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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|216591.1.peg.1902: Burkholderia cenocepacia J2315

This feature in The SEED Viewer

NCBI Taxonomy Id: 216591

Current Assignment:
Translate Function Assignments



Context on contig Bcep157f02.p2kA148 from base 314157 to 325453 (11297 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
1895 314522 314157 366 -              
1896 315485 314688 798 - 165         Antirepressor  
7776 316282 315800 483 - 314            
1897 316527 316270 258 - -13            
1898 317889 316687 1203 - 159     3: 21 18 19   DNA primase (EC 2.7.7.-)  
1899 318162 318350 189 + 272            
1900 318743 318351 393 - 0            
1901 318773 319153 381 + 29            
1902 319359 319937 579 + 205          
1903 320053 320388 336 + 115            
1904 320473 321117 645 + 84     16: 12 3 15 9 5 2 10 14 13 20 11 4 17 16 8 7 ff
idu(3)
idu(3)
idu(3)
GTP cyclohydrolase II (EC 3.5.4.25)  
1905 321818 321399 420 - 281     1: 6 ff
ilit(
7959018)
ilit(8370677)
isu
Prolyl endopeptidase (EC 3.4.21.26)  
1906 321860 322093 234 + 41            
1907 322086 322376 291 + -8         FIG00460146: hypothetical protein  
1908 323345 322581 765 - 204       ff FIG00453949: hypothetical protein  
1909 324042 323398 645 - 52     1: 1 cwn
ff
N-acyl-L-homoserine lactone synthetase RhlL  
1910 324648 324217 432 - 174     1: 1 ff FIG005933: hypothetical protein  
1911 324734 325453 720 + 85     1: 1 cwn
ff
Transcriptional regulator RhlR  

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|216591.1.peg.1902 
MTKIGSTTRSLWDRTWQTTTNIYYTLFAAFHIPRELHSDIKGIESYLRQNCAWGRKELPN
GKPAEWYGTSPGDVLSQIVEKFPNVVQGIFTENLELDFTSHIYLPAINPYHYRDLDIATM
GRFKRLSAPATYIDELQSGCASWPERPNFLNELAATNVADQLLVVGPEILRQRLNYDAAC
REPAYGSASGRW

MD5 = 53bda0534e2faaeddf5912937f5e45a0


  DNA Sequence

>fig|216591.1.peg.1902 
atgacgaagatcgggagtacaactagatcgctgtgggatagaacatggcagaccacaacg
aatatctactatacgctttttgctgcctttcatattccgcgcgaattgcattccgacatt
aaaggcattgagtcttatttgaggcaaaattgtgcatgggggaggaaggagcttccgaac
ggtaagcccgctgagtggtatggtacgtcgccgggtgatgtgctgtcgcaaatcgttgag
aagtttccaaatgtagttcagggcatattcaccgaaaatttggagcttgatttcacttcc
catatatatctgccggcgatcaatccatatcattaccgtgatttggatattgcgacgatg
gggcgatttaagaggttgtcggcacccgctacgtatattgatgagcttcaaagcggctgt
gcgtcatggccggagcggccgaacttcctaaatgaactcgcggctacgaacgtggcagac
caactgctagttgttggtcctgaaatactgcggcaacggttgaactatgatgccgcctgc
cgtgaaccggcttacggaagcgcatcagggcgatggtag


  DNA with Flanking Sequence

>fig|216591.1.peg.1902 
ctatcaggcgcaattgcagaacaacgcgacagaccagttttgcgatagtcttaagacgtt
cggtggattggccgcgcaggcgaacaagaagggtatttcacgttacaagttcaaggacgt
aaccgcacgtatgatcgcgcgtcagccggatttgacgcccgcacaacgtcccgttgtgac
gcgcgtggcgcttaacatcgctgatgacatttatatgcacggcatcactgatgagagcga
cgggattgcagaggcgcggcttaactgtgtggagcaagtgcaatcaggtctgtaaaatag
aaactccccgcgatccactagagatggcggggccgttgccagcatgtcatcgatacccaa
agatagggacgctgtaacttacaaactggtgccatgaaatgtccgtctatatagatatag
agagtccgtctcatcccggcggtccaagtccgcgcgaaaatggttggatttatctttgct
cggacccctacaacatagggatgacgaagatcgggagtacaactagatcgctgtgggata
gaacatggcagaccacaacgaatatctactatacgctttttgctgcctttcatattccgc
gcgaattgcattccgacattaaaggcattgagtcttatttgaggcaaaattgtgcatggg
ggaggaaggagcttccgaacggtaagcccgctgagtggtatggtacgtcgccgggtgatg
tgctgtcgcaaatcgttgagaagtttccaaatgtagttcagggcatattcaccgaaaatt
tggagcttgatttcacttcccatatatatctgccggcgatcaatccatatcattaccgtg
atttggatattgcgacgatggggcgatttaagaggttgtcggcacccgctacgtatattg
atgagcttcaaagcggctgtgcgtcatggccggagcggccgaacttcctaaatgaactcg
cggctacgaacgtggcagaccaactgctagttgttggtcctgaaatactgcggcaacggt
tgaactatgatgccgcctgccgtgaaccggcttacggaagcgcatcagggcgatggtagg
gcgcagtcccggcaactgtgccctgcggtaactcattgtcaccaacccgacttgggatga
cagcaaatctactacatcgtcacggtaaactgtcggcctatgaaccccgactacatgagc
cccgcagcgctcgaacccatcgctttgacgccgatctcggttgcgcaaattaagcgctcc
acacgcgagcgcccggaactggtcgcacatgtcgcgagcatcctgcaacgtgactttgac
gtagtgagcgagcttgcgcggcgcgcaccaagcgtggtcggtgaaccggtacatgcggcg
atcagacaggccctaatcgagctgtcagcgtcagtggtgaagcagggtgcgcgcacccga
tggagtccaattcacgctacccgtgaagaggtgcgggaagtagcttgcggcctcctgcgc
cagagtacccgccggggtcctgtgaggtaaactcccgcagtagaggtctgtatttttgta
cctacgcgacgacttacgc


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
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  Functional Coupling

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  Attributes

Help on Attributes

Key
Link Explains Key
Value
isoelectric_point 6.51
molecular_weight 21877
PSORT::unknown unknown
similar_to_human no


  Protein Families

No protein families found

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