The SEED: an Annotation/Analysis Tool Provided by FIG
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Fid | Start | End | Size (nt) |
Gap | Find best clusters |
Pins | Fc-sc | SS | Ev | Function | Aliases | |
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1906 | 2365289 | 2360796 | 4494 | - | ![]() |
4: 4 2 3 6 | Glutamate synthase [NADPH] large chain (EC 1.4.1.13) | gene_name|gltA_2, locus|PRU_1960, protein_id|YP_003575239.1, gi|294674623, geneID|9001491 | ||||
1907 | 2365780 | 2365445 | 336 | - | 155 | ![]() |
1: 1 | hypothetical protein | locus|PRU_1961, protein_id|YP_003575240.1, gi|294674624, geneID|9000232 | |||
1908 | 2368116 | 2365843 | 2274 | - | 62 | ![]() |
1: 1 | hypothetical protein | locus|PRU_1962, protein_id|YP_003575241.1, gi|294674625, geneID|9002411 | |||
1909 | 2368938 | 2368315 | 624 | - | 198 | ![]() |
Phage antirepressor protein | locus|PRU_1963, protein_id|YP_003575242.1, gi|294674626, geneID|9000590 | ||||
1910 | 2369953 | 2369477 | 477 | - | 538 | ![]() |
1: 1 | hypothetical protein | ||||
1911 | 2370810 | 2370175 | 636 | - | 221 | ![]() |
1: 1 | hypothetical protein | locus|PRU_1965, protein_id|YP_003575243.1, gi|294674627, geneID|9000565 | |||
1912 | 2371145 | 2371273 | 129 | + | 334 | ![]() |
1: 1 | hypothetical protein | ||||
1913 | 2371263 | 2371604 | 342 | + | -11 | ![]() |
RelE-like translational repressor toxin | |||||
1914 | 2372205 | 2372366 | 162 | + | 600 | ![]() |
1: 1 | hypothetical protein | locus|PRU_1967, protein_id|YP_003575244.1, gi|294674628, geneID|9002082 | |||
1915 | 2372359 | 2373303 | 945 | + | -8 | ![]() |
1: 5 | Protein kinase domain of HipA | locus|PRU_1968, protein_id|YP_003575245.1, gi|294674629, geneID|9002150 | |||
1916 | 2374945 | 2373536 | 1410 | - | 232 | ![]() |
Putative surface protein | locus|PRU_1969, protein_id|YP_003575246.1, gi|294674630, geneID|9000168 |
Annotation History / View All Related Annotations | Help on Annotations |
Score | Peg | Function |
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Key Link Explains Key |
Value |
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Compare Regions |
Tool | Description |
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General Tools | |
Psi-Blast | NCBI's psi-blast is used to locate distant similarities |
Transmembrane Predictions | |
TMpred | Tool for Predicting Transmembrane regions |
TMHMM | Prediction of transmembrane helices in proteins |
Protein Signals for Gram negative bacteria | |
Gram negative PSORT | Prediction of protein localization sites |
Gram negative SignalP | Predicts the presence and location of signal peptide cleavage sites |
Protein Signals for Gram positive bacteria | |
Gram positive PSORT | Prediction of protein localization sites |
Gram positive SignalP | Predicts the presence and location of signal peptide cleavage sites |
Other useful tools | |
LipoP | Prediction of lipoproteins and signal peptides in Gram negative bacteria |
Radar | Rapid Automatic Detection and Alignment of Repeats in protein sequences |
PPSearch | Search for protein motifs against all patterns stored in the PROSITE pattern database |
Gram negative CELLO | Subcellular localization predictor at National Chiao Tung University |
Gram positive CELLO | Subcellular localization predictor at National Chiao Tung University |
ProDom | A comprehensive set of protein domain families automatically generated from the SWISS-PROT and TrEMBL sequence databases |
PDB | An Information Portal to Biological Macromolecular Structures |
For Specific Organisms | |
RNAFold | The RNAfold web server will predict secondary structures of single stranded RNA or DNA sequences. |