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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|216591.1.peg.1904: Burkholderia cenocepacia J2315

This feature in The SEED Viewer

NCBI Taxonomy Id: 216591

Current Assignment: GTP cyclohydrolase II (EC 3.5.4.25)
Translate Function Assignments



Context on contig Bcep157f02.p2kA148 from base 314688 to 326231 (11544 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
1896 315485 314688 798 -           Antirepressor  
7776 316282 315800 483 - 314            
1897 316527 316270 258 - -13            
1898 317889 316687 1203 - 159     3: 21 18 19   DNA primase (EC 2.7.7.-)  
1899 318162 318350 189 + 272            
1900 318743 318351 393 - 0            
1901 318773 319153 381 + 29            
1902 319359 319937 579 + 205            
1903 320053 320388 336 + 115            
1904 320473 321117 645 + 84     16: 12 3 15 9 5 2 10 13 14 20 11 4 16 17 7 8 ff
idu(3)
idu(3)
idu(3)
GTP cyclohydrolase II (EC 3.5.4.25)  
1905 321818 321399 420 - 281     1: 6 ff
ilit(
7959018)
ilit(8370677)
isu
Prolyl endopeptidase (EC 3.4.21.26)  
1906 321860 322093 234 + 41            
1907 322086 322376 291 + -8         FIG00460146: hypothetical protein  
1908 323345 322581 765 - 204       ff FIG00453949: hypothetical protein  
1909 324042 323398 645 - 52     1: 1 cwn
ff
N-acyl-L-homoserine lactone synthetase RhlL  
1910 324648 324217 432 - 174     1: 1 ff FIG005933: hypothetical protein  
1911 324734 325453 720 + 85     1: 1 cwn
ff
Transcriptional regulator RhlR  
1912 326231 325497 735 - 43       ff Mg(2+) transport ATPase protein C  

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

Subsystem Curator Role
AOU_COG3236 almudenaortiz GTP cyclohydrolase II (EC 3.5.4.25)
Molybdenum_cofactor_biosynthesis VeronikaV GTP cyclohydrolase II (EC 3.5.4.25)
YgfZ ADHanson GTP cyclohydrolase II (EC 3.5.4.25)
COG3236 ofrelin GTP cyclohydrolase II (EC 3.5.4.25)
Experimental-FO vcrecy GTP cyclohydrolase II (EC 3.5.4.25)
COG3236-small-temp SvetaG GTP cyclohydrolase II (EC 3.5.4.25)
Folate_Tryp_Chlamydiae vcrecy GTP cyclohydrolase II (EC 3.5.4.25)
Molybdenum_cofactor_biosynthesis_ADH ADHanson GTP cyclohydrolase II (EC 3.5.4.25)
Test_-_Folate Magnusdottir_Stefania_user GTP cyclohydrolase II (EC 3.5.4.25)
Riboflavin,_FMN_and_FAD_metabolism_Extended SvetaG GTP cyclohydrolase II (EC 3.5.4.25)
Guillaume_FAD Beaudoin_Guillaume_user GTP cyclohydrolase II (EC 3.5.4.25)
Folate_Biosynthesis vcrecy GTP cyclohydrolase II (EC 3.5.4.25)
Riboflavin_biosynthesis_and_transport rodionov GTP cyclohydrolase II (EC 3.5.4.25)
Test_-_Riboflavin GTP cyclohydrolase II (EC 3.5.4.25)
Riboflavin,_FMN_and_FAD_metabolism_with_fusion_events SvetaG GTP cyclohydrolase II (EC 3.5.4.25)
OF_COG3236 ofrelin GTP cyclohydrolase II (EC 3.5.4.25)


  Protein Sequence

>fig|216591.1.peg.1904 GTP cyclohydrolase II (EC 3.5.4.25)
MTDSGLPTPGNGQADECVTLVATASLPTRYGTFTSYAFRVSGSDAEHLALVMGDVTGEQS
VLTRLHSECLTGDVFGSYRCDCGEQLDLALRYIAAEDRGVLLYLRGHEGRGIGLSNKIRA
YALQEQGRDTVEANLDLGLPDDAREYDSAAAILRILGVTSVRLMSNNPKKFDTLVKHGIP
VCERVALAVPVREENERYIRTKQTKFGHYFEENE

MD5 = da2c38ab98bc2fd919e31f39b4a19cba


  DNA Sequence

>fig|216591.1.peg.1904 GTP cyclohydrolase II (EC 3.5.4.25)
atgacagattcaggtttgcccacgccgggcaatggccaggccgacgagtgcgtgacgctc
gtcgccacggcgtcgctgcctacgcgctacggtacgttcacgtcatacgcgtttcgcgta
tcgggcagcgatgccgaacatctcgcgctcgtgatgggcgacgtgacgggcgagcagtcc
gtgctgacccggctgcattccgaatgcctgaccggtgacgtgttcggctcgtaccgctgc
gactgcggcgagcaactcgatctcgcattgcgttacatcgcggccgaagaccgaggcgtg
ctgctgtatctgcgcggccatgaaggccgcggcatcggcctgagcaacaagatccgcgcg
tacgcgttgcaggagcaggggcgcgacaccgtcgaggcgaacctcgatctcggcttgccc
gacgacgcccgcgagtacgactcggccgctgcgatcctgcgcatcctcggcgtgacgtcg
gtgcggctgatgagcaacaatccgaagaaattcgatacgctcgtgaagcatggcattccc
gtctgcgagcgcgtggcgcttgcggtgcccgtgcgcgaggaaaacgagcgttatatccgc
acgaagcagacgaagttcgggcattacttcgaggaaaacgagtaa


  DNA with Flanking Sequence

>fig|216591.1.peg.1904 GTP cyclohydrolase II (EC 3.5.4.25)
attgtcaccaacccgacttgggatgacagcaaatctactacatcgtcacggtaaactgtc
ggcctatgaaccccgactacatgagccccgcagcgctcgaacccatcgctttgacgccga
tctcggttgcgcaaattaagcgctccacacgcgagcgcccggaactggtcgcacatgtcg
cgagcatcctgcaacgtgactttgacgtagtgagcgagcttgcgcggcgcgcaccaagcg
tggtcggtgaaccggtacatgcggcgatcagacaggccctaatcgagctgtcagcgtcag
tggtgaagcagggtgcgcgcacccgatggagtccaattcacgctacccgtgaagaggtgc
gggaagtagcttgcggcctcctgcgccagagtacccgccggggtcctgtgaggtaaactc
ccgcagtagaggtctgtatttttgtacctacgcgacgacttacgcggcagaccgaagaaa
ctccacgaaatcaattacttatgacagattcaggtttgcccacgccgggcaatggccagg
ccgacgagtgcgtgacgctcgtcgccacggcgtcgctgcctacgcgctacggtacgttca
cgtcatacgcgtttcgcgtatcgggcagcgatgccgaacatctcgcgctcgtgatgggcg
acgtgacgggcgagcagtccgtgctgacccggctgcattccgaatgcctgaccggtgacg
tgttcggctcgtaccgctgcgactgcggcgagcaactcgatctcgcattgcgttacatcg
cggccgaagaccgaggcgtgctgctgtatctgcgcggccatgaaggccgcggcatcggcc
tgagcaacaagatccgcgcgtacgcgttgcaggagcaggggcgcgacaccgtcgaggcga
acctcgatctcggcttgcccgacgacgcccgcgagtacgactcggccgctgcgatcctgc
gcatcctcggcgtgacgtcggtgcggctgatgagcaacaatccgaagaaattcgatacgc
tcgtgaagcatggcattcccgtctgcgagcgcgtggcgcttgcggtgcccgtgcgcgagg
aaaacgagcgttatatccgcacgaagcagacgaagttcgggcattacttcgaggaaaacg
agtaacccaagcgggcggcgctagcgctcgtttctcgtcagcaattcttccgatcgtcgc
tggtactagcgacgatcgcgacttccttcccctcatgcgttccagtgccgcgcttgtggc
gtcatctgcattgagtccacagtcgtccttccgtacccccgtaacgatcacgccatcgaa
tcgatatcgaacgtctgacgctgcatcgttggcgaccggcgagtgcggatgtgctaccac
cggcggcaaccaccccgccgtgtaacggctcacgcacgtcagcccatcagcgccacgtac
cgttctgcaacacgatccggtaaccgtcggcatcctcgaaggtctggccggaaatttccc
agtacggattgaacgacgtcacgggcatgaagccgtgtgcggtcgcgcgctcgcaggcgg
cttcccatttcggccgatcgggcaggtagaacacgatcaaatcctcgggcgtcggcgacg
gcgcgatcggatggtcggggcagtg


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
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  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key
Value
CDD::31150 936.500;18-210
CDD::41000 943.100;18-187
evidence_code ff
evidence_code idu(3);Molybdenum_cofactor_biosynthesis
evidence_code idu(3);Riboflavin,_FMN_and_FAD_metabolism
evidence_code idu(3);Riboflavin,_FMN_and_FAD_metabolism_in_plants
GO GO:0003935 GTP cyclohydrolase II activity
isoelectric_point 4.97
molecular_weight 23519
PFAM::PF00925 903.310;18-187
PSORT::Cytoplasmic 8.96
PSORT_score::Cytoplasmic 8.96
similar_to_human no


  Protein Families

No protein families found

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