The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
 The SEED


FIG search

Protein fig|272626.9.peg.1284: Listeria innocua Clip11262

This feature in The SEED Viewer

NCBI Taxonomy Id: 272626

Current Assignment: hypothetical protein
Turn Off Function Translation


Context on contig NC_003212 from base 1255528 to 1266205 (10678 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
1274 1255528 1256445 918 +           Phage replication initiation protein locus|lin1244, protein_id|NP_470581.1, gi|16800313, geneID|1129808
1275 1256576 1257184 609 + 130     1: 1   DNA replication protein DnaC locus|lin1245, protein_id|NP_470582.1, gi|16800314, geneID|1129810
1276 1257362 1257589 228 + 177         FIG00775663: hypothetical protein locus|lin1246, protein_id|NP_470583.1, gi|16800315, geneID|1129811
1277 1257576 1257785 210 + -14         FIG00774865: hypothetical protein locus|lin1247, protein_id|NP_470584.1, gi|16800316, geneID|1129813
1278 1257766 1258203 438 + -20         Phage-encoded crossover junction endodeoxyribonuclease RusA (EC 3.1.22.4) locus|lin1248, protein_id|NP_470585.1, gi|16800317, geneID|1129815
1279 1258225 1258845 621 + 21         FIG00775176: hypothetical protein locus|lin1249, protein_id|NP_470586.1, gi|16800318, geneID|1129816
1280 1258886 1259263 378 + 40         FIG00775670: hypothetical protein locus|lin1250, protein_id|NP_470587.1, gi|16800319, geneID|1129817
1281 1259223 1259399 177 + -41         FIG00774198: hypothetical protein locus|lin1251, protein_id|NP_470588.1, gi|16800320, geneID|1129819
1282 1259411 1259833 423 + 11         FIG00775219: hypothetical protein locus|lin1252, protein_id|NP_470589.1, gi|16800321, geneID|1129820
1283 1259830 1261191 1362 + -4         FIG00776219: hypothetical protein locus|lin1253, protein_id|NP_470590.1, gi|16800322, geneID|1129821
1284 1261204 1261428 225 + 12         hypothetical protein  
1285 1261428 1262372 945 + -1         Phage integrase locus|lin1254, protein_id|NP_470591.1, gi|16800323, geneID|1129822
1286 1262385 1263065 681 + 12         FIG00775669: hypothetical protein locus|lin1255, protein_id|NP_470592.1, gi|16800324, geneID|1129823
1287 1263062 1263355 294 + -4         hypothetical protein locus|lin1256, protein_id|NP_470593.1, gi|16800325, geneID|1129825
1288 1263491 1263643 153 + 135         hypothetical protein  
1289 1264293 1263766 528 - 122         conserved hypothetical protein locus|lin1257, protein_id|NP_470594.1, gi|16800326, geneID|1129826
1290 1264362 1264922 561 + 68         FIG00774160: hypothetical protein locus|lin1258, protein_id|NP_470595.1, gi|16800327, geneID|1129827
1291 1265003 1265425 423 + 80         hypothetical protein locus|lin1259, protein_id|NP_470596.1, gi|16800328, geneID|1129828
1292 1265438 1266205 768 + 12         Phage antirepressor protein locus|lin1260, protein_id|NP_470597.1, gi|16800329, geneID|1129829

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|272626.9.peg.1284 hypothetical protein
MKPELNELKKANYRIRQEAADEPRIIQVWCPYCWEENRFNFEELKKNYGPEPRWLKHKKI
TCHKCATEMEFGDC

MD5 = 577bce6cd1517e0415b0b10efa4955b3


  DNA Sequence

>fig|272626.9.peg.1284 hypothetical protein
atgaaaccggaattaaatgagttaaaaaaagctaattacagaattaggcaagaagctgcg
gatgaaccgcgaattatccaagtatggtgtccttattgctgggaagaaaacagatttaat
tttgaggaactcaaaaaaaactatggtccggaaccacgttggcttaaacataaaaaaata
acgtgtcataagtgtgcaactgagatggaatttggtgattgctga


  DNA with Flanking Sequence

>fig|272626.9.peg.1284 hypothetical protein
tggattatctaaacctaatgcgagacttaaatattgcaatcgatagcgaaaacataatta
tgcctaaaaatttagtaatagctcatgataacgcggtcaaattactgtaccaaatgaaac
atgaagttgaagaacaacaatataaaatgagatttgagaagataaaagacttagaaaaaa
cgatagataattacgcttttattgtccctaaacaagcttctgatttattaacagaaggca
aagcattaagtcattgtgtgggtggtagtaattatattaaacaacacattgaagggaaaa
caacgattatttttgttcgtgataagcagtacttagaaaagtcattgtatacacttgaat
acaaaaatggccaaatttaccaactgagaggtaagcacaattgtgagccaacccacgatg
tgcaagaggctgcaaacaactgggctgcatcagtaaaaagtaaaacaaaggtattacaac
atagttgaggaggagtaaatatgaaaccggaattaaatgagttaaaaaaagctaattaca
gaattaggcaagaagctgcggatgaaccgcgaattatccaagtatggtgtccttattgct
gggaagaaaacagatttaattttgaggaactcaaaaaaaactatggtccggaaccacgtt
ggcttaaacataaaaaaataacgtgtcataagtgtgcaactgagatggaatttggtgatt
gctgatggctaagaagaaaaaagaaatactattttgtgattattatgaggactgggttga
gacttacaaggtaggagctattgaagacgttacgctaaacaaatattatgtggcagcaag
acaactacgcgatatttgcccaaaattattgatgtctgattttagcaggaaagattatca
attaatcatgaatgaatatggaaaaacacatgaaaagcaaaccgctaaagatttccacca
tcacataaaagcagctattttagatgcttaccacgatgggttactgaaaagcgatccaac
ttatagggcggttatcaaaggaaaagaaccaggtaaaaagaaagttaaatttctccagaa
agaagaattgagaaccttattgcaatctttggatttacaaagtggcattaataatgattg
gtttctcctgctgattgcaaaaacaggtatgcgttatgcggaggcattggcgctaactcc
atcggattttgactgggtaaatgcc


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
add a new link

  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key		 Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer

Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options

|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions
FIG search