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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|272626.9.peg.1283: Listeria innocua Clip11262

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NCBI Taxonomy Id: 272626

Current Assignment: FIG00776219: hypothetical protein
Translate Function Assignments


Context on contig NC_003212 from base 1254779 to 1266205 (11427 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
1273 1254779 1255516 738 +       1: 2   Metallo-beta-lactamase superfamily domain protein in prophage locus|lin1243, protein_id|NP_470580.1, gi|16800312, geneID|1129807
1274 1255528 1256445 918 + 11         Phage replication initiation protein locus|lin1244, protein_id|NP_470581.1, gi|16800313, geneID|1129808
1275 1256576 1257184 609 + 130     1: 1   DNA replication protein DnaC locus|lin1245, protein_id|NP_470582.1, gi|16800314, geneID|1129810
1276 1257362 1257589 228 + 177         FIG00775663: hypothetical protein locus|lin1246, protein_id|NP_470583.1, gi|16800315, geneID|1129811
1277 1257576 1257785 210 + -14         FIG00774865: hypothetical protein locus|lin1247, protein_id|NP_470584.1, gi|16800316, geneID|1129813
1278 1257766 1258203 438 + -20         Phage-encoded crossover junction endodeoxyribonuclease RusA (EC 3.1.22.4) locus|lin1248, protein_id|NP_470585.1, gi|16800317, geneID|1129815
1279 1258225 1258845 621 + 21         FIG00775176: hypothetical protein locus|lin1249, protein_id|NP_470586.1, gi|16800318, geneID|1129816
1280 1258886 1259263 378 + 40         FIG00775670: hypothetical protein locus|lin1250, protein_id|NP_470587.1, gi|16800319, geneID|1129817
1281 1259223 1259399 177 + -41         FIG00774198: hypothetical protein locus|lin1251, protein_id|NP_470588.1, gi|16800320, geneID|1129819
1282 1259411 1259833 423 + 11         FIG00775219: hypothetical protein locus|lin1252, protein_id|NP_470589.1, gi|16800321, geneID|1129820
1283 1259830 1261191 1362 + -4         FIG00776219: hypothetical protein locus|lin1253, protein_id|NP_470590.1, gi|16800322, geneID|1129821
1284 1261204 1261428 225 + 12         hypothetical protein  
1285 1261428 1262372 945 + -1         Phage integrase locus|lin1254, protein_id|NP_470591.1, gi|16800323, geneID|1129822
1286 1262385 1263065 681 + 12         FIG00775669: hypothetical protein locus|lin1255, protein_id|NP_470592.1, gi|16800324, geneID|1129823
1287 1263062 1263355 294 + -4         hypothetical protein locus|lin1256, protein_id|NP_470593.1, gi|16800325, geneID|1129825
1288 1263491 1263643 153 + 135         hypothetical protein  
1289 1264293 1263766 528 - 122         conserved hypothetical protein locus|lin1257, protein_id|NP_470594.1, gi|16800326, geneID|1129826
1290 1264362 1264922 561 + 68         FIG00774160: hypothetical protein locus|lin1258, protein_id|NP_470595.1, gi|16800327, geneID|1129827
1291 1265003 1265425 423 + 80         hypothetical protein locus|lin1259, protein_id|NP_470596.1, gi|16800328, geneID|1129828
1292 1265438 1266205 768 + 12         Phage antirepressor protein locus|lin1260, protein_id|NP_470597.1, gi|16800329, geneID|1129829

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|272626.9.peg.1283 FIG00776219: hypothetical protein
MKREARNYIDNKLKPPKAFFDWCFSQIPTYKWSNKKETILASNRKNCSVIEQKLRKNSRL
TFFGKLNVFGIVLVTSKRIEIQSYAFWNRVVEGKEMIEFDLVNFEQFADGEHVKVAISDG
KMWFGLIPIYGGMSGGPYSMIRLFENDWKEKIRSKSELKYLEIPHLDFKEIETIYKYRVE
IEFLQKIKARQLSKEVMYPVTQYTNGSFRKTVDMRTINAKWLKENKPFFKNSDRGFMEFE
LARRIQKRRGKVVSGIEKYLDYRAINKIPEGVGIVRFQNWIIKNKVDFSYYLDYLNLMRD
LNIAIDSENIIMPKNLVIAHDNAVKLLYQMKHEVEEQQYKMRFEKIKDLEKTIDNYAFIV
PKQASDLLTEGKALSHCVGGSNYIKQHIEGKTTIIFVRDKQYLEKSLYTLEYKNGQIYQL
RGKHNCEPTHDVQEAANNWAASVKSKTKVLQHS

MD5 = c6b1bf65177a7622f7bdbf9e1efb2e09


  DNA Sequence

>fig|272626.9.peg.1283 FIG00776219: hypothetical protein
atgaagagagaagcacgaaattatattgataataaattaaagccaccaaaagcctttttt
gactggtgtttctcacaaattccaacttacaaatggtccaacaaaaaagaaactattcta
gcttccaatcgaaaaaactgcagtgttattgaacagaagttaagaaaaaattctagattg
acattttttggtaaattgaacgtgttcggtattgtcttagttacatcgaaaagaattgag
atacaaagttacgcgttctggaatcgagtagtggaaggaaaagaaatgattgaatttgat
ctagtcaattttgaacaatttgctgatggagaacacgtaaaggttgccatcagcgacggc
aagatgtggtttggtttaattccaatatatggtgggatgtctggaggtccttactcaatg
attcgattgtttgaaaatgactggaaagaaaaaattcgaagtaaatcagagcttaagtac
ctagaaataccgcacttagactttaaagaaattgaaactatatataaatatagagttgaa
attgaatttttgcagaaaattaaagcaagacaattgtccaaggaagttatgtatcccgta
acacaatatacaaatggatcgtttagaaaaacggtagatatgcggacaattaatgcgaag
tggttgaaagaaaacaagcctttctttaagaactcggacagaggttttatggaatttgaa
ttagcaagaagaatacagaaacggcgaggaaaggtagtttctggaattgaaaaatatctt
gattaccgtgctatcaacaaaatcccagaaggagtaggaatagttcgctttcagaattgg
atcattaagaataaagtggattttagctactatctggattatctaaacctaatgcgagac
ttaaatattgcaatcgatagcgaaaacataattatgcctaaaaatttagtaatagctcat
gataacgcggtcaaattactgtaccaaatgaaacatgaagttgaagaacaacaatataaa
atgagatttgagaagataaaagacttagaaaaaacgatagataattacgcttttattgtc
cctaaacaagcttctgatttattaacagaaggcaaagcattaagtcattgtgtgggtggt
agtaattatattaaacaacacattgaagggaaaacaacgattatttttgttcgtgataag
cagtacttagaaaagtcattgtatacacttgaatacaaaaatggccaaatttaccaactg
agaggtaagcacaattgtgagccaacccacgatgtgcaagaggctgcaaacaactgggct
gcatcagtaaaaagtaaaacaaaggtattacaacatagttga


  DNA with Flanking Sequence

>fig|272626.9.peg.1283 FIG00776219: hypothetical protein
agcattaaaaatgacagatacagaagtcgatttgacttttaacgagatgcggatggagtt
agatagttaggaggaaggataatgacaactattggaatgttaagcataaaagagcaagca
ctcaataaaatgttaacggaaatgaatgagaaacactcaggagctgaagatgcagtacat
aattggctctgtactcaagaagaagaagcgatttttgaaggtattctgaaagatgataga
agcattagtggggcggttaaatactgctcctcaagggcttcaaagcatcaggctgaaggc
gtggccatgattgatgacaaaacggtcttttcctgggtgaaaaagtattttatatcagaa
aaagtgccgaaaagtagtgtaaaggctacagttaaaacaactgcaacaaaaccagaaaaa
gcgaaggttaaagctaaggaaaaaccgaaaaaaacaactgcgcaagaagggtatgagcaa
ttagatttgcttgatttcttatgaagagagaagcacgaaattatattgataataaattaa
agccaccaaaagccttttttgactggtgtttctcacaaattccaacttacaaatggtcca
acaaaaaagaaactattctagcttccaatcgaaaaaactgcagtgttattgaacagaagt
taagaaaaaattctagattgacattttttggtaaattgaacgtgttcggtattgtcttag
ttacatcgaaaagaattgagatacaaagttacgcgttctggaatcgagtagtggaaggaa
aagaaatgattgaatttgatctagtcaattttgaacaatttgctgatggagaacacgtaa
aggttgccatcagcgacggcaagatgtggtttggtttaattccaatatatggtgggatgt
ctggaggtccttactcaatgattcgattgtttgaaaatgactggaaagaaaaaattcgaa
gtaaatcagagcttaagtacctagaaataccgcacttagactttaaagaaattgaaacta
tatataaatatagagttgaaattgaatttttgcagaaaattaaagcaagacaattgtcca
aggaagttatgtatcccgtaacacaatatacaaatggatcgtttagaaaaacggtagata
tgcggacaattaatgcgaagtggttgaaagaaaacaagcctttctttaagaactcggaca
gaggttttatggaatttgaattagcaagaagaatacagaaacggcgaggaaaggtagttt
ctggaattgaaaaatatcttgattaccgtgctatcaacaaaatcccagaaggagtaggaa
tagttcgctttcagaattggatcattaagaataaagtggattttagctactatctggatt
atctaaacctaatgcgagacttaaatattgcaatcgatagcgaaaacataattatgccta
aaaatttagtaatagctcatgataacgcggtcaaattactgtaccaaatgaaacatgaag
ttgaagaacaacaatataaaatgagatttgagaagataaaagacttagaaaaaacgatag
ataattacgcttttattgtccctaaacaagcttctgatttattaacagaaggcaaagcat
taagtcattgtgtgggtggtagtaattatattaaacaacacattgaagggaaaacaacga
ttatttttgttcgtgataagcagtacttagaaaagtcattgtatacacttgaatacaaaa
atggccaaatttaccaactgagaggtaagcacaattgtgagccaacccacgatgtgcaag
aggctgcaaacaactgggctgcatcagtaaaaagtaaaacaaaggtattacaacatagtt
gaggaggagtaaatatgaaaccggaattaaatgagttaaaaaaagctaattacagaatta
ggcaagaagctgcggatgaaccgcgaattatccaagtatggtgtccttattgctgggaag
aaaacagatttaattttgaggaactcaaaaaaaactatggtccggaaccacgttggctta
aacataaaaaaataacgtgtcataagtgtgcaactgagatggaatttggtgattgctgat
ggctaagaagaaaaaagaaatactattttgtgattattatgaggactgggttgagactta
caaggtaggagctattgaagacgttacgctaaacaaatattatgtggcagcaagacaact
acgcgatatttgcccaaaattattgatgtctgattttagcaggaaagattatcaattaat
catgaatgaatatggaaaaacacatgaaaagcaaaccgctaaagatttccaccatcacat
aaaagcagctattttagatgct


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
cmr|NT01LI1302 Listeria innocua CLIP 11262     conserved hypothetical protein
cmr|NT01LI1815 Listeria innocua CLIP 11262     conserved hypothetical protein
emb|CAC96484.1 Listeria innocua EMBL   lin1253
emb|CAC96975.1 Listeria innocua EMBL   lin1744
fig|272626.1.peg.1243 Listeria innocua Clip11262 FIG   FIG00776219: hypothetical protein
fig|272626.1.peg.1733 Listeria innocua Clip11262 FIG   FIG00776219: hypothetical protein
fig|272626.9.peg.1786 Listeria innocua Clip11262 FIG   FIG00776219: hypothetical protein
gi|16413727 Listeria innocua NCBI   lin1253
gi|16414231 Listeria innocua NCBI   lin1744
gi|16800322 Listeria innocua Clip11262 NCBI   hypothetical protein lin1253
gi|16800812 Listeria innocua Clip11262 NCBI   hypothetical protein lin1744
gi|20140646 organism not parsed/found in ncbi nr NCBI   RecName: Full=Uncharacterized protein Lin1253/Lin1744
img|637223981 Listeria innocua Clip11262 IMG   hypothetical protein
img|637224471 Listeria innocua Clip11262 IMG   hypothetical protein
kegg|lin:lin1253 Listeria innocua CLIP 11262 (serotype 6a) KEGG   hypothetical protein
kegg|lin:lin1744 Listeria innocua CLIP 11262 (serotype 6a) KEGG   hypothetical protein
ref|NP_470590.1 Listeria innocua Clip11262 RefSeq   hypothetical protein lin1253
ref|NP_471080.1 Listeria innocua Clip11262 RefSeq   hypothetical protein lin1744
sp|Q925W4 Listeria innocua SwissProt   RecName: Full=Uncharacterized protein Lin1253/Lin1744
sp|Y1253_LISIN organism not parsed/found in ncbi nr SwissProt   RecName: Full=Uncharacterized protein Lin1253/Lin1744


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  Functional Coupling

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  Attributes

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Key
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  Protein Families

No protein families found

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