1, gi|16800320, geneID|1129819
1282 1259411 1259833 423 + 11         FIG00775219: hypothetical protein locus|lin1252, protein_id|NP_470589.1, gi|16800321, geneID|1129820
1283 1259830 1261191 1362 + -4         FIG00776219: hypothetical protein locus|lin1253, protein_id|NP_470590.1, gi|16800322, geneID|1129821
1284 1261204 1261428 225 + 12         hypothetical protein  
1285 1261428 1262372 945 + -1         Phage integrase locus|lin1254, protein_id|NP_470591.1, gi|16800323, geneID|1129822
1286 1262385 1263065 681 + 12         FIG00775669: hypothetical protein locus|lin1255, protein_id|NP_470592.1, gi|16800324, geneID|1129823
1287 1263062 1263355 294 + -4         hypothetical protein locus|lin1256, protein_id|NP_470593.1, gi|16800325, geneID|1129825
1288 1263491 1263643 153 + 135         hypothetical protein  
1289 1264293 1263766 528 - 122         conserved hypothetical protein locus|lin1257, protein_id|NP_470594.1, gi|16800326, geneID|1129826
1290 1264362 1264922 561 + 68         FIG00774160: hypothetical protein locus|lin1258, protein_id|NP_470595.1, gi|16800327, geneID|1129827
1291 1265003 1265425 423 + 80         hypothetical protein locus|lin1259, protein_id|NP_470596.1, gi|16800328, geneID|1129828
1292 1265438 1266205 768 + 12         Phage antirepressor protein locus|lin1260, protein_id|NP_470597.1, gi|16800329, geneID|1129829
1293 1266855 1267334 480 + 649         hypothetical protein locus|lin1261, protein_id|NP_470598.1, gi|16800330, geneID|1129831

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|272626.9.peg.1285 Phage integrase
MAKKKKEILFCDYYEDWVETYKVGAIEDVTLNKYYVAARQLRDICPKLLMSDFSRKDYQL
IMNEYGKTHEKQTAKDFHHHIKAAILDAYHDGLLKSDPTYRAVIKGKEPGKKKVKFLQKE
ELRTLLQSLDLQSGINNDWFLLLIAKTGMRYAEALALTPSDFDWVNATVTIDKSWDYKTH
RGFKKTKSTASDREIAIDWQIVGQFKPLIQDLPANDPIFIEKTERGTYKKQYNSTMNNYL
EAKCKTLTITVISLHALRHTHASVLLAEGVSIHTISARLGHADVGVTQEIYAHVLDELQK
KDDQKMMSVLMQIA

MD5 = 69d4091a631b4e82fa546a4c2675770c


  DNA Sequence

>fig|272626.9.peg.1285 Phage integrase
atggctaagaagaaaaaagaaatactattttgtgattattatgaggactgggttgagact
tacaaggtaggagctattgaagacgttacgctaaacaaatattatgtggcagcaagacaa
ctacgcgatatttgcccaaaattattgatgtctgattttagcaggaaagattatcaatta
atcatgaatgaatatggaaaaacacatgaaaagcaaaccgctaaagatttccaccatcac
ataaaagcagctattttagatgcttaccacgatgggttactgaaaagcgatccaacttat
agggcggttatcaaaggaaaagaaccaggtaaaaagaaagttaaatttctccagaaagaa
gaattgagaaccttattgcaatctttggatttacaaagtggcattaataatgattggttt
ctcctgctgattgcaaaaacaggtatgcgttatgcggaggcattggcgctaactccatcg
gattttgactgggtaaatgccactgtaacaattgataaatcttgggattataaaactcac
agagggtttaaaaaaactaaatcgacggcttccgatagagaaatagctattgattggcaa
atcgttgggcagttcaaaccattaattcaagatttgccagctaatgacccgatttttata
gagaagacagaacgaggaacatataaaaaacagtataactcaacaatgaacaattattta
gaagcgaaatgtaagacattaactataacagtgataagtttacacgcccttcgacacaca
catgcaagcgtactgcttgctgaaggtgtttcgattcatacgatttcagcgcgattaggg
catgccgatgtaggtgtcacgcaagaaatatacgcacatgttttagacgagttgcaaaag
aaagatgatcaaaaaatgatgtctgttttaatgcaaattgcgtag


  DNA with Flanking Sequence

>fig|272626.9.peg.1285 Phage integrase
ttattaacagaaggcaaagcattaagtcattgtgtgggtggtagtaattatattaaacaa
cacattgaagggaaaacaacgattatttttgttcgtgataagcagtacttagaaaagtca
ttgtatacacttgaatacaaaaatggccaaatttaccaactgagaggtaagcacaattgt
gagccaacccacgatgtgcaagaggctgcaaacaactgggctgcatcagtaaaaagtaaa
acaaaggtattacaacatagttgaggaggagtaaatatgaaaccggaattaaatgagtta
aaaaaagctaattacagaattaggcaagaagctgcggatgaaccgcgaattatccaagta
tggtgtccttattgctgggaagaaaacagatttaattttgaggaactcaaaaaaaactat
ggtccggaaccacgttggcttaaacataaaaaaataacgtgtcataagtgtgcaactgag
atggaatttggtgattgctgatggctaagaagaaaaaagaaatactattttgtgattatt
atgaggactgggttgagacttacaaggtaggagctattgaagacgttacgctaaacaaat
attatgtggcagcaagacaactacgcgatatttgcccaaaattattgatgtctgatttta
gcaggaaagattatcaattaatcatgaatgaatatggaaaaacacatgaaaagcaaaccg
ctaaagatttccaccatcacataaaagcagctattttagatgcttaccacgatgggttac
tgaaaagcgatccaacttatagggcggttatcaaaggaaaagaaccaggtaaaaagaaag
ttaaatttctccagaaagaagaattgagaaccttattgcaatctttggatttacaaagtg
gcattaataatgattggtttctcctgctgattgcaaaaacaggtatgcgttatgcggagg
cattggcgctaactccatcggattttgactgggtaaatgccactgtaacaattgataaat
cttgggattataaaactcacagagggtttaaaaaaactaaatcgacggcttccgatagag
aaatagctattgattggcaaatcgttgggcagttcaaaccattaattcaagatttgccag
ctaatgacccgatttttatagagaagacagaacgaggaacatataaaaaacagtataact
caacaatgaacaattatttagaagcgaaatgtaagacattaactataacagtgataagtt
tacacgcccttcgacacacacatgcaagcgtactgcttgctgaaggtgtttcgattcata
cgatttcagcgcgattagggcatgccgatgtaggtgtcacgcaagaaatatacgcacatg
ttttagacgagttgcaaaagaaagatgatcaaaaaatgatgtctgttttaatgcaaattg
cgtagcgaggtgattagatgcgaaaaaattggacggatgaggaaatcagagttttacaga
ataattacgaatacgtagacactgagataatagctaattttttaaatcgctcatatcatt
caataaaaaacaaagcgacgcgacttggaataagtaaaaactcggagtggacagaggatg
aggatatttatttaaagtattttgtttatgaaaacgacgacgatattagcaaagctgcag
aatttttaggacgtacaaaagatgcagttataaacagactagtgaagttaagaaaaagag
attcttcagtttcttttattaggcgtccgtggacagaaaaagaagatgagatactaaaaa
aaaattatattattatgtcaaatgcccaattcgctgaacgattaagaagaacgaaagcct
ctgtagcaggaagaaaggtactgttaggactgacaaacaaacacatgtctaaagaagatg
acaaaataattcgtcatcttggaaa


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
GO:0003677       F:DNA binding
GO:0006310       P:DNA recombination
GO:0015074       P:DNA integration
cmr|NT01LI1304 Listeria innocua CLIP 11262     integrase, phage family, putative
cmr|NT01LI1813 Listeria innocua CLIP 11262     integrase, phage family, putative
emb|CAC96485.1 Listeria innocua EMBL   lin1254
emb|CAC96974.1 Listeria innocua EMBL   lin1743
fig|272626.1.peg.1244 Listeria innocua Clip11262 FIG   Phage integrase
fig|272626.1.peg.1732 Listeria innocua Clip11262 FIG   Phage integrase
fig|272626.9.peg.1784 Listeria innocua Clip11262 FIG   Phage integrase
fig|330397.2.peg.64 Siphoviridae Listeria phage B054 FIG   Phage integrase
gb|AAY53169.1 Listeria phage B054     gp64
gi|157325348 Listeria phage B054 NCBI   gp64
gi|16413728 Listeria innocua NCBI   lin1254
gi|16414230 Listeria innocua NCBI   lin1743
gi|16800323 Listeria innocua Clip11262 NCBI   hypothetical protein lin1254
gi|16800811 Listeria innocua Clip11262 NCBI   hypothetical protein lin1743
gi|66733353 Listeria phage B054 NCBI   gp64
img|637223982 Listeria innocua Clip11262 IMG   hypothetical protein
img|637224470 Listeria innocua Clip11262 IMG   hypothetical protein
img|641510145 Listeria phage B054 IMG   gp64
kegg|lin:lin1254 Listeria innocua CLIP 11262 (serotype 6a) KEGG   hypothetical protein
kegg|lin:lin1743 Listeria innocua CLIP 11262 (serotype 6a) KEGG   hypothetical protein
ref|NP_470591.1 Listeria innocua Clip11262 RefSeq   hypothetical protein lin1254
ref|NP_471079.1 Listeria innocua Clip11262 RefSeq   hypothetical protein lin1743
ref|YP_001468768.1 Listeria phage B054 RefSeq   gp64
tr|A8ATM2 Listeria phage B054 TrEMBL   Gp64
tr|Q926A9 Listeria innocua TrEMBL   Lin1254 protein


  Links to Related Entries in Other Sites

This PEG has no links.
add a new link

  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key		 Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer

Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options

|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions
FIG search